Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.46787 * 2 1 4 4 C 1.46904 * 111.00207 * 68.70167 * 3 2 1 5 5 C 1.50700 * 109.47132 * 71.35230 * 4 3 2 6 6 H 1.07999 * 119.99926 * 5.05260 * 5 4 3 7 7 C 1.37873 * 119.99766 * 185.06021 * 5 4 3 8 8 N 1.31516 * 120.00069 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99813 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47113 * 89.99850 * 9 7 5 11 11 H 1.48494 * 109.47234 * 209.99749 * 9 7 5 12 12 H 1.48500 * 109.47077 * 329.99756 * 9 7 5 13 13 C 1.46907 * 111.00239 * 304.74507 * 3 2 1 14 14 C 1.53000 * 109.46836 * 287.05535 * 13 3 2 15 15 H 1.09000 * 109.47525 * 304.06816 * 14 13 3 16 16 O 1.42899 * 109.47145 * 64.07424 * 14 13 3 17 17 C 1.53005 * 109.46889 * 184.07323 * 14 13 3 18 18 O 1.42896 * 109.47141 * 175.00383 * 17 14 13 19 19 C 1.35905 * 116.99822 * 179.97438 * 18 17 14 20 20 C 1.38749 * 120.05342 * 359.72421 * 19 18 17 21 21 C 1.38128 * 119.93846 * 179.69951 * 20 19 18 22 22 C 1.38284 * 120.05845 * 0.59631 * 21 20 19 23 23 C 1.38248 * 120.11135 * 359.67726 * 22 21 20 24 24 C 1.50699 * 119.97557 * 179.97438 * 23 22 21 25 25 C 1.38171 * 120.05065 * 0.02562 * 23 22 21 26 26 H 1.09008 * 109.46992 * 185.18824 * 1 2 3 27 27 H 1.08996 * 109.47424 * 305.19022 * 1 2 3 28 28 H 1.09005 * 109.47359 * 65.19038 * 1 2 3 29 29 H 1.09004 * 109.47192 * 240.00192 * 2 1 3 30 30 H 1.08993 * 109.47621 * 120.00067 * 2 1 3 31 31 H 1.08991 * 109.47387 * 191.35544 * 4 3 2 32 32 H 1.09003 * 109.46720 * 311.35128 * 4 3 2 33 33 H 0.97000 * 119.99485 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46748 * 167.05888 * 13 3 2 35 35 H 1.08993 * 109.46601 * 47.05569 * 13 3 2 36 36 H 0.96696 * 114.00488 * 59.99202 * 16 14 13 37 37 H 1.09007 * 109.46539 * 295.00017 * 17 14 13 38 38 H 1.08997 * 109.47422 * 54.99531 * 17 14 13 39 39 H 1.08000 * 120.03556 * 359.97003 * 20 19 18 40 40 H 1.08003 * 119.97195 * 180.29297 * 21 20 19 41 41 H 1.08001 * 119.95040 * 179.69952 * 22 21 20 42 42 H 1.08992 * 109.47230 * 270.02273 * 24 23 22 43 43 H 1.08997 * 109.46496 * 30.02106 * 24 23 22 44 44 H 1.08996 * 109.46784 * 150.02334 * 24 23 22 45 45 H 1.08003 * 120.02133 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7254 2.0474 1.2778 5 6 2.6102 1.4757 2.3554 6 1 3.3756 0.7575 2.1010 7 6 2.4426 1.8696 3.6660 8 7 1.5108 2.7445 3.9756 9 14 3.5389 1.1604 5.0019 10 1 4.7431 2.0150 5.1595 11 1 2.7916 1.1169 6.2844 12 1 3.9537 -0.2145 4.6238 13 6 1.4581 2.1419 -1.1269 14 6 2.1185 1.6834 -2.4287 15 1 3.1999 1.7915 -2.3453 16 8 1.7939 0.3129 -2.6705 17 6 1.6084 2.5407 -3.5888 18 8 2.3098 2.1911 -4.7837 19 6 1.9739 2.8642 -5.9156 20 6 0.9853 3.8371 -5.8780 21 6 0.6502 4.5241 -7.0285 22 6 1.2902 4.2344 -8.2196 23 6 2.2716 3.2615 -8.2608 24 6 2.9668 2.9479 -9.5605 25 6 2.6148 2.5758 -7.1114 26 1 -0.3633 -1.0235 0.0929 27 1 -0.3634 0.5922 0.8398 28 1 -0.3634 0.4312 -0.9328 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9120 3.1171 1.1839 32 1 0.6803 1.8826 1.5403 33 1 1.3931 3.0218 4.8977 34 1 1.6455 3.2055 -0.9795 35 1 0.3838 1.9665 -1.1830 36 1 0.8460 0.1423 -2.7559 37 1 0.5418 2.3647 -3.7289 38 1 1.7764 3.5938 -3.3637 39 1 0.4814 4.0601 -4.9492 40 1 -0.1159 5.2848 -6.9989 41 1 1.0234 4.7692 -9.1191 42 1 2.4215 2.1626 -10.0839 43 1 2.9985 3.8436 -10.1808 44 1 3.9830 2.6107 -9.3568 45 1 3.3818 1.8161 -7.1440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267161958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = -63.675080 kcal Electronic energy + Delta-G solvation = -23259.846913 eV Core-core repulsion = 19856.618315 eV Total energy + Delta-G solvation = -3403.228598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33810 -38.66317 -37.49712 -35.58600 -32.72223 -32.56868 -31.39337 -30.09389 -29.06665 -27.34476 -26.85639 -24.70847 -23.17597 -22.73759 -21.83192 -20.97321 -19.44454 -17.82872 -16.79452 -16.58583 -16.19586 -16.12071 -15.43083 -15.26597 -15.03122 -14.47924 -14.28841 -14.06749 -13.67390 -13.49064 -13.43391 -13.08059 -12.89247 -12.38911 -12.35301 -12.16566 -11.76174 -11.74332 -11.45188 -11.23862 -11.10043 -11.01205 -10.96578 -10.81729 -10.63557 -10.51649 -10.25159 -9.99241 -9.38349 -9.07762 -8.99134 -8.42406 -8.32485 -7.18274 -6.02358 -4.03002 1.11654 1.28293 3.01255 3.32818 3.38688 3.43153 3.56430 4.41309 4.49655 4.54857 4.59268 4.74097 4.85779 4.97446 4.99945 5.12402 5.15996 5.28743 5.31945 5.33082 5.33722 5.40149 5.51147 5.57031 5.67564 5.81237 5.87123 5.96194 6.02648 6.14567 6.16297 6.24185 6.31141 6.37921 6.50501 6.60359 6.68447 7.02484 7.27198 7.32117 7.42081 7.78813 7.83462 8.10675 8.21530 8.55372 9.05876 9.61249 11.08193 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.002575 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.635159 B =10869.479968 C =10974.279355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.046 3.954 3 N -0.527 5.527 4 C 0.187 3.813 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.022 3.978 14 C 0.118 3.882 15 H 0.115 0.885 16 O -0.543 6.543 17 C 0.028 3.972 18 O -0.302 6.302 19 C 0.138 3.862 20 C -0.217 4.217 21 C -0.077 4.077 22 C -0.165 4.165 23 C -0.050 4.050 24 C -0.114 4.114 25 C -0.156 4.156 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.022 0.978 32 H 0.002 0.998 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.365 0.635 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 1.505 -23.625 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.082 4.082 3 N -0.250 5.250 4 C 0.063 3.937 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.107 4.107 14 C 0.058 3.942 15 H 0.133 0.867 16 O -0.348 6.348 17 C -0.048 4.048 18 O -0.215 6.215 19 C 0.092 3.908 20 C -0.236 4.236 21 C -0.095 4.095 22 C -0.183 4.183 23 C -0.050 4.050 24 C -0.171 4.171 25 C -0.174 4.174 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.020 0.980 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.212 0.788 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.634 1.372 -23.436 23.533 hybrid contribution -1.312 0.202 1.118 1.736 sum -2.947 1.574 -22.317 22.566 Atomic orbital electron populations 1.22400 1.00098 1.01177 1.00850 1.22330 0.91425 0.91310 1.03164 1.62219 1.57485 1.01886 1.03422 1.19825 0.95683 0.93936 0.84297 1.21161 1.16989 1.24905 0.91050 0.91838 1.24991 0.95640 0.95376 0.98720 1.69957 1.32924 1.32435 1.18787 0.86501 0.80423 0.79556 0.80963 1.20665 1.21395 1.19825 1.22653 0.96705 0.99258 0.92106 1.22052 1.02006 0.80563 0.89546 0.86730 1.86654 1.28627 1.25366 1.94114 1.23704 0.96233 1.00705 0.84122 1.86167 1.60723 1.59268 1.15320 1.19090 0.93441 0.91266 0.86972 1.21294 1.01606 1.00557 1.00152 1.20923 0.98389 0.98044 0.92110 1.20906 0.98945 1.00351 0.98142 1.19705 0.95659 0.94877 0.94770 1.20804 1.00228 1.02178 0.93893 1.20313 1.03503 1.03627 0.90002 0.93229 0.92094 0.94104 0.89669 0.90596 0.96002 0.98038 0.93005 0.90616 0.94550 0.78804 0.91968 0.91010 0.85499 0.85891 0.86132 0.90933 0.91373 0.91284 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 9.15 37.16 0.34 -2.80 16 2 C 0.05 0.88 5.48 -3.83 -0.02 0.86 16 3 N -0.53 -11.00 4.61 -236.07 -1.09 -12.09 16 4 C 0.19 4.77 4.63 -4.97 -0.02 4.74 16 5 C -0.50 -14.07 8.39 -34.44 -0.29 -14.36 16 6 H 0.06 1.79 7.68 -52.49 -0.40 1.39 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.02 0.36 4.58 -3.82 -0.02 0.35 16 14 C 0.12 1.69 3.47 -26.73 -0.09 1.60 16 15 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 16 O -0.54 -7.89 10.23 -40.08 -0.41 -8.30 16 17 C 0.03 0.34 4.37 37.16 0.16 0.50 16 18 O -0.30 -4.13 10.10 -24.29 -0.25 -4.37 16 19 C 0.14 1.72 6.69 -39.22 -0.26 1.46 16 20 C -0.22 -2.38 9.04 -39.43 -0.36 -2.74 16 21 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 22 C -0.17 -1.51 9.70 -39.56 -0.38 -1.89 16 23 C -0.05 -0.48 5.88 -104.64 -0.62 -1.09 16 24 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 25 C -0.16 -1.77 9.64 -39.43 -0.38 -2.15 16 26 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 27 H 0.06 1.20 6.26 -51.93 -0.33 0.87 16 28 H 0.04 0.59 5.65 -51.93 -0.29 0.29 16 29 H 0.09 1.52 5.53 -51.93 -0.29 1.23 16 30 H 0.08 1.64 7.17 -51.93 -0.37 1.27 16 31 H 0.02 0.59 7.73 -51.93 -0.40 0.19 16 32 H 0.00 0.05 6.11 -51.93 -0.32 -0.27 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.08 1.24 7.72 -51.93 -0.40 0.84 16 35 H 0.04 0.56 5.66 -51.93 -0.29 0.27 16 36 H 0.37 4.21 8.31 45.56 0.38 4.58 16 37 H 0.06 0.65 7.65 -51.92 -0.40 0.25 16 38 H 0.07 0.79 7.68 -51.93 -0.40 0.40 16 39 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 40 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 45 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -31.36 358.13 -9.06 -40.42 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.35 Total: 3.75 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.07 Total: -15.64 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.35 Total: -37.98 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.66 Total: -12.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.36 -9.06 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267161958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.259 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds