Wall clock time and date at job start Tue Mar 31 2020 07:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34658 * 125.80465 * 2 1 4 4 H 0.96993 * 124.84792 * 359.97438 * 3 2 1 5 5 C 1.36444 * 110.29687 * 180.24852 * 3 2 1 6 6 C 1.34495 * 108.85781 * 359.61900 * 5 3 2 7 7 C 1.36776 * 125.79519 * 180.02562 * 2 1 3 8 8 C 1.47255 * 126.94521 * 359.94063 * 7 2 1 9 9 O 1.21625 * 120.00231 * 317.40728 * 8 7 2 10 10 N 1.34777 * 120.00052 * 137.40446 * 8 7 2 11 11 C 1.46502 * 119.99929 * 4.92466 * 10 8 7 12 12 C 1.50702 * 109.47242 * 95.32403 * 11 10 8 13 13 H 1.08001 * 119.99991 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00074 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99919 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47167 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47165 * 120.00314 * 16 14 12 19 19 H 1.48500 * 109.47286 * 240.00250 * 16 14 12 20 20 C 1.46500 * 120.00599 * 184.91890 * 10 8 7 21 21 C 1.52997 * 109.46796 * 89.99951 * 20 10 8 22 22 C 1.53008 * 109.47029 * 180.02562 * 21 20 10 23 23 N 1.46905 * 109.46948 * 180.02562 * 22 21 20 24 24 C 1.46899 * 110.99582 * 169.99668 * 23 22 21 25 25 C 1.46894 * 111.00203 * 293.95281 * 23 22 21 26 26 H 1.09002 * 109.47560 * 89.97306 * 1 2 3 27 27 H 1.08996 * 109.47642 * 209.97159 * 1 2 3 28 28 H 1.09003 * 109.47061 * 329.97418 * 1 2 3 29 29 H 1.08003 * 125.57400 * 179.77533 * 5 3 2 30 30 H 1.07999 * 126.83072 * 180.13700 * 6 5 3 31 31 H 1.08999 * 109.47199 * 215.32799 * 11 10 8 32 32 H 1.09001 * 109.47037 * 335.32438 * 11 10 8 33 33 H 0.97001 * 119.99948 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.47373 * 210.00171 * 20 10 8 35 35 H 1.08996 * 109.46948 * 330.00616 * 20 10 8 36 36 H 1.08997 * 109.47799 * 300.00378 * 21 20 10 37 37 H 1.09001 * 109.47278 * 60.00473 * 21 20 10 38 38 H 1.08993 * 109.46855 * 300.00046 * 22 21 20 39 39 H 1.08996 * 109.47234 * 60.00348 * 22 21 20 40 40 H 1.08998 * 109.47194 * 60.00437 * 24 23 22 41 41 H 1.09005 * 109.46605 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.47636 * 300.00331 * 24 23 22 43 43 H 1.09002 * 109.47356 * 59.99728 * 25 23 22 44 44 H 1.08998 * 109.47467 * 179.97438 * 25 23 22 45 45 H 1.09001 * 109.47249 * 300.00230 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6095 0.7273 -0.0056 6 6 3.6881 -0.6153 -0.0008 7 6 2.3069 -1.1094 -0.0005 8 6 1.8700 -2.5156 0.0001 9 8 0.9497 -2.8663 0.7138 10 7 2.4900 -3.4143 -0.7903 11 6 3.6661 -3.0172 -1.5683 12 6 4.9164 -3.3732 -0.8059 13 1 4.8423 -3.8482 0.1613 14 6 6.1549 -3.0936 -1.3435 15 7 6.2451 -2.5157 -2.5214 16 14 7.7045 -3.5355 -0.3988 17 1 7.3337 -4.1723 0.8904 18 1 8.5204 -4.4819 -1.2012 19 1 8.4915 -2.3041 -0.1349 20 6 1.9879 -4.7881 -0.8714 21 6 0.9585 -4.8891 -1.9988 22 6 0.4336 -6.3238 -2.0831 23 7 -0.5543 -6.4209 -3.1661 24 6 -0.9049 -7.8219 -3.4347 25 6 -1.7521 -5.6281 -2.8586 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.4498 1.4058 -0.0102 30 1 4.5889 -1.2111 -0.0012 31 1 3.6625 -3.5399 -2.5247 32 1 3.6405 -1.9414 -1.7421 33 1 7.1164 -2.3186 -2.8995 34 1 2.8165 -5.4665 -1.0741 35 1 1.5188 -5.0599 0.0742 36 1 0.1298 -4.2108 -1.7961 37 1 1.4275 -4.6173 -2.9444 38 1 1.2621 -7.0024 -2.2857 39 1 -0.0356 -6.5953 -1.1375 40 1 -1.3273 -8.2697 -2.5351 41 1 -1.6381 -7.8649 -4.2401 42 1 -0.0099 -8.3707 -3.7278 43 1 -1.4730 -4.5820 -2.7329 44 1 -2.4668 -5.7173 -3.6768 45 1 -2.2052 -5.9963 -1.9382 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267404031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:14 Heat of formation + Delta-G solvation = 9.617191 kcal Electronic energy + Delta-G solvation = -24264.336902 eV Core-core repulsion = 20896.579247 eV Total energy + Delta-G solvation = -3367.757655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60153 -38.51319 -37.42574 -34.98653 -32.87421 -31.56241 -31.10614 -30.10238 -27.56373 -27.26040 -26.34320 -25.28680 -22.92573 -22.82517 -20.90201 -20.31764 -19.96380 -17.56370 -17.00664 -16.38201 -15.67892 -15.63676 -15.16168 -14.90216 -14.59675 -14.30300 -14.14878 -13.65279 -13.52442 -13.08228 -12.73838 -12.46828 -12.36132 -12.23354 -12.19347 -12.07392 -11.94205 -11.72769 -11.45713 -11.25501 -11.17047 -11.09809 -10.88343 -10.77765 -10.57521 -10.15781 -9.98376 -9.59903 -8.95524 -8.50700 -8.29154 -7.93724 -7.62007 -7.43964 -6.08282 -4.13986 2.52534 3.24159 3.26287 3.35352 3.40617 3.66884 3.93793 4.17166 4.30412 4.47332 5.14349 5.19678 5.23402 5.30675 5.35289 5.42511 5.46522 5.59160 5.66414 5.70494 5.79697 5.82776 5.83279 5.83608 5.90610 6.05191 6.13260 6.25075 6.28299 6.33620 6.58564 6.68922 6.76468 6.96934 7.01360 7.09888 7.13458 7.44174 7.52946 7.67063 7.79748 7.87766 8.03467 8.21219 8.56015 8.93905 9.26489 9.51756 10.97576 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.005798 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.959513 B = 4827.944774 C = 6968.246966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.067 3.933 3 N -0.560 5.560 4 H 0.406 0.594 5 C -0.046 4.046 6 C -0.130 4.130 7 C -0.212 4.212 8 C 0.592 3.408 9 O -0.584 6.584 10 N -0.588 5.588 11 C 0.232 3.768 12 C -0.528 4.528 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.123 3.877 21 C -0.128 4.128 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.025 3.975 25 C 0.023 3.977 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.161 0.839 30 H 0.172 0.828 31 H 0.028 0.972 32 H 0.055 0.945 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.022 0.978 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 1.045 0.155 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 N -0.156 5.156 4 H 0.241 0.759 5 C -0.172 4.172 6 C -0.153 4.153 7 C -0.223 4.223 8 C 0.382 3.618 9 O -0.467 6.467 10 N -0.317 5.317 11 C 0.113 3.887 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.001 4.001 21 C -0.167 4.167 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.179 0.821 30 H 0.189 0.811 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.102 1.224 -0.066 11.170 hybrid contribution 0.725 -0.087 0.994 1.234 sum -10.377 1.136 0.929 10.480 Atomic orbital electron populations 1.20415 0.88196 1.03665 1.02398 1.20023 0.92914 0.86066 1.05917 1.41407 1.06308 1.07533 1.60374 0.75915 1.21695 0.85036 0.96816 1.13640 1.22874 0.97219 0.93022 1.02230 1.20140 0.93799 0.91933 1.16392 1.17439 0.80965 0.84644 0.78794 1.90621 1.32212 1.80867 1.43004 1.48010 1.30206 1.09133 1.44335 1.19604 0.80681 0.97842 0.90618 1.21533 0.90550 1.39975 1.04650 0.92160 1.24912 0.98848 0.95072 0.94909 1.69954 1.24600 1.41699 1.16387 0.86565 0.83228 0.78292 0.80174 1.19673 1.20998 1.20884 1.21152 0.96582 0.84454 0.97955 1.21943 0.99128 0.95264 1.00317 1.22088 0.94929 0.98312 0.91585 1.61972 1.12191 1.10293 1.42710 1.22366 1.01224 0.88889 0.99844 1.22419 0.91815 0.99168 0.99174 0.91443 0.88816 0.92257 0.82141 0.81074 0.95348 0.92732 0.92753 0.90462 0.91258 0.92074 0.90921 0.90622 0.94850 0.95945 0.91690 0.91356 0.90859 0.91846 0.95812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.23 36.00 0.37 -0.90 16 2 C 0.07 1.17 7.17 -81.88 -0.59 0.58 16 3 N -0.56 -8.26 5.90 -9.10 -0.05 -8.31 16 4 H 0.41 4.27 8.96 -40.82 -0.37 3.91 16 5 C -0.05 -0.78 11.89 -16.82 -0.20 -0.98 16 6 C -0.13 -2.72 8.68 -37.49 -0.33 -3.04 16 7 C -0.21 -4.48 5.32 -103.35 -0.55 -5.03 16 8 C 0.59 13.43 7.40 -12.60 -0.09 13.33 16 9 O -0.58 -13.85 15.31 5.26 0.08 -13.77 16 10 N -0.59 -13.09 2.46 -176.40 -0.43 -13.53 16 11 C 0.23 5.70 4.71 -5.19 -0.02 5.67 16 12 C -0.53 -13.74 7.34 -34.44 -0.25 -13.99 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 1.71 5.42 -17.82 -0.10 1.62 16 15 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 16 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.12 2.37 5.46 -4.04 -0.02 2.35 16 21 C -0.13 -2.15 5.46 -26.73 -0.15 -2.30 16 22 C 0.06 0.84 4.96 -3.82 -0.02 0.83 16 23 N -0.55 -7.37 5.02 -251.26 -1.26 -8.63 16 24 C 0.03 0.27 9.57 60.06 0.57 0.85 16 25 C 0.02 0.27 9.32 60.06 0.56 0.83 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.51 6.77 -51.93 -0.35 1.16 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.16 2.22 8.06 -52.48 -0.42 1.80 16 30 H 0.17 4.03 5.62 -52.49 -0.29 3.73 16 31 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.05 1.41 5.24 -51.93 -0.27 1.14 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 35 H 0.07 1.35 7.36 -51.93 -0.38 0.97 16 36 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.07 0.96 6.47 -51.93 -0.34 0.62 16 44 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 45 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -30.65 364.35 -8.64 -39.30 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.37 Total: 7.73 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.81 Total: -0.17 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.01 Total: -54.03 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.08 Total: -13.77 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.65 -8.64 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267404031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.913 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds