Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.46787 * 2 1 4 4 C 1.46904 * 111.00207 * 68.70167 * 3 2 1 5 5 C 1.50700 * 109.47132 * 71.35230 * 4 3 2 6 6 H 1.07999 * 119.99926 * 5.05260 * 5 4 3 7 7 C 1.37873 * 119.99766 * 185.06021 * 5 4 3 8 8 N 1.31516 * 120.00069 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99813 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47113 * 89.99850 * 9 7 5 11 11 H 1.48494 * 109.47234 * 209.99749 * 9 7 5 12 12 H 1.48500 * 109.47077 * 329.99756 * 9 7 5 13 13 C 1.46907 * 111.00239 * 304.74507 * 3 2 1 14 14 C 1.53000 * 109.46836 * 287.05535 * 13 3 2 15 15 H 1.09000 * 109.47525 * 304.06816 * 14 13 3 16 16 O 1.42899 * 109.47145 * 64.07424 * 14 13 3 17 17 C 1.53005 * 109.46889 * 184.07323 * 14 13 3 18 18 O 1.42896 * 109.47141 * 175.00383 * 17 14 13 19 19 C 1.35905 * 116.99822 * 179.97438 * 18 17 14 20 20 C 1.38749 * 120.05342 * 359.72421 * 19 18 17 21 21 C 1.38128 * 119.93846 * 179.69951 * 20 19 18 22 22 C 1.38284 * 120.05845 * 0.59631 * 21 20 19 23 23 C 1.38248 * 120.11135 * 359.67726 * 22 21 20 24 24 C 1.50699 * 119.97557 * 179.97438 * 23 22 21 25 25 C 1.38171 * 120.05065 * 0.02562 * 23 22 21 26 26 H 1.09008 * 109.46992 * 185.18824 * 1 2 3 27 27 H 1.08996 * 109.47424 * 305.19022 * 1 2 3 28 28 H 1.09005 * 109.47359 * 65.19038 * 1 2 3 29 29 H 1.09004 * 109.47192 * 240.00192 * 2 1 3 30 30 H 1.08993 * 109.47621 * 120.00067 * 2 1 3 31 31 H 1.08991 * 109.47387 * 191.35544 * 4 3 2 32 32 H 1.09003 * 109.46720 * 311.35128 * 4 3 2 33 33 H 0.97000 * 119.99485 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46748 * 167.05888 * 13 3 2 35 35 H 1.08993 * 109.46601 * 47.05569 * 13 3 2 36 36 H 0.96696 * 114.00488 * 59.99202 * 16 14 13 37 37 H 1.09007 * 109.46539 * 295.00017 * 17 14 13 38 38 H 1.08997 * 109.47422 * 54.99531 * 17 14 13 39 39 H 1.08000 * 120.03556 * 359.97003 * 20 19 18 40 40 H 1.08003 * 119.97195 * 180.29297 * 21 20 19 41 41 H 1.08001 * 119.95040 * 179.69952 * 22 21 20 42 42 H 1.08992 * 109.47230 * 270.02273 * 24 23 22 43 43 H 1.08997 * 109.46496 * 30.02106 * 24 23 22 44 44 H 1.08996 * 109.46784 * 150.02334 * 24 23 22 45 45 H 1.08003 * 120.02133 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7254 2.0474 1.2778 5 6 2.6102 1.4757 2.3554 6 1 3.3756 0.7575 2.1010 7 6 2.4426 1.8696 3.6660 8 7 1.5108 2.7445 3.9756 9 14 3.5389 1.1604 5.0019 10 1 4.7431 2.0150 5.1595 11 1 2.7916 1.1169 6.2844 12 1 3.9537 -0.2145 4.6238 13 6 1.4581 2.1419 -1.1269 14 6 2.1185 1.6834 -2.4287 15 1 3.1999 1.7915 -2.3453 16 8 1.7939 0.3129 -2.6705 17 6 1.6084 2.5407 -3.5888 18 8 2.3098 2.1911 -4.7837 19 6 1.9739 2.8642 -5.9156 20 6 0.9853 3.8371 -5.8780 21 6 0.6502 4.5241 -7.0285 22 6 1.2902 4.2344 -8.2196 23 6 2.2716 3.2615 -8.2608 24 6 2.9668 2.9479 -9.5605 25 6 2.6148 2.5758 -7.1114 26 1 -0.3633 -1.0235 0.0929 27 1 -0.3634 0.5922 0.8398 28 1 -0.3634 0.4312 -0.9328 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9120 3.1171 1.1839 32 1 0.6803 1.8826 1.5403 33 1 1.3931 3.0218 4.8977 34 1 1.6455 3.2055 -0.9795 35 1 0.3838 1.9665 -1.1830 36 1 0.8460 0.1423 -2.7559 37 1 0.5418 2.3647 -3.7289 38 1 1.7764 3.5938 -3.3637 39 1 0.4814 4.0601 -4.9492 40 1 -0.1159 5.2848 -6.9989 41 1 1.0234 4.7692 -9.1191 42 1 2.4215 2.1626 -10.0839 43 1 2.9985 3.8436 -10.1808 44 1 3.9830 2.6107 -9.3568 45 1 3.3818 1.8161 -7.1440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267161958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = -84.525351 kcal Electronic energy + Delta-G solvation = -23260.751048 eV Core-core repulsion = 19856.618315 eV Total energy + Delta-G solvation = -3404.132733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20914 -39.88822 -38.53081 -36.96756 -34.66992 -33.40034 -32.50779 -31.16418 -30.59972 -28.68840 -27.81108 -26.13822 -24.93537 -23.55470 -23.09069 -21.84977 -21.01023 -18.70159 -18.37500 -17.80383 -17.70095 -16.89334 -16.86648 -16.50505 -16.36726 -15.98800 -15.28657 -15.19938 -14.83803 -14.59323 -14.39995 -14.21548 -14.15617 -13.85422 -13.40212 -13.15225 -12.96657 -12.93009 -12.72671 -12.70576 -12.58509 -12.42084 -12.36500 -12.13122 -11.99009 -11.84290 -11.71350 -11.58316 -11.33990 -10.59790 -10.57164 -9.73455 -9.13741 -8.86837 -8.19295 -6.28411 0.36682 0.49985 1.39997 1.40873 1.52211 2.06627 2.40761 2.80492 3.12545 3.33279 3.42669 3.81398 3.90532 3.95147 4.02915 4.08377 4.18573 4.25955 4.29519 4.41524 4.44038 4.48052 4.53425 4.57861 4.65006 4.74223 4.84842 4.87702 4.94342 5.03339 5.03907 5.12906 5.25269 5.29987 5.37269 5.38336 5.50445 5.58209 5.66163 5.70030 5.88282 6.10570 6.41447 6.45293 6.68893 6.80779 6.88937 7.40936 8.90494 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.002575 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.635159 B =10869.479968 C =10974.279355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.203 3.797 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.025 3.975 14 C 0.132 3.868 15 H 0.093 0.907 16 O -0.555 6.555 17 C 0.037 3.963 18 O -0.323 6.323 19 C 0.113 3.887 20 C -0.228 4.228 21 C -0.081 4.081 22 C -0.167 4.167 23 C -0.054 4.054 24 C -0.114 4.114 25 C -0.175 4.175 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.043 0.957 31 H -0.002 1.002 32 H -0.019 1.019 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.380 0.620 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 1.476 -25.476 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.079 4.079 3 N -0.264 5.264 4 C 0.077 3.923 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.192 1.192 13 C -0.104 4.104 14 C 0.072 3.928 15 H 0.111 0.889 16 O -0.361 6.361 17 C -0.039 4.039 18 O -0.237 6.237 19 C 0.068 3.932 20 C -0.247 4.247 21 C -0.099 4.099 22 C -0.185 4.185 23 C -0.054 4.054 24 C -0.170 4.170 25 C -0.194 4.194 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.062 0.938 31 H 0.016 0.984 32 H -0.002 1.002 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.229 0.771 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.114 1.335 -25.315 25.438 hybrid contribution -1.184 0.221 1.570 1.979 sum -3.299 1.556 -23.745 24.023 Atomic orbital electron populations 1.22282 0.98115 1.02153 1.00942 1.22304 0.93080 0.90060 1.02418 1.62098 1.58774 1.02858 1.02720 1.19456 0.93903 0.92688 0.86231 1.21459 1.17214 1.24838 0.92286 0.92617 1.25847 0.96997 0.95643 1.01077 1.70069 1.34380 1.33551 1.19434 0.85450 0.78607 0.78985 0.77988 1.19940 1.20675 1.19194 1.22693 0.97689 0.98613 0.91423 1.21710 1.00606 0.81043 0.89466 0.88871 1.86609 1.30204 1.25315 1.94015 1.23542 0.96980 1.00363 0.83027 1.86102 1.61518 1.60100 1.15974 1.19342 0.94758 0.92355 0.86778 1.21479 1.01473 1.00494 1.01216 1.21281 0.98703 0.98126 0.91758 1.21288 0.98224 0.99935 0.99032 1.20071 0.95686 0.94417 0.95252 1.20866 1.00131 1.03267 0.92732 1.20519 1.03956 1.04349 0.90577 0.91158 0.95376 0.91147 0.87807 0.93801 0.98387 1.00159 0.92773 0.90938 0.92876 0.77051 0.89944 0.90223 0.84660 0.83528 0.83596 0.89932 0.89780 0.91107 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 9.15 71.98 0.66 -5.11 16 2 C 0.05 1.88 5.48 86.30 0.47 2.35 16 3 N -0.54 -22.97 4.61 -900.79 -4.15 -27.13 16 4 C 0.20 10.71 4.63 85.56 0.40 11.11 16 5 C -0.52 -29.89 8.39 25.60 0.21 -29.68 16 6 H 0.06 3.22 7.68 -2.91 -0.02 3.20 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.02 0.80 4.58 86.30 0.40 1.19 16 14 C 0.13 3.69 3.47 30.60 0.11 3.80 16 15 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 16 O -0.55 -15.31 10.23 -144.34 -1.48 -16.78 16 17 C 0.04 0.84 4.37 71.98 0.31 1.15 16 18 O -0.32 -8.71 10.10 -87.84 -0.89 -9.60 16 19 C 0.11 2.75 6.69 22.50 0.15 2.90 16 20 C -0.23 -4.67 9.04 22.37 0.20 -4.47 16 21 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 22 C -0.17 -2.64 9.70 22.28 0.22 -2.42 16 23 C -0.05 -0.95 5.88 -19.88 -0.12 -1.07 16 24 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 25 C -0.18 -3.90 9.64 22.37 0.22 -3.68 16 26 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.03 1.10 6.26 -2.39 -0.01 1.08 16 28 H 0.07 1.86 5.65 -2.38 -0.01 1.84 16 29 H 0.10 3.60 5.53 -2.38 -0.01 3.58 16 30 H 0.04 1.94 7.17 -2.39 -0.02 1.92 16 31 H 0.00 -0.11 7.73 -2.39 -0.02 -0.13 16 32 H -0.02 -1.08 6.11 -2.39 -0.01 -1.10 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.07 2.40 7.72 -2.39 -0.02 2.38 16 35 H 0.05 1.56 5.66 -2.39 -0.01 1.54 16 36 H 0.38 7.80 8.31 -74.06 -0.62 7.18 16 37 H 0.08 1.54 7.65 -2.38 -0.02 1.53 16 38 H 0.08 1.68 7.68 -2.39 -0.02 1.66 16 39 H 0.14 2.41 6.30 -2.91 -0.02 2.39 16 40 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 44 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 45 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -69.11 358.13 0.79 -68.32 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.37 Total: 19.10 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.63 Total: -25.05 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -3.87 Total: -83.07 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -2.36 Total: -26.38 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -69.11 0.79 -68.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267161958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.202 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds