Wall clock time and date at job start Tue Mar 31 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46931 * 2 1 4 4 C 1.46894 * 111.00292 * 296.16004 * 3 2 1 5 5 C 1.50703 * 109.47093 * 288.25011 * 4 3 2 6 6 H 1.07990 * 120.00097 * 4.86860 * 5 4 3 7 7 C 1.37882 * 119.99881 * 184.86707 * 5 4 3 8 8 N 1.31510 * 119.99946 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00109 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47298 * 89.99687 * 9 7 5 11 11 H 1.48498 * 109.46888 * 209.99876 * 9 7 5 12 12 H 1.48499 * 109.47003 * 329.99648 * 9 7 5 13 13 C 1.46905 * 110.99649 * 60.11298 * 3 2 1 14 14 C 1.53001 * 109.46859 * 77.30214 * 13 3 2 15 15 H 1.08996 * 109.47292 * 55.47725 * 14 13 3 16 16 O 1.42899 * 109.47194 * 295.46987 * 14 13 3 17 17 C 1.53008 * 109.46787 * 175.47325 * 14 13 3 18 18 O 1.42902 * 109.46890 * 184.99864 * 17 14 13 19 19 C 1.35897 * 116.99965 * 180.02562 * 18 17 14 20 20 C 1.38755 * 120.05456 * 359.72501 * 19 18 17 21 21 C 1.38118 * 119.94381 * 179.69874 * 20 19 18 22 22 C 1.38286 * 120.05677 * 0.59696 * 21 20 19 23 23 C 1.38249 * 120.11152 * 359.68166 * 22 21 20 24 24 C 1.50695 * 119.97621 * 180.02562 * 23 22 21 25 25 C 1.38173 * 120.05151 * 0.02562 * 23 22 21 26 26 H 1.09003 * 109.47163 * 61.44945 * 1 2 3 27 27 H 1.09003 * 109.46981 * 181.44494 * 1 2 3 28 28 H 1.09002 * 109.47407 * 301.44425 * 1 2 3 29 29 H 1.09002 * 109.47021 * 239.99983 * 2 1 3 30 30 H 1.09001 * 109.47020 * 120.00423 * 2 1 3 31 31 H 1.09002 * 109.47394 * 48.24957 * 4 3 2 32 32 H 1.08997 * 109.47686 * 168.24479 * 4 3 2 33 33 H 0.96993 * 120.00534 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46948 * 197.29816 * 13 3 2 35 35 H 1.08997 * 109.47233 * 317.29470 * 13 3 2 36 36 H 0.96703 * 114.00024 * 300.00690 * 16 14 13 37 37 H 1.08998 * 109.47034 * 304.99470 * 17 14 13 38 38 H 1.08999 * 109.46916 * 65.00054 * 17 14 13 39 39 H 1.08003 * 120.02827 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.97344 * 180.29985 * 21 20 19 41 41 H 1.08000 * 119.94826 * 179.69906 * 22 21 20 42 42 H 1.09006 * 109.46976 * 270.01901 * 24 23 22 43 43 H 1.09002 * 109.47261 * 30.01526 * 24 23 22 44 44 H 1.09003 * 109.47334 * 150.01793 * 24 23 22 45 45 H 1.08002 * 120.02390 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6251 2.0829 -1.2309 5 6 2.4273 1.5497 -2.3899 6 1 3.0999 0.7175 -2.2436 7 6 2.3025 2.1243 -3.6370 8 7 3.0030 1.6593 -4.6483 9 14 1.1396 3.5642 -3.8899 10 1 1.8674 4.8363 -3.6502 11 1 0.6227 3.5443 -5.2819 12 1 0.0044 3.4565 -2.9387 13 6 1.5507 2.1091 1.1891 14 6 2.3863 1.6935 2.4016 15 1 3.4425 1.8585 2.1888 16 8 2.1669 0.3090 2.6794 17 6 1.9740 2.5288 3.6155 18 8 2.8316 2.2237 4.7171 19 6 2.5986 2.8841 5.8817 20 6 1.5692 3.8111 5.9610 21 6 1.3304 4.4764 7.1476 22 6 2.1241 4.2284 8.2525 23 6 3.1540 3.3094 8.1745 24 6 4.0166 3.0411 9.3807 25 6 3.3931 2.6368 6.9915 26 1 -0.3634 0.4912 -0.9027 27 1 -0.3633 -1.0274 0.0259 28 1 -0.3634 0.5361 0.8767 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5638 1.9186 -1.4175 32 1 1.8132 3.1507 -1.1195 33 1 2.9155 2.0637 -5.5255 34 1 1.6555 3.1817 1.0261 35 1 0.5029 1.8698 1.3705 36 1 1.2464 0.0888 2.8780 37 1 2.0573 3.5881 3.3727 38 1 0.9430 2.2971 3.8826 39 1 0.9523 4.0090 5.0968 40 1 0.5262 5.1945 7.2112 41 1 1.9389 4.7532 9.1781 42 1 4.8675 3.7224 9.3776 43 1 3.4314 3.1948 10.2874 44 1 4.3749 2.0121 9.3495 45 1 4.1975 1.9187 6.9311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267161956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:14 Heat of formation + Delta-G solvation = -58.561627 kcal Electronic energy + Delta-G solvation = -23288.627337 eV Core-core repulsion = 19885.620476 eV Total energy + Delta-G solvation = -3403.006862 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37667 -38.71398 -37.56465 -35.76139 -32.75148 -32.51226 -31.45080 -30.17049 -29.37930 -27.57686 -27.09438 -24.86298 -23.05309 -22.75376 -21.73732 -21.01615 -19.43251 -17.88080 -16.93910 -16.65725 -16.58535 -16.15953 -15.50455 -15.37233 -15.01936 -14.51584 -14.25754 -14.08099 -13.75184 -13.65482 -13.47135 -13.07783 -13.05698 -12.55271 -12.37311 -12.25649 -12.00339 -11.78751 -11.63705 -11.32311 -11.24952 -11.07621 -11.05864 -10.80031 -10.66489 -10.60389 -10.32099 -9.91758 -9.43341 -9.21205 -9.02232 -8.56577 -8.35961 -7.33020 -6.04718 -4.01218 1.08452 1.25028 2.96222 3.26011 3.33871 3.34115 3.53203 4.40437 4.42093 4.46949 4.55951 4.65498 4.81857 4.91714 4.94888 5.07576 5.09617 5.18876 5.27543 5.28868 5.30607 5.32327 5.41924 5.47747 5.64842 5.70548 5.82954 5.84475 5.90005 6.04367 6.10821 6.19887 6.21590 6.35016 6.41137 6.46938 6.57117 6.84387 6.92303 7.06692 7.27729 7.60425 7.73520 7.90448 8.04994 8.66461 9.05783 9.56831 11.08711 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.002776 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.662892 B =10082.951586 C =10432.985046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 N -0.516 5.516 4 C 0.158 3.842 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.018 3.982 14 C 0.119 3.881 15 H 0.117 0.883 16 O -0.542 6.542 17 C 0.029 3.971 18 O -0.301 6.301 19 C 0.138 3.862 20 C -0.218 4.218 21 C -0.077 4.077 22 C -0.165 4.165 23 C -0.049 4.049 24 C -0.115 4.115 25 C -0.155 4.155 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.086 0.914 31 H -0.006 1.006 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.365 0.635 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 3.945 25.731 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.083 4.083 3 N -0.238 5.238 4 C 0.032 3.968 5 C -0.543 4.543 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.195 1.195 13 C -0.111 4.111 14 C 0.059 3.941 15 H 0.135 0.865 16 O -0.346 6.346 17 C -0.048 4.048 18 O -0.214 6.214 19 C 0.092 3.908 20 C -0.237 4.237 21 C -0.095 4.095 22 C -0.183 4.183 23 C -0.050 4.050 24 C -0.171 4.171 25 C -0.174 4.174 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.012 0.988 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.212 0.788 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.349 3.786 25.362 25.861 hybrid contribution -2.419 1.254 -0.417 2.756 sum -5.768 5.040 24.946 26.095 Atomic orbital electron populations 1.22427 1.00059 1.01130 1.01279 1.22352 0.91390 0.90836 1.03678 1.62049 1.58689 1.02026 1.01060 1.20280 0.94818 0.93694 0.88032 1.21018 1.24408 1.17844 0.91001 0.90131 1.24901 0.95613 0.96898 0.96000 1.69887 1.41210 1.41953 1.00912 0.86886 0.81837 0.83610 0.77511 1.20206 1.21227 1.19472 1.22729 0.96401 0.99494 0.92504 1.22037 1.02536 0.80441 0.89105 0.86534 1.86677 1.31826 1.24380 1.91703 1.23691 0.93633 1.00945 0.86490 1.86171 1.55488 1.61759 1.17990 1.19086 0.93863 0.91385 0.86441 1.21281 1.01095 1.01347 0.99938 1.20918 0.98390 0.97951 0.92235 1.20910 0.97488 1.00831 0.99087 1.19710 0.95671 0.94994 0.94576 1.20811 0.98935 1.02486 0.94905 1.20323 1.01995 1.04128 0.90957 0.92137 0.92952 0.93840 0.90064 0.89581 0.98831 0.96257 0.92692 0.90620 0.94296 0.78838 0.91061 0.91967 0.85561 0.85909 0.86113 0.90876 0.91372 0.91264 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 9.32 37.16 0.35 -2.71 16 2 C 0.05 0.84 5.68 -3.82 -0.02 0.82 16 3 N -0.52 -10.37 4.58 -236.07 -1.08 -11.46 16 4 C 0.16 3.73 3.66 -4.98 -0.02 3.71 16 5 C -0.50 -14.27 9.17 -34.44 -0.32 -14.58 16 6 H 0.08 2.51 7.59 -52.49 -0.40 2.11 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 9 Si 0.87 21.35 27.38 -169.99 -4.65 16.69 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.31 6.68 56.52 0.38 -5.93 16 13 C 0.02 0.28 4.68 -3.82 -0.02 0.26 16 14 C 0.12 1.64 3.49 -26.73 -0.09 1.55 16 15 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 16 O -0.54 -7.63 10.45 -40.08 -0.42 -8.05 16 17 C 0.03 0.33 4.37 37.16 0.16 0.49 16 18 O -0.30 -4.02 10.10 -24.27 -0.25 -4.26 16 19 C 0.14 1.68 6.69 -39.22 -0.26 1.42 16 20 C -0.22 -2.31 9.04 -39.43 -0.36 -2.66 16 21 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 22 C -0.16 -1.47 9.70 -39.56 -0.38 -1.85 16 23 C -0.05 -0.46 5.88 -104.64 -0.62 -1.08 16 24 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 25 C -0.16 -1.73 9.64 -39.43 -0.38 -2.11 16 26 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.60 6.01 -51.93 -0.31 0.29 16 29 H 0.08 1.74 7.09 -51.93 -0.37 1.37 16 30 H 0.09 1.46 5.44 -51.93 -0.28 1.18 16 31 H -0.01 -0.14 5.35 -51.93 -0.28 -0.42 16 32 H 0.02 0.46 6.83 -51.93 -0.35 0.10 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.08 1.14 7.62 -51.93 -0.40 0.74 16 35 H 0.04 0.54 5.57 -51.93 -0.29 0.25 16 36 H 0.37 3.90 9.03 45.56 0.41 4.31 16 37 H 0.07 0.74 7.65 -51.93 -0.40 0.35 16 38 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 39 H 0.13 1.17 6.30 -52.48 -0.33 0.84 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 44 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 45 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -32.32 355.76 -8.61 -40.93 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.26 Total: 4.06 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -2.09 Total: -16.41 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.31 Total: -38.32 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.66 Total: -12.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.65 Total: 16.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.32 -8.61 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267161956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.632 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds