Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46896 * 109.47375 * 2 1 4 4 C 1.46904 * 110.99866 * 288.00045 * 3 2 1 5 5 C 1.50699 * 109.47218 * 160.35884 * 4 3 2 6 6 H 1.08008 * 119.99978 * 4.66287 * 5 4 3 7 7 C 1.37874 * 119.99994 * 184.65451 * 5 4 3 8 8 N 1.31511 * 120.00371 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46975 * 90.00307 * 9 7 5 11 11 H 1.48499 * 109.46965 * 210.00149 * 9 7 5 12 12 H 1.48503 * 109.46719 * 330.00615 * 9 7 5 13 13 C 1.46903 * 111.00166 * 164.04513 * 3 2 1 14 14 C 1.52988 * 109.47129 * 293.95536 * 13 3 2 15 15 H 1.08996 * 109.47501 * 59.99566 * 14 13 3 16 16 O 1.42899 * 109.46914 * 299.99634 * 14 13 3 17 17 C 1.52999 * 109.47221 * 180.02562 * 14 13 3 18 18 O 1.42901 * 109.47511 * 184.99775 * 17 14 13 19 19 C 1.35894 * 117.00334 * 179.97438 * 18 17 14 20 20 C 1.38758 * 120.05555 * 0.02562 * 19 18 17 21 21 C 1.38122 * 119.94347 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.06023 * 0.02562 * 21 20 19 23 23 C 1.38254 * 120.10676 * 0.02562 * 22 21 20 24 24 C 1.38158 * 120.05480 * 359.67612 * 23 22 21 25 25 C 1.50703 * 120.02618 * 180.29555 * 24 23 22 26 26 H 1.09000 * 109.47548 * 179.46927 * 1 2 3 27 27 H 1.09007 * 109.47409 * 299.46431 * 1 2 3 28 28 H 1.09000 * 109.47350 * 59.46119 * 1 2 3 29 29 H 1.09001 * 109.47123 * 240.00026 * 2 1 3 30 30 H 1.09001 * 109.47683 * 120.00100 * 2 1 3 31 31 H 1.08998 * 109.47064 * 280.36105 * 4 3 2 32 32 H 1.08997 * 109.47077 * 40.35474 * 4 3 2 33 33 H 0.96999 * 120.00077 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47281 * 173.94749 * 13 3 2 35 35 H 1.09004 * 109.46787 * 53.95610 * 13 3 2 36 36 H 0.96697 * 114.00321 * 299.99690 * 16 14 13 37 37 H 1.09002 * 109.46992 * 304.99850 * 17 14 13 38 38 H 1.09000 * 109.47432 * 64.99751 * 17 14 13 39 39 H 1.07995 * 120.02389 * 0.02562 * 20 19 18 40 40 H 1.08001 * 119.97155 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.95071 * 179.97438 * 22 21 20 42 42 H 1.07996 * 119.96653 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47067 * 270.31926 * 25 24 23 44 44 H 1.08999 * 109.47139 * 30.32552 * 25 24 23 45 45 H 1.09005 * 109.46677 * 150.32405 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7956 2.0225 -1.3043 5 6 1.8469 3.5204 -1.1468 6 1 2.1022 3.9544 -0.1913 7 6 1.5681 4.3367 -2.2223 8 7 1.2569 3.8082 -3.3857 9 14 1.6325 6.1934 -2.0272 10 1 3.0030 6.6761 -2.3334 11 1 0.6656 6.8232 -2.9619 12 1 1.2801 6.5568 -0.6311 13 6 3.4383 1.4417 0.3770 14 6 3.5972 0.9995 1.8329 15 1 3.2322 -0.0215 1.9445 16 8 2.8441 1.8698 2.6799 17 6 5.0747 1.0592 2.2258 18 8 5.2382 0.5367 3.5457 19 6 6.5001 0.5173 4.0497 20 6 7.5594 0.9920 3.2895 21 6 8.8410 0.9717 3.8042 22 6 9.0690 0.4783 5.0758 23 6 8.0154 0.0038 5.8348 24 6 6.7308 0.0277 5.3269 25 6 5.5818 -0.4836 6.1573 26 1 -0.3634 -1.0276 -0.0095 27 1 -0.3634 0.5055 0.8948 28 1 -0.3634 0.5222 -0.8851 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.5697 1.7039 -2.0023 32 1 0.8180 1.7308 -1.6882 33 1 1.0605 4.3826 -4.1423 34 1 3.8034 2.4627 0.2654 35 1 4.0128 0.7779 -0.2692 36 1 3.1152 2.7967 2.6321 37 1 5.6613 0.4655 1.5247 38 1 5.4161 2.0941 2.1998 39 1 7.3818 1.3778 2.2966 40 1 9.6658 1.3414 3.2131 41 1 10.0718 0.4629 5.4764 42 1 8.1961 -0.3814 6.8274 43 1 5.4452 -1.5490 5.9718 44 1 5.7975 -0.3234 7.2137 45 1 4.6717 0.0519 5.8871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267043134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = -87.491046 kcal Electronic energy + Delta-G solvation = -23515.327567 eV Core-core repulsion = 20111.066232 eV Total energy + Delta-G solvation = -3404.261336 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24823 -39.60877 -38.30220 -36.96056 -34.72477 -33.74115 -32.31448 -31.34205 -30.68071 -28.79420 -27.62643 -26.31797 -24.43239 -23.60698 -22.66517 -22.11850 -21.30424 -19.00827 -18.56540 -17.77918 -17.52217 -16.85080 -16.63124 -16.36074 -15.98494 -15.86925 -15.74460 -15.18714 -14.97593 -14.70797 -14.25283 -14.20543 -14.00813 -13.85536 -13.33095 -13.18881 -13.14384 -12.95528 -12.88629 -12.66888 -12.59213 -12.35861 -12.22556 -12.11203 -12.00288 -11.93933 -11.72477 -11.45282 -11.17561 -10.90166 -10.56665 -9.76364 -9.06144 -8.96285 -8.17930 -6.27493 0.38207 0.50396 1.41335 1.43335 1.54604 2.07210 2.41495 2.82139 3.12859 3.24456 3.55733 3.79145 3.84562 3.87366 4.01982 4.08059 4.21600 4.23246 4.28719 4.31500 4.42869 4.48877 4.51504 4.68719 4.70071 4.74989 4.79493 4.83139 4.88530 4.99150 5.03274 5.08434 5.24461 5.28982 5.33609 5.39361 5.43102 5.54146 5.61144 5.68560 5.90191 6.09920 6.37837 6.46262 6.62732 6.86292 6.89782 7.41916 8.92570 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.003329 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.110676 B = 8407.935262 C = 9323.915567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.046 3.954 3 N -0.532 5.532 4 C 0.206 3.794 5 C -0.516 4.516 6 H 0.064 0.936 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.038 3.962 14 C 0.129 3.871 15 H 0.101 0.899 16 O -0.555 6.555 17 C 0.035 3.965 18 O -0.316 6.316 19 C 0.104 3.896 20 C -0.220 4.220 21 C -0.094 4.094 22 C -0.159 4.159 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.103 4.103 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.018 0.982 30 H 0.083 0.917 31 H -0.040 1.040 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.381 0.619 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.272 -8.350 16.711 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 N -0.257 5.257 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.082 0.918 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.091 4.091 14 C 0.069 3.931 15 H 0.118 0.882 16 O -0.360 6.360 17 C -0.041 4.041 18 O -0.230 6.230 19 C 0.059 3.941 20 C -0.239 4.239 21 C -0.112 4.112 22 C -0.177 4.177 23 C -0.106 4.106 24 C -0.138 4.138 25 C -0.159 4.159 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.101 0.899 31 H -0.022 1.022 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.229 0.771 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.450 -8.665 17.121 23.433 hybrid contribution 0.631 1.102 -1.717 2.135 sum 14.081 -7.563 15.404 22.198 Atomic orbital electron populations 1.21680 0.94908 1.01538 1.01293 1.22162 0.96783 0.89432 0.99793 1.61958 1.16467 1.16032 1.31219 1.19450 0.94146 0.94033 0.84395 1.21469 1.45865 0.91762 0.96307 0.91798 1.25884 0.95012 1.03955 0.94833 1.70082 1.48667 1.37078 1.01935 0.85426 0.77989 0.79235 0.78229 1.19767 1.21126 1.18900 1.22527 0.89836 1.01721 0.94970 1.21770 0.87997 0.95318 0.87993 0.88177 1.86553 1.62099 1.22108 1.65287 1.23535 0.98296 0.99860 0.82405 1.86081 1.25648 1.79117 1.32158 1.19227 0.83792 0.97291 0.93815 1.21488 0.93761 1.07033 1.01587 1.21265 0.96109 0.97621 0.96177 1.21406 1.00257 1.01261 0.94811 1.21222 0.90572 0.97987 1.00780 1.19628 0.97091 1.04147 0.92965 1.20602 0.95288 1.00946 0.99108 0.90425 0.92672 0.94883 0.96343 0.89874 1.02243 0.97003 0.92817 0.90743 0.94606 0.77084 0.90163 0.90738 0.85030 0.83883 0.83397 0.83061 0.91124 0.89902 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.98 71.98 0.72 -4.05 16 2 C 0.05 1.67 5.55 86.30 0.48 2.15 16 3 N -0.53 -22.53 4.25 -900.82 -3.83 -26.36 16 4 C 0.21 10.81 4.59 85.56 0.39 11.21 16 5 C -0.52 -28.72 8.61 25.60 0.22 -28.50 16 6 H 0.06 3.46 7.66 -2.91 -0.02 3.44 16 7 C 0.00 0.04 5.46 84.65 0.46 0.51 16 8 N -0.94 -56.17 13.29 21.45 0.28 -55.89 16 9 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.04 1.35 4.45 86.30 0.38 1.73 16 14 C 0.13 3.81 3.16 30.59 0.10 3.90 16 15 H 0.10 2.97 6.28 -2.39 -0.02 2.96 16 16 O -0.55 -18.16 13.17 -144.32 -1.90 -20.06 16 17 C 0.03 0.87 4.37 71.98 0.31 1.18 16 18 O -0.32 -8.68 9.15 -87.70 -0.80 -9.48 16 19 C 0.10 2.60 6.66 22.51 0.15 2.75 16 20 C -0.22 -4.82 9.04 22.37 0.20 -4.62 16 21 C -0.09 -1.68 10.04 22.25 0.22 -1.46 16 22 C -0.16 -2.55 10.04 22.28 0.22 -2.32 16 23 C -0.09 -1.51 9.70 22.25 0.22 -1.29 16 24 C -0.14 -3.02 5.89 -19.77 -0.12 -3.14 16 25 C -0.10 -1.99 9.79 71.24 0.70 -1.29 16 26 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.03 1.31 6.52 -2.39 -0.02 1.30 16 29 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 30 H 0.08 2.60 5.94 -2.39 -0.01 2.59 16 31 H -0.04 -2.27 8.00 -2.39 -0.02 -2.29 16 32 H 0.01 0.68 6.24 -2.39 -0.01 0.67 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.07 2.79 7.32 -2.38 -0.02 2.78 16 35 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 36 H 0.38 10.70 9.04 -74.06 -0.67 10.03 16 37 H 0.08 1.77 7.66 -2.39 -0.02 1.75 16 38 H 0.07 1.71 7.66 -2.39 -0.02 1.70 16 39 H 0.13 2.64 6.30 -2.91 -0.02 2.63 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 45 H 0.05 1.27 7.53 -2.38 -0.02 1.25 16 Total: -1.00 -67.74 365.37 0.75 -66.99 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.30 Total: 22.14 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.66 Total: -23.26 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -3.54 Total: -82.25 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -2.70 Total: -29.54 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.74 0.75 -66.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267043134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.501 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds