Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46931 * 2 1 4 4 C 1.46894 * 111.00292 * 296.16004 * 3 2 1 5 5 C 1.50703 * 109.47093 * 288.25011 * 4 3 2 6 6 H 1.07990 * 120.00097 * 4.86860 * 5 4 3 7 7 C 1.37882 * 119.99881 * 184.86707 * 5 4 3 8 8 N 1.31510 * 119.99946 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00109 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47298 * 89.99687 * 9 7 5 11 11 H 1.48498 * 109.46888 * 209.99876 * 9 7 5 12 12 H 1.48499 * 109.47003 * 329.99648 * 9 7 5 13 13 C 1.46905 * 110.99649 * 60.11298 * 3 2 1 14 14 C 1.53001 * 109.46859 * 77.30214 * 13 3 2 15 15 H 1.08996 * 109.47292 * 55.47725 * 14 13 3 16 16 O 1.42899 * 109.47194 * 295.46987 * 14 13 3 17 17 C 1.53008 * 109.46787 * 175.47325 * 14 13 3 18 18 O 1.42902 * 109.46890 * 184.99864 * 17 14 13 19 19 C 1.35897 * 116.99965 * 180.02562 * 18 17 14 20 20 C 1.38755 * 120.05456 * 359.72501 * 19 18 17 21 21 C 1.38118 * 119.94381 * 179.69874 * 20 19 18 22 22 C 1.38286 * 120.05677 * 0.59696 * 21 20 19 23 23 C 1.38249 * 120.11152 * 359.68166 * 22 21 20 24 24 C 1.50695 * 119.97621 * 180.02562 * 23 22 21 25 25 C 1.38173 * 120.05151 * 0.02562 * 23 22 21 26 26 H 1.09003 * 109.47163 * 61.44945 * 1 2 3 27 27 H 1.09003 * 109.46981 * 181.44494 * 1 2 3 28 28 H 1.09002 * 109.47407 * 301.44425 * 1 2 3 29 29 H 1.09002 * 109.47021 * 239.99983 * 2 1 3 30 30 H 1.09001 * 109.47020 * 120.00423 * 2 1 3 31 31 H 1.09002 * 109.47394 * 48.24957 * 4 3 2 32 32 H 1.08997 * 109.47686 * 168.24479 * 4 3 2 33 33 H 0.96993 * 120.00534 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46948 * 197.29816 * 13 3 2 35 35 H 1.08997 * 109.47233 * 317.29470 * 13 3 2 36 36 H 0.96703 * 114.00024 * 300.00690 * 16 14 13 37 37 H 1.08998 * 109.47034 * 304.99470 * 17 14 13 38 38 H 1.08999 * 109.46916 * 65.00054 * 17 14 13 39 39 H 1.08003 * 120.02827 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.97344 * 180.29985 * 21 20 19 41 41 H 1.08000 * 119.94826 * 179.69906 * 22 21 20 42 42 H 1.09006 * 109.46976 * 270.01901 * 24 23 22 43 43 H 1.09002 * 109.47261 * 30.01526 * 24 23 22 44 44 H 1.09003 * 109.47334 * 150.01793 * 24 23 22 45 45 H 1.08002 * 120.02390 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6251 2.0829 -1.2309 5 6 2.4273 1.5497 -2.3899 6 1 3.0999 0.7175 -2.2436 7 6 2.3025 2.1243 -3.6370 8 7 3.0030 1.6593 -4.6483 9 14 1.1396 3.5642 -3.8899 10 1 1.8674 4.8363 -3.6502 11 1 0.6227 3.5443 -5.2819 12 1 0.0044 3.4565 -2.9387 13 6 1.5507 2.1091 1.1891 14 6 2.3863 1.6935 2.4016 15 1 3.4425 1.8585 2.1888 16 8 2.1669 0.3090 2.6794 17 6 1.9740 2.5288 3.6155 18 8 2.8316 2.2237 4.7171 19 6 2.5986 2.8841 5.8817 20 6 1.5692 3.8111 5.9610 21 6 1.3304 4.4764 7.1476 22 6 2.1241 4.2284 8.2525 23 6 3.1540 3.3094 8.1745 24 6 4.0166 3.0411 9.3807 25 6 3.3931 2.6368 6.9915 26 1 -0.3634 0.4912 -0.9027 27 1 -0.3633 -1.0274 0.0259 28 1 -0.3634 0.5361 0.8767 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5638 1.9186 -1.4175 32 1 1.8132 3.1507 -1.1195 33 1 2.9155 2.0637 -5.5255 34 1 1.6555 3.1817 1.0261 35 1 0.5029 1.8698 1.3705 36 1 1.2464 0.0888 2.8780 37 1 2.0573 3.5881 3.3727 38 1 0.9430 2.2971 3.8826 39 1 0.9523 4.0090 5.0968 40 1 0.5262 5.1945 7.2112 41 1 1.9389 4.7532 9.1781 42 1 4.8675 3.7224 9.3776 43 1 3.4314 3.1948 10.2874 44 1 4.3749 2.0121 9.3495 45 1 4.1975 1.9187 6.9311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267161956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = -81.489658 kcal Electronic energy + Delta-G solvation = -23289.621571 eV Core-core repulsion = 19885.620476 eV Total energy + Delta-G solvation = -3404.001096 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20244 -39.87844 -38.55242 -37.04475 -34.64606 -33.39963 -32.50471 -31.27510 -30.85260 -28.97975 -27.83266 -26.13935 -24.68797 -23.53932 -22.97603 -21.85276 -20.97334 -18.92090 -18.65570 -17.79120 -17.70152 -16.87921 -16.77229 -16.55680 -16.32132 -16.00127 -15.35885 -15.19376 -14.84665 -14.65871 -14.49434 -14.36268 -14.20821 -13.88748 -13.52546 -13.27989 -12.97149 -12.93013 -12.69312 -12.67560 -12.52880 -12.40650 -12.31294 -12.11718 -11.93027 -11.82113 -11.67292 -11.57710 -11.45662 -10.77310 -10.62314 -9.73463 -9.13372 -8.87162 -8.26954 -6.29569 0.36859 0.50164 1.33894 1.35867 1.46301 2.07710 2.34607 2.80670 3.05733 3.26958 3.45087 3.80888 3.90815 3.95961 4.02727 4.08540 4.18082 4.24316 4.29206 4.40703 4.43058 4.47829 4.50015 4.57498 4.61050 4.69027 4.77062 4.83895 4.87982 4.95426 5.02778 5.10288 5.18717 5.24943 5.29291 5.38318 5.50298 5.50489 5.60643 5.66326 5.88435 6.02853 6.44528 6.47482 6.70107 6.77031 6.84404 7.33237 8.90420 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.002776 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.662892 B =10082.951586 C =10432.985046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.169 3.831 5 C -0.512 4.512 6 H 0.030 0.970 7 C 0.002 3.998 8 N -0.952 5.952 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.247 1.247 13 C 0.021 3.979 14 C 0.128 3.872 15 H 0.088 0.912 16 O -0.558 6.558 17 C 0.036 3.964 18 O -0.325 6.325 19 C 0.113 3.887 20 C -0.227 4.227 21 C -0.080 4.080 22 C -0.167 4.167 23 C -0.054 4.054 24 C -0.114 4.114 25 C -0.177 4.177 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.103 0.897 31 H 0.000 1.000 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.382 0.618 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 6.010 28.466 29.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.079 4.079 3 N -0.264 5.264 4 C 0.042 3.958 5 C -0.551 4.551 6 H 0.048 0.952 7 C -0.194 4.194 8 N -0.593 5.593 9 Si 0.774 3.226 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.171 1.171 13 C -0.107 4.107 14 C 0.068 3.932 15 H 0.106 0.894 16 O -0.365 6.365 17 C -0.039 4.039 18 O -0.239 6.239 19 C 0.068 3.932 20 C -0.245 4.245 21 C -0.098 4.098 22 C -0.185 4.185 23 C -0.055 4.055 24 C -0.171 4.171 25 C -0.196 4.196 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.017 0.983 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.932 5.840 28.139 29.344 hybrid contribution -1.523 0.509 -1.164 1.984 sum -7.455 6.349 26.974 28.697 Atomic orbital electron populations 1.22316 0.97553 1.02640 1.01367 1.22273 0.93444 0.89938 1.02241 1.61876 1.60187 1.02823 1.01508 1.20013 0.93939 0.93858 0.88000 1.21293 1.23980 1.16509 0.93312 0.95173 1.25911 0.97656 1.00378 0.95458 1.70065 1.43551 1.44092 1.01639 0.85670 0.79811 0.79304 0.77852 1.19025 1.20977 1.17055 1.22782 0.97875 0.99324 0.90747 1.21755 1.00737 0.80866 0.89832 0.89392 1.86634 1.33513 1.24594 1.91730 1.23569 0.94379 1.00836 0.85156 1.86110 1.56423 1.62620 1.18789 1.19331 0.95145 0.92505 0.86188 1.21486 1.00844 1.01134 1.01053 1.21288 0.98886 0.97903 0.91750 1.21289 0.96818 1.00358 1.00076 1.20061 0.96095 0.94558 0.94747 1.20870 0.99018 1.02810 0.94355 1.20522 1.02353 1.04947 0.91788 0.94563 0.91028 0.90791 0.94545 0.87956 0.98272 0.95594 0.92542 0.89916 0.91742 0.76919 0.89964 0.89621 0.84344 0.83411 0.83644 0.90088 0.89711 0.91130 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.43 9.32 71.98 0.67 -4.76 16 2 C 0.05 1.81 5.68 86.30 0.49 2.30 16 3 N -0.54 -21.68 4.58 -900.79 -4.12 -25.80 16 4 C 0.17 7.91 3.66 85.56 0.31 8.23 16 5 C -0.51 -30.10 9.17 25.60 0.23 -29.86 16 6 H 0.03 2.01 7.59 -2.92 -0.02 1.99 16 7 C 0.00 0.15 5.47 84.66 0.46 0.61 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.95 43.93 27.38 68.60 1.88 45.81 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.25 -10.43 6.68 99.48 0.67 -9.76 16 13 C 0.02 0.61 4.68 86.30 0.40 1.01 16 14 C 0.13 3.39 3.49 30.60 0.11 3.50 16 15 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 16 O -0.56 -14.97 10.45 -144.34 -1.51 -16.48 16 17 C 0.04 0.76 4.37 71.98 0.31 1.07 16 18 O -0.33 -8.49 10.10 -87.76 -0.89 -9.37 16 19 C 0.11 2.66 6.69 22.51 0.15 2.81 16 20 C -0.23 -4.31 9.04 22.37 0.20 -4.11 16 21 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 22 C -0.17 -2.53 9.70 22.28 0.22 -2.31 16 23 C -0.05 -0.94 5.88 -19.88 -0.12 -1.05 16 24 C -0.11 -1.28 10.01 71.23 0.71 -0.56 16 25 C -0.18 -3.88 9.64 22.37 0.22 -3.66 16 26 H 0.04 1.27 6.33 -2.39 -0.02 1.25 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.76 6.01 -2.39 -0.01 1.75 16 29 H 0.04 1.65 7.09 -2.39 -0.02 1.63 16 30 H 0.10 3.44 5.44 -2.39 -0.01 3.43 16 31 H 0.00 -0.01 5.35 -2.39 -0.01 -0.02 16 32 H 0.03 1.18 6.83 -2.39 -0.02 1.17 16 33 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.08 2.27 7.62 -2.39 -0.02 2.25 16 35 H 0.06 1.54 5.57 -2.39 -0.01 1.53 16 36 H 0.38 7.15 9.03 -74.06 -0.67 6.48 16 37 H 0.08 1.53 7.65 -2.39 -0.02 1.51 16 38 H 0.09 1.38 7.67 -2.39 -0.02 1.36 16 39 H 0.14 2.16 6.30 -2.91 -0.02 2.15 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 44 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 45 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -73.80 355.76 0.54 -73.27 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.28 Total: 20.77 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.60 Total: -27.83 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -3.82 Total: -86.16 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -2.39 Total: -25.86 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Total: -73.80 0.54 -73.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267161956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.222 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds