Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46846 * 2 1 4 4 C 1.46895 * 111.00197 * 297.32779 * 3 2 1 5 5 C 1.50704 * 109.47205 * 292.72717 * 4 3 2 6 6 H 1.08001 * 119.99853 * 355.02201 * 5 4 3 7 7 C 1.37873 * 120.00245 * 175.02355 * 5 4 3 8 8 N 1.31514 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47028 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47453 * 119.99977 * 9 7 5 12 12 H 1.48508 * 109.47376 * 240.00086 * 9 7 5 13 13 C 1.46906 * 111.00005 * 61.28295 * 3 2 1 14 14 C 1.53004 * 109.46920 * 66.04231 * 13 3 2 15 15 H 1.08993 * 109.47597 * 305.00194 * 14 13 3 16 16 O 1.42910 * 109.46765 * 65.00269 * 14 13 3 17 17 C 1.52999 * 109.46773 * 184.99881 * 14 13 3 18 18 O 1.42898 * 109.46879 * 175.00485 * 17 14 13 19 19 C 1.35907 * 116.99873 * 180.02562 * 18 17 14 20 20 C 1.38745 * 120.05348 * 359.72178 * 19 18 17 21 21 C 1.38130 * 119.94021 * 179.70215 * 20 19 18 22 22 C 1.38287 * 120.05620 * 0.59368 * 21 20 19 23 23 C 1.38242 * 120.11059 * 359.68176 * 22 21 20 24 24 C 1.38170 * 120.05520 * 0.02562 * 23 22 21 25 25 C 1.50703 * 120.02577 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47340 * 299.43569 * 1 2 3 27 27 H 1.09002 * 109.47053 * 59.44038 * 1 2 3 28 28 H 1.09008 * 109.47219 * 179.43800 * 1 2 3 29 29 H 1.08997 * 109.46927 * 239.99805 * 2 1 3 30 30 H 1.08997 * 109.47297 * 119.99859 * 2 1 3 31 31 H 1.08998 * 109.47101 * 52.72432 * 4 3 2 32 32 H 1.09003 * 109.47296 * 172.72795 * 4 3 2 33 33 H 0.96998 * 120.00813 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46809 * 186.04293 * 13 3 2 35 35 H 1.08998 * 109.47077 * 306.04403 * 13 3 2 36 36 H 0.96691 * 113.99955 * 60.00095 * 16 14 13 37 37 H 1.09003 * 109.47339 * 295.00188 * 17 14 13 38 38 H 1.08998 * 109.46951 * 55.00057 * 17 14 13 39 39 H 1.08003 * 120.03408 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.97174 * 180.29602 * 21 20 19 41 41 H 1.07997 * 119.94520 * 179.69576 * 22 21 20 42 42 H 1.07995 * 119.97228 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.46535 * 270.01138 * 25 24 23 44 44 H 1.08997 * 109.47539 * 30.01660 * 25 24 23 45 45 H 1.08996 * 109.46974 * 150.02010 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6015 2.0912 -1.2183 5 6 2.3002 1.4916 -2.4114 6 1 3.0458 0.7231 -2.2705 7 6 1.9877 1.9242 -3.6826 8 7 1.0795 2.8597 -3.8542 9 14 2.8543 1.1815 -5.1614 10 1 3.8259 0.1565 -4.7024 11 1 1.8523 0.5489 -6.0562 12 1 3.5743 2.2492 -5.9010 13 6 1.5738 2.1010 1.2028 14 6 2.2317 1.4823 2.4378 15 1 2.0204 0.4133 2.4650 16 8 3.6447 1.6872 2.3778 17 6 1.6733 2.1448 3.6989 18 8 2.1998 1.4891 4.8543 19 6 1.8003 1.9583 6.0656 20 6 0.9241 3.0314 6.1406 21 6 0.5147 3.5024 7.3729 22 6 0.9870 2.9131 8.5314 23 6 1.8646 1.8474 8.4593 24 6 2.2723 1.3687 7.2291 25 6 3.2295 0.2072 7.1513 26 1 -0.3634 0.5050 0.8950 27 1 -0.3633 0.5225 -0.8849 28 1 -0.3634 -1.0277 -0.0101 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.5229 1.9943 -1.3424 32 1 1.8644 3.1458 -1.1354 33 1 0.8593 3.1639 -4.7486 34 1 1.8579 3.1506 1.1271 35 1 0.4901 2.0234 1.2911 36 1 3.9064 2.6177 2.3511 37 1 1.9611 3.1960 3.7149 38 1 0.5862 2.0657 3.6999 39 1 0.5589 3.4953 5.2362 40 1 -0.1711 4.3347 7.4318 41 1 0.6696 3.2860 9.4939 42 1 2.2323 1.3892 9.3655 43 1 4.2536 0.5805 7.1416 44 1 3.0867 -0.4398 8.0168 45 1 3.0405 -0.3589 6.2393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267043137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = -64.111782 kcal Electronic energy + Delta-G solvation = -23477.123718 eV Core-core repulsion = 20073.876183 eV Total energy + Delta-G solvation = -3403.247535 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40437 -38.49562 -37.30236 -35.75399 -32.98897 -32.62495 -30.85294 -30.00857 -29.31026 -27.26824 -26.77424 -24.81691 -23.46618 -22.39358 -21.81284 -21.07093 -19.41574 -18.05940 -16.72101 -16.57234 -16.20976 -15.81253 -15.44121 -15.21754 -14.92565 -14.65831 -14.48799 -13.89024 -13.78791 -13.30342 -13.22069 -13.05515 -12.84530 -12.42510 -12.30262 -12.14418 -11.86377 -11.52955 -11.47968 -11.30136 -11.16898 -11.09156 -10.96370 -10.77275 -10.66978 -10.36794 -10.10662 -9.92949 -9.65424 -9.15887 -9.02352 -8.44629 -8.25395 -7.18702 -6.03936 -4.04520 1.12457 1.27395 3.01663 3.30613 3.38348 3.44050 3.57084 4.40368 4.53756 4.58353 4.60463 4.74917 4.87018 4.96332 5.02575 5.09271 5.20240 5.30727 5.32420 5.36507 5.48241 5.49769 5.55129 5.59367 5.68862 5.74537 5.92101 5.97155 6.07152 6.11923 6.16817 6.26210 6.28104 6.34478 6.40562 6.62543 6.66193 6.88232 7.24759 7.30990 7.39378 7.80300 7.92707 8.08289 8.17082 8.53252 9.04439 9.59906 11.06822 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033328 B = 0.002755 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.943958 B =10162.681770 C =10409.236624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 N -0.523 5.523 4 C 0.188 3.812 5 C -0.502 4.502 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.024 3.976 14 C 0.117 3.883 15 H 0.106 0.894 16 O -0.538 6.538 17 C 0.027 3.973 18 O -0.299 6.299 19 C 0.132 3.868 20 C -0.208 4.208 21 C -0.087 4.087 22 C -0.160 4.160 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.105 4.105 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.003 0.997 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.369 0.631 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 -0.601 22.807 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.246 5.246 4 C 0.064 3.936 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.106 4.106 14 C 0.057 3.943 15 H 0.124 0.876 16 O -0.342 6.342 17 C -0.049 4.049 18 O -0.212 6.212 19 C 0.086 3.914 20 C -0.227 4.227 21 C -0.105 4.105 22 C -0.178 4.178 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.162 4.162 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.021 0.979 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.216 0.784 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.717 -1.326 22.603 22.653 hybrid contribution -0.947 0.730 -0.968 1.538 sum -1.664 -0.596 21.634 21.706 Atomic orbital electron populations 1.22414 0.99570 1.01133 1.01821 1.22025 0.91815 0.91530 1.01683 1.62247 1.58891 1.01705 1.01751 1.19809 0.94811 0.93653 0.85373 1.21189 1.21548 1.21351 0.90012 0.91758 1.24981 0.95337 0.95285 0.99073 1.69960 1.32358 1.29508 1.22240 0.86459 0.79474 0.79117 0.82500 1.19598 1.21170 1.21055 1.22645 0.97385 0.98740 0.91792 1.21956 0.82005 1.01122 0.89256 0.87617 1.86641 1.20582 1.30437 1.96493 1.23727 0.98928 0.97206 0.85076 1.86154 1.66784 1.56619 1.11624 1.18936 0.93879 0.92983 0.85585 1.21299 1.02579 0.99554 0.99261 1.20927 0.98642 0.99037 0.91884 1.21010 1.00314 0.98208 0.98314 1.20879 0.96929 0.96263 0.96299 1.19317 1.01906 1.00210 0.90544 1.20613 0.97616 0.95177 1.02808 0.93902 0.91243 0.93271 0.89847 0.92778 0.97941 0.95866 0.93036 0.90978 0.94439 0.78428 0.91690 0.91374 0.85465 0.85970 0.86100 0.85580 0.91332 0.91901 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.26 37.16 0.34 -2.98 16 2 C 0.06 1.11 5.68 -3.82 -0.02 1.08 16 3 N -0.52 -10.87 4.64 -236.07 -1.10 -11.96 16 4 C 0.19 4.74 4.54 -4.98 -0.02 4.72 16 5 C -0.50 -13.92 8.39 -34.44 -0.29 -14.21 16 6 H 0.06 1.80 7.39 -52.49 -0.39 1.41 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.02 0.39 4.37 -3.82 -0.02 0.37 16 14 C 0.12 1.69 3.20 -26.73 -0.09 1.60 16 15 H 0.11 1.63 6.31 -51.93 -0.33 1.30 16 16 O -0.54 -8.51 13.25 -40.08 -0.53 -9.04 16 17 C 0.03 0.32 4.37 37.16 0.16 0.48 16 18 O -0.30 -4.01 9.15 -24.30 -0.22 -4.23 16 19 C 0.13 1.63 6.66 -39.22 -0.26 1.37 16 20 C -0.21 -2.28 9.04 -39.43 -0.36 -2.63 16 21 C -0.09 -0.83 10.04 -39.60 -0.40 -1.22 16 22 C -0.16 -1.44 10.04 -39.56 -0.40 -1.84 16 23 C -0.09 -0.81 9.70 -39.60 -0.38 -1.19 16 24 C -0.12 -1.34 5.89 -104.47 -0.62 -1.95 16 25 C -0.11 -1.05 9.79 36.01 0.35 -0.69 16 26 H 0.04 0.67 6.33 -51.93 -0.33 0.34 16 27 H 0.07 1.41 6.29 -51.93 -0.33 1.08 16 28 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.08 1.76 6.98 -51.93 -0.36 1.40 16 30 H 0.05 0.93 6.31 -51.93 -0.33 0.61 16 31 H 0.00 0.08 6.02 -51.93 -0.31 -0.24 16 32 H 0.02 0.63 7.91 -51.93 -0.41 0.21 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.16 7.92 -51.93 -0.41 0.75 16 35 H 0.04 0.60 6.05 -51.93 -0.31 0.28 16 36 H 0.37 4.65 9.04 45.56 0.41 5.07 16 37 H 0.06 0.69 7.65 -51.93 -0.40 0.30 16 38 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 39 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 40 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 45 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -31.36 360.19 -9.08 -40.43 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.28 Total: 4.15 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.09 Total: -15.68 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.36 Total: -37.64 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.75 Total: -13.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.36 -9.08 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267043137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.679 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds