Wall clock time and date at job start Tue Mar 31 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46896 * 109.47375 * 2 1 4 4 C 1.46904 * 110.99866 * 288.00045 * 3 2 1 5 5 C 1.50699 * 109.47218 * 160.35884 * 4 3 2 6 6 H 1.08008 * 119.99978 * 4.66287 * 5 4 3 7 7 C 1.37874 * 119.99994 * 184.65451 * 5 4 3 8 8 N 1.31511 * 120.00371 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46975 * 90.00307 * 9 7 5 11 11 H 1.48499 * 109.46965 * 210.00149 * 9 7 5 12 12 H 1.48503 * 109.46719 * 330.00615 * 9 7 5 13 13 C 1.46903 * 111.00166 * 164.04513 * 3 2 1 14 14 C 1.52988 * 109.47129 * 293.95536 * 13 3 2 15 15 H 1.08996 * 109.47501 * 59.99566 * 14 13 3 16 16 O 1.42899 * 109.46914 * 299.99634 * 14 13 3 17 17 C 1.52999 * 109.47221 * 180.02562 * 14 13 3 18 18 O 1.42901 * 109.47511 * 184.99775 * 17 14 13 19 19 C 1.35894 * 117.00334 * 179.97438 * 18 17 14 20 20 C 1.38758 * 120.05555 * 0.02562 * 19 18 17 21 21 C 1.38122 * 119.94347 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.06023 * 0.02562 * 21 20 19 23 23 C 1.38254 * 120.10676 * 0.02562 * 22 21 20 24 24 C 1.38158 * 120.05480 * 359.67612 * 23 22 21 25 25 C 1.50703 * 120.02618 * 180.29555 * 24 23 22 26 26 H 1.09000 * 109.47548 * 179.46927 * 1 2 3 27 27 H 1.09007 * 109.47409 * 299.46431 * 1 2 3 28 28 H 1.09000 * 109.47350 * 59.46119 * 1 2 3 29 29 H 1.09001 * 109.47123 * 240.00026 * 2 1 3 30 30 H 1.09001 * 109.47683 * 120.00100 * 2 1 3 31 31 H 1.08998 * 109.47064 * 280.36105 * 4 3 2 32 32 H 1.08997 * 109.47077 * 40.35474 * 4 3 2 33 33 H 0.96999 * 120.00077 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47281 * 173.94749 * 13 3 2 35 35 H 1.09004 * 109.46787 * 53.95610 * 13 3 2 36 36 H 0.96697 * 114.00321 * 299.99690 * 16 14 13 37 37 H 1.09002 * 109.46992 * 304.99850 * 17 14 13 38 38 H 1.09000 * 109.47432 * 64.99751 * 17 14 13 39 39 H 1.07995 * 120.02389 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.97155 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.95071 * 179.97438 * 22 21 20 42 42 H 1.07996 * 119.96653 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47067 * 270.31926 * 25 24 23 44 44 H 1.08999 * 109.47139 * 30.32552 * 25 24 23 45 45 H 1.09005 * 109.46677 * 150.32405 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7956 2.0225 -1.3043 5 6 1.8469 3.5204 -1.1468 6 1 2.1022 3.9544 -0.1913 7 6 1.5681 4.3367 -2.2223 8 7 1.2569 3.8082 -3.3857 9 14 1.6325 6.1934 -2.0272 10 1 3.0030 6.6761 -2.3334 11 1 0.6656 6.8232 -2.9619 12 1 1.2801 6.5568 -0.6311 13 6 3.4383 1.4417 0.3770 14 6 3.5972 0.9995 1.8329 15 1 3.2322 -0.0215 1.9445 16 8 2.8441 1.8698 2.6799 17 6 5.0747 1.0592 2.2258 18 8 5.2382 0.5367 3.5457 19 6 6.5001 0.5173 4.0497 20 6 7.5594 0.9920 3.2895 21 6 8.8410 0.9717 3.8042 22 6 9.0690 0.4783 5.0758 23 6 8.0154 0.0038 5.8348 24 6 6.7308 0.0277 5.3269 25 6 5.5818 -0.4836 6.1573 26 1 -0.3634 -1.0276 -0.0095 27 1 -0.3634 0.5055 0.8948 28 1 -0.3634 0.5222 -0.8851 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.5697 1.7039 -2.0023 32 1 0.8180 1.7308 -1.6882 33 1 1.0605 4.3826 -4.1423 34 1 3.8034 2.4627 0.2654 35 1 4.0128 0.7779 -0.2692 36 1 3.1152 2.7967 2.6321 37 1 5.6613 0.4655 1.5247 38 1 5.4161 2.0941 2.1998 39 1 7.3818 1.3778 2.2966 40 1 9.6658 1.3414 3.2131 41 1 10.0718 0.4629 5.4764 42 1 8.1961 -0.3814 6.8274 43 1 5.4452 -1.5490 5.9718 44 1 5.7975 -0.3234 7.2137 45 1 4.6717 0.0519 5.8871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267043134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:10 Heat of formation + Delta-G solvation = -67.074839 kcal Electronic energy + Delta-G solvation = -23514.442254 eV Core-core repulsion = 20111.066232 eV Total energy + Delta-G solvation = -3403.376022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35468 -38.34980 -37.16792 -35.56491 -32.95184 -32.64433 -31.02530 -30.18474 -29.39613 -27.17615 -26.73995 -24.85228 -22.66664 -22.47039 -21.77455 -21.05692 -19.73568 -18.07529 -16.76421 -16.47139 -16.30934 -15.81132 -15.44746 -14.99746 -14.77678 -14.52609 -14.25451 -14.02978 -13.59059 -13.44523 -13.26443 -13.08419 -12.85081 -12.38984 -12.26715 -12.11225 -11.66442 -11.47732 -11.45297 -11.33672 -11.11552 -11.02620 -10.91172 -10.83534 -10.70034 -10.47401 -10.19225 -9.87026 -9.48449 -9.22443 -8.98496 -8.44023 -8.21243 -7.25064 -6.04315 -4.05622 1.16402 1.31331 3.06851 3.29366 3.36515 3.40758 3.60943 4.39438 4.57036 4.63231 4.66804 4.78866 4.91442 5.00576 5.06168 5.12744 5.22211 5.31294 5.36801 5.41677 5.53079 5.54380 5.60231 5.62382 5.72479 5.75024 5.92760 6.10108 6.10295 6.20113 6.21347 6.30450 6.31541 6.38143 6.45584 6.60507 6.66814 6.86240 7.18933 7.30012 7.35137 7.78991 8.01172 8.12283 8.18412 8.52033 9.01638 9.58510 11.06245 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.003329 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.110676 B = 8407.935262 C = 9323.915567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.522 5.522 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.036 3.964 14 C 0.116 3.884 15 H 0.101 0.899 16 O -0.538 6.538 17 C 0.026 3.974 18 O -0.300 6.300 19 C 0.133 3.867 20 C -0.208 4.208 21 C -0.087 4.087 22 C -0.161 4.161 23 C -0.086 4.086 24 C -0.120 4.120 25 C -0.106 4.106 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.058 0.942 31 H -0.013 1.013 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.372 0.628 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.534 -8.416 14.893 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.247 5.247 4 C 0.066 3.934 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.093 4.093 14 C 0.056 3.944 15 H 0.119 0.881 16 O -0.342 6.342 17 C -0.050 4.050 18 O -0.213 6.213 19 C 0.087 3.913 20 C -0.226 4.226 21 C -0.105 4.105 22 C -0.179 4.179 23 C -0.104 4.104 24 C -0.121 4.121 25 C -0.163 4.163 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.004 0.996 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.219 0.781 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.695 -8.722 15.280 21.126 hybrid contribution 1.110 1.195 -1.205 2.028 sum 12.805 -7.527 14.074 20.463 Atomic orbital electron populations 1.21719 0.95348 0.99891 1.03005 1.22043 0.96346 0.90805 0.98735 1.62035 1.14149 1.14362 1.34157 1.19815 0.96553 0.94303 0.82779 1.21150 1.46198 0.90616 0.96234 0.91949 1.24990 0.95492 0.98942 0.95241 1.69951 1.47661 1.35263 1.01078 0.86525 0.77667 0.85315 0.78078 1.20852 1.21275 1.19711 1.22525 0.91730 1.02092 0.92972 1.21973 0.86448 0.95882 0.90124 0.88090 1.86590 1.61309 1.21210 1.65058 1.23733 1.00090 0.99065 0.82080 1.86142 1.24539 1.78570 1.32007 1.18939 0.84018 0.95533 0.92845 1.21316 0.93264 1.06758 1.01307 1.20927 0.96120 0.97907 0.95510 1.21009 0.99015 1.02670 0.95219 1.20871 0.91284 0.98602 0.99646 1.19307 0.95862 1.03820 0.93072 1.20618 0.96461 1.01093 0.98083 0.93730 0.92176 0.92103 0.96234 0.92342 0.99552 0.94329 0.92938 0.89501 0.95347 0.78089 0.91389 0.91495 0.85388 0.85971 0.86127 0.85619 0.91520 0.91894 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.98 37.15 0.37 -2.12 16 2 C 0.05 0.89 5.55 -3.83 -0.02 0.87 16 3 N -0.52 -10.92 4.25 -236.08 -1.00 -11.92 16 4 C 0.19 4.83 4.59 -4.97 -0.02 4.81 16 5 C -0.50 -13.77 8.61 -34.44 -0.30 -14.07 16 6 H 0.06 1.68 7.66 -52.48 -0.40 1.28 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.04 0.63 4.45 -3.83 -0.02 0.62 16 14 C 0.12 1.74 3.16 -26.74 -0.08 1.66 16 15 H 0.10 1.55 6.28 -51.93 -0.33 1.22 16 16 O -0.54 -8.91 13.17 -40.11 -0.53 -9.44 16 17 C 0.03 0.34 4.37 37.16 0.16 0.50 16 18 O -0.30 -4.17 9.15 -24.28 -0.22 -4.39 16 19 C 0.13 1.71 6.66 -39.21 -0.26 1.45 16 20 C -0.21 -2.40 9.04 -39.43 -0.36 -2.76 16 21 C -0.09 -0.87 10.04 -39.61 -0.40 -1.27 16 22 C -0.16 -1.52 10.04 -39.56 -0.40 -1.92 16 23 C -0.09 -0.85 9.70 -39.60 -0.38 -1.23 16 24 C -0.12 -1.39 5.89 -104.47 -0.62 -2.01 16 25 C -0.11 -1.08 9.79 36.01 0.35 -0.73 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.06 1.18 6.52 -51.93 -0.34 0.85 16 29 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 30 H 0.06 0.95 5.94 -51.93 -0.31 0.65 16 31 H -0.01 -0.36 8.00 -51.93 -0.42 -0.77 16 32 H 0.04 1.06 6.24 -51.93 -0.32 0.73 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.09 1.61 7.32 -51.93 -0.38 1.23 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.37 5.27 9.04 45.56 0.41 5.69 16 37 H 0.07 0.78 7.66 -51.93 -0.40 0.39 16 38 H 0.07 0.79 7.66 -51.93 -0.40 0.39 16 39 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 45 H 0.07 0.87 7.53 -51.93 -0.39 0.47 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -31.14 365.37 -9.13 -40.27 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.53 Total: 4.14 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.07 Total: -14.78 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.27 Total: -37.60 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.75 Total: -13.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.14 -9.13 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267043134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.805 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds