Wall clock time and date at job start Tue Mar 31 2020 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47146 * 2 1 4 4 C 1.36934 * 120.00376 * 270.38981 * 3 2 1 5 5 H 1.08005 * 119.99419 * 325.86211 * 4 3 2 6 6 C 1.38808 * 120.00273 * 145.86508 * 4 3 2 7 7 N 1.31623 * 119.99891 * 337.15354 * 6 4 3 8 8 Si 1.86803 * 120.00105 * 157.16026 * 6 4 3 9 9 H 1.48500 * 109.47111 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47008 * 119.99911 * 8 6 4 11 11 H 1.48508 * 109.46654 * 239.99761 * 8 6 4 12 12 C 1.46503 * 119.99728 * 90.39234 * 3 2 1 13 13 C 1.53000 * 109.47555 * 89.99936 * 12 3 2 14 14 H 1.09009 * 109.46501 * 305.00096 * 13 12 3 15 15 O 1.42901 * 109.46973 * 64.99286 * 13 12 3 16 16 C 1.52998 * 109.47600 * 184.99954 * 13 12 3 17 17 O 1.42892 * 109.47392 * 174.99936 * 16 13 12 18 18 C 1.35898 * 117.00464 * 180.02562 * 17 16 13 19 19 C 1.38728 * 120.05940 * 179.97438 * 18 17 16 20 20 C 1.38150 * 119.94354 * 179.97438 * 19 18 17 21 21 C 1.50694 * 119.97261 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05391 * 0.02562 * 20 19 18 23 23 C 1.38259 * 120.11216 * 359.95215 * 22 20 19 24 24 C 1.50708 * 119.97125 * 180.02562 * 23 22 20 25 25 C 1.38140 * 120.05971 * 0.04931 * 23 22 20 26 26 H 1.09002 * 109.46635 * 299.99820 * 1 2 3 27 27 H 1.08998 * 109.46725 * 59.99448 * 1 2 3 28 28 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46635 * 240.00180 * 2 1 3 30 30 H 1.08998 * 109.46725 * 120.00552 * 2 1 3 31 31 H 0.96996 * 119.99709 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47298 * 329.99568 * 12 3 2 33 33 H 1.09004 * 109.47255 * 209.99489 * 12 3 2 34 34 H 0.96702 * 113.99672 * 60.00972 * 15 13 12 35 35 H 1.09004 * 109.46592 * 54.99621 * 16 13 12 36 36 H 1.09003 * 109.46997 * 294.99957 * 16 13 12 37 37 H 1.07994 * 120.02840 * 359.69676 * 19 18 17 38 38 H 1.09006 * 109.47070 * 90.00404 * 21 20 19 39 39 H 1.08998 * 109.47481 * 210.00333 * 21 20 19 40 40 H 1.09004 * 109.47368 * 330.00638 * 21 20 19 41 41 H 1.08000 * 119.94077 * 179.97438 * 22 20 19 42 42 H 1.08993 * 109.47404 * 270.02549 * 24 23 22 43 43 H 1.09002 * 109.46554 * 30.02454 * 24 23 22 44 44 H 1.09003 * 109.46717 * 150.02370 * 24 23 22 45 45 H 1.08001 * 120.03248 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2390 2.0294 -1.1858 5 1 2.5950 1.4788 -2.0441 6 6 2.0053 3.3941 -1.2848 7 7 1.1791 3.9828 -0.4461 8 14 2.8633 4.3951 -2.6082 9 1 3.7346 3.5043 -3.4159 10 1 1.8472 5.0257 -3.4886 11 1 3.6906 5.4514 -1.9715 12 6 2.2707 2.0688 1.2688 13 6 3.7185 1.8274 1.7007 14 1 3.9115 0.7553 1.7414 15 8 4.6043 2.4353 0.7584 16 6 3.9470 2.4398 3.0840 17 8 5.2625 2.1146 3.5376 18 6 5.6280 2.5851 4.7589 19 6 6.8907 2.3067 5.2615 20 6 7.2600 2.7867 6.5032 21 6 8.6312 2.4842 7.0499 22 6 6.3720 3.5436 7.2451 23 6 5.1131 3.8228 6.7462 24 6 4.1480 4.6485 7.5574 25 6 4.7390 3.3452 5.5052 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.0161 4.9365 -0.5151 32 1 1.5948 1.6830 2.0319 33 1 2.1030 3.1384 1.1420 34 1 4.4886 3.3913 0.6699 35 1 3.2124 2.0409 3.7836 36 1 3.8408 3.5230 3.0239 37 1 7.5828 1.7115 4.6845 38 1 9.3255 3.2665 6.7431 39 1 8.5877 2.4436 8.1383 40 1 8.9726 1.5237 6.6639 41 1 6.6624 3.9175 8.2158 42 1 3.5522 3.9923 8.1916 43 1 4.7039 5.3493 8.1803 44 1 3.4900 5.2013 6.8867 45 1 3.7554 3.5632 5.1162 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265383430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:30 Heat of formation + Delta-G solvation = -58.225923 kcal Electronic energy + Delta-G solvation = -23724.659362 eV Core-core repulsion = 20321.667057 eV Total energy + Delta-G solvation = -3402.992305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.13658 -38.06929 -36.74027 -34.84463 -33.61310 -31.80764 -31.17727 -30.07900 -28.49323 -27.31143 -26.92990 -25.42267 -23.51434 -21.77778 -21.57230 -20.43735 -19.94051 -17.50751 -16.84338 -16.22697 -15.99389 -15.91057 -15.11033 -14.69196 -14.26455 -14.10804 -13.89688 -13.79038 -13.39657 -13.33767 -13.22886 -13.07454 -12.76398 -12.61700 -12.25928 -12.00565 -11.87858 -11.62044 -11.46497 -11.17816 -11.11748 -10.92563 -10.72313 -10.52934 -10.41491 -10.13393 -10.07834 -9.97990 -9.76096 -9.23054 -8.64300 -8.51217 -8.05033 -6.62521 -5.79407 -3.30752 1.30534 1.49067 3.33641 3.41123 3.46504 3.52363 3.72686 4.50359 4.67169 4.73072 5.01799 5.11494 5.16160 5.20753 5.24244 5.32135 5.35469 5.44124 5.47195 5.48726 5.52585 5.56204 5.70019 5.74340 5.82612 5.87070 6.07555 6.11704 6.18571 6.28764 6.38669 6.47346 6.49199 6.53942 6.59417 6.62768 6.75777 6.85930 6.95318 7.21885 7.51530 7.62964 7.83034 8.45561 8.54491 9.16148 9.79856 10.35147 11.21579 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.003554 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.180926 B = 7876.113505 C = 8150.187684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 N -0.575 5.575 4 C -0.232 4.232 5 H 0.061 0.939 6 C 0.004 3.996 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.288 1.288 12 C 0.117 3.883 13 C 0.093 3.907 14 H 0.087 0.913 15 O -0.539 6.539 16 C 0.028 3.972 17 O -0.304 6.304 18 C 0.145 3.855 19 C -0.165 4.165 20 C -0.048 4.048 21 C -0.113 4.113 22 C -0.169 4.169 23 C -0.044 4.044 24 C -0.115 4.115 25 C -0.218 4.218 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.252 0.748 32 H 0.032 0.968 33 H 0.107 0.893 34 H 0.366 0.634 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 -0.848 15.907 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.295 5.295 4 C -0.362 4.362 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.220 1.220 11 H -0.215 1.215 12 C -0.010 4.010 13 C 0.030 3.970 14 H 0.105 0.895 15 O -0.343 6.343 16 C -0.048 4.048 17 O -0.216 6.216 18 C 0.099 3.901 19 C -0.183 4.183 20 C -0.048 4.048 21 C -0.169 4.169 22 C -0.187 4.187 23 C -0.045 4.045 24 C -0.172 4.172 25 C -0.237 4.237 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.124 0.876 34 H 0.212 0.788 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.897 -1.449 15.663 17.601 hybrid contribution -0.134 1.319 -0.439 1.397 sum 7.763 -0.130 15.224 17.090 Atomic orbital electron populations 1.22274 0.99592 0.98425 1.01898 1.20895 0.91993 0.87350 0.98322 1.43678 1.73839 1.09968 1.02010 1.19057 1.35982 0.91177 0.89945 0.92142 1.24983 0.97731 0.98452 0.98289 1.69984 1.34140 1.10193 1.39731 0.86340 0.79365 0.80156 0.81642 1.20102 1.22048 1.21474 1.21527 0.89358 1.03002 0.87164 1.22910 0.94232 0.97093 0.82760 0.89494 1.86545 1.59744 1.25278 1.62726 1.23899 0.81527 1.00720 0.98648 1.86214 1.34154 1.71171 1.30104 1.19130 0.93458 0.92396 0.85150 1.20277 0.95165 1.06057 0.96836 1.19634 0.95974 0.95855 0.93316 1.20783 0.93107 1.02132 1.00897 1.20718 0.93927 1.03364 1.00711 1.19664 0.94704 0.96210 0.93883 1.20814 0.98089 0.98857 0.99441 1.21184 1.00867 1.04844 0.96794 0.93892 0.92611 0.95015 0.93813 0.94947 0.93787 0.94971 0.87556 0.78840 0.91845 0.91956 0.85437 0.91034 0.91520 0.91398 0.86337 0.91047 0.91515 0.91380 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 37.16 0.38 -2.81 16 2 C 0.14 2.94 6.39 -4.04 -0.03 2.91 16 3 N -0.58 -13.86 2.43 -173.24 -0.42 -14.28 16 4 C -0.23 -6.17 8.99 -15.06 -0.14 -6.31 16 5 H 0.06 1.66 7.93 -52.48 -0.42 1.24 16 6 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 7 N -0.90 -24.51 11.32 55.49 0.63 -23.88 16 8 Si 0.90 21.30 29.61 -169.99 -5.03 16.27 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.12 2.57 4.97 -4.04 -0.02 2.55 16 13 C 0.09 1.82 3.49 -26.73 -0.09 1.73 16 14 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 15 O -0.54 -11.74 12.78 -40.08 -0.51 -12.25 16 16 C 0.03 0.47 4.37 37.16 0.16 0.63 16 17 O -0.30 -5.32 10.10 -24.27 -0.25 -5.57 16 18 C 0.15 2.26 6.69 -39.22 -0.26 2.00 16 19 C -0.16 -2.30 9.64 -39.43 -0.38 -2.68 16 20 C -0.05 -0.56 5.88 -104.65 -0.62 -1.18 16 21 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 22 C -0.17 -1.94 9.35 -39.56 -0.37 -2.31 16 23 C -0.04 -0.54 5.88 -104.65 -0.62 -1.16 16 24 C -0.12 -1.07 10.01 36.01 0.36 -0.71 16 25 C -0.22 -3.07 8.69 -39.43 -0.34 -3.41 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 30 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.11 2.60 5.32 -51.93 -0.28 2.32 16 34 H 0.37 7.44 9.05 45.56 0.41 7.85 16 35 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 36 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 45 H 0.13 1.71 6.30 -52.49 -0.33 1.38 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -29.62 370.83 -8.54 -38.16 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.86 Total: 7.31 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.68 Total: -11.34 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.21 Total: -38.16 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.76 Total: -17.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.62 -8.54 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265383430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.066 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds