Wall clock time and date at job start Tue Mar 31 2020 07:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34658 * 125.80465 * 2 1 4 4 H 0.96993 * 124.84792 * 359.97438 * 3 2 1 5 5 C 1.36444 * 110.29687 * 180.24852 * 3 2 1 6 6 C 1.34495 * 108.85781 * 359.61900 * 5 3 2 7 7 C 1.36776 * 125.79519 * 180.02562 * 2 1 3 8 8 C 1.47255 * 126.94521 * 359.94063 * 7 2 1 9 9 O 1.21625 * 120.00231 * 317.40728 * 8 7 2 10 10 N 1.34777 * 120.00052 * 137.40446 * 8 7 2 11 11 C 1.46502 * 119.99929 * 4.92466 * 10 8 7 12 12 C 1.50702 * 109.47242 * 95.32403 * 11 10 8 13 13 H 1.08001 * 119.99991 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00074 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99919 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47167 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47165 * 120.00314 * 16 14 12 19 19 H 1.48500 * 109.47286 * 240.00250 * 16 14 12 20 20 C 1.46500 * 120.00599 * 184.91890 * 10 8 7 21 21 C 1.52997 * 109.46796 * 89.99951 * 20 10 8 22 22 C 1.53008 * 109.47029 * 180.02562 * 21 20 10 23 23 N 1.46905 * 109.46948 * 180.02562 * 22 21 20 24 24 C 1.46899 * 110.99582 * 169.99668 * 23 22 21 25 25 C 1.46894 * 111.00203 * 293.95281 * 23 22 21 26 26 H 1.09002 * 109.47560 * 89.97306 * 1 2 3 27 27 H 1.08996 * 109.47642 * 209.97159 * 1 2 3 28 28 H 1.09003 * 109.47061 * 329.97418 * 1 2 3 29 29 H 1.08003 * 125.57400 * 179.77533 * 5 3 2 30 30 H 1.07999 * 126.83072 * 180.13700 * 6 5 3 31 31 H 1.08999 * 109.47199 * 215.32799 * 11 10 8 32 32 H 1.09001 * 109.47037 * 335.32438 * 11 10 8 33 33 H 0.97001 * 119.99948 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.47373 * 210.00171 * 20 10 8 35 35 H 1.08996 * 109.46948 * 330.00616 * 20 10 8 36 36 H 1.08997 * 109.47799 * 300.00378 * 21 20 10 37 37 H 1.09001 * 109.47278 * 60.00473 * 21 20 10 38 38 H 1.08993 * 109.46855 * 300.00046 * 22 21 20 39 39 H 1.08996 * 109.47234 * 60.00348 * 22 21 20 40 40 H 1.08998 * 109.47194 * 60.00437 * 24 23 22 41 41 H 1.09005 * 109.46605 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.47636 * 300.00331 * 24 23 22 43 43 H 1.09002 * 109.47356 * 59.99728 * 25 23 22 44 44 H 1.08998 * 109.47467 * 179.97438 * 25 23 22 45 45 H 1.09001 * 109.47249 * 300.00230 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6095 0.7273 -0.0056 6 6 3.6881 -0.6153 -0.0008 7 6 2.3069 -1.1094 -0.0005 8 6 1.8700 -2.5156 0.0001 9 8 0.9497 -2.8663 0.7138 10 7 2.4900 -3.4143 -0.7903 11 6 3.6661 -3.0172 -1.5683 12 6 4.9164 -3.3732 -0.8059 13 1 4.8423 -3.8482 0.1613 14 6 6.1549 -3.0936 -1.3435 15 7 6.2451 -2.5157 -2.5214 16 14 7.7045 -3.5355 -0.3988 17 1 7.3337 -4.1723 0.8904 18 1 8.5204 -4.4819 -1.2012 19 1 8.4915 -2.3041 -0.1349 20 6 1.9879 -4.7881 -0.8714 21 6 0.9585 -4.8891 -1.9988 22 6 0.4336 -6.3238 -2.0831 23 7 -0.5543 -6.4209 -3.1661 24 6 -0.9049 -7.8219 -3.4347 25 6 -1.7521 -5.6281 -2.8586 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.4498 1.4058 -0.0102 30 1 4.5889 -1.2111 -0.0012 31 1 3.6625 -3.5399 -2.5247 32 1 3.6405 -1.9414 -1.7421 33 1 7.1164 -2.3186 -2.8995 34 1 2.8165 -5.4665 -1.0741 35 1 1.5188 -5.0599 0.0742 36 1 0.1298 -4.2108 -1.7961 37 1 1.4275 -4.6173 -2.9444 38 1 1.2621 -7.0024 -2.2857 39 1 -0.0356 -6.5953 -1.1375 40 1 -1.3273 -8.2697 -2.5351 41 1 -1.6381 -7.8649 -4.2401 42 1 -0.0099 -8.3707 -3.7278 43 1 -1.4730 -4.5820 -2.7329 44 1 -2.4668 -5.7173 -3.6768 45 1 -2.2052 -5.9963 -1.9382 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267404031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:13 Heat of formation + Delta-G solvation = -10.128252 kcal Electronic energy + Delta-G solvation = -24265.193129 eV Core-core repulsion = 20896.579247 eV Total energy + Delta-G solvation = -3368.613882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03189 -40.16422 -38.58309 -36.75837 -34.73883 -33.15410 -32.39094 -31.52364 -29.17909 -28.48818 -27.71580 -26.63472 -24.85052 -24.17709 -22.24658 -21.69498 -21.41110 -19.24853 -18.47504 -18.30913 -17.23633 -17.10785 -16.49435 -16.22779 -16.13015 -15.74897 -15.48895 -15.11021 -14.86605 -14.51287 -14.34178 -14.22116 -13.69802 -13.56139 -13.38201 -13.31225 -13.22328 -13.03267 -12.87787 -12.81025 -12.61613 -12.48473 -12.42624 -12.34355 -12.30421 -11.92296 -11.61197 -11.49926 -10.73703 -10.51667 -9.48028 -9.34332 -9.31102 -8.91963 -8.11943 -6.24634 1.04535 1.41963 1.45456 1.56127 1.73153 2.26759 2.41340 2.52208 2.71121 3.07213 3.16978 3.89429 4.05843 4.11538 4.17509 4.24735 4.40321 4.43692 4.47158 4.50897 4.57013 4.63536 4.68022 4.74026 4.77505 4.81274 4.88991 4.99862 5.01741 5.03441 5.10713 5.15831 5.24677 5.31036 5.40224 5.47091 5.75306 5.95771 6.04317 6.05657 6.13014 6.16568 6.21230 6.67490 6.86241 6.93324 7.40360 7.54241 8.93516 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.005798 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.959513 B = 4827.944774 C = 6968.246966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.082 3.918 3 N -0.535 5.535 4 H 0.432 0.568 5 C -0.021 4.021 6 C -0.174 4.174 7 C -0.262 4.262 8 C 0.585 3.415 9 O -0.602 6.602 10 N -0.594 5.594 11 C 0.254 3.746 12 C -0.532 4.532 13 H 0.045 0.955 14 C 0.028 3.972 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.274 1.274 20 C 0.121 3.879 21 C -0.110 4.110 22 C 0.067 3.933 23 N -0.565 5.565 24 C 0.025 3.975 25 C 0.023 3.977 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.196 0.804 30 H 0.138 0.862 31 H 0.007 0.993 32 H 0.043 0.957 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.714 2.168 0.233 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 N -0.133 5.133 4 H 0.272 0.728 5 C -0.148 4.148 6 C -0.198 4.198 7 C -0.272 4.272 8 C 0.377 3.623 9 O -0.487 6.487 10 N -0.323 5.323 11 C 0.133 3.867 12 C -0.571 4.571 13 H 0.063 0.937 14 C -0.172 4.172 15 N -0.554 5.554 16 Si 0.776 3.224 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.200 1.200 20 C -0.002 4.002 21 C -0.149 4.149 22 C -0.061 4.061 23 N -0.289 5.289 24 C -0.123 4.123 25 C -0.125 4.125 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.213 0.787 30 H 0.156 0.844 31 H 0.025 0.975 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.832 2.365 0.009 12.066 hybrid contribution 0.902 -0.384 0.973 1.382 sum -10.930 1.981 0.982 11.151 Atomic orbital electron populations 1.20471 0.85766 1.04497 1.03568 1.20396 0.94344 0.85615 1.03310 1.41341 1.05304 1.08375 1.58272 0.72814 1.22018 0.86617 0.95737 1.10474 1.22610 0.96212 0.94862 1.06106 1.20245 0.94851 0.92056 1.20094 1.17804 0.80634 0.85581 0.78311 1.90583 1.33049 1.81432 1.43655 1.48045 1.29802 1.10267 1.44165 1.19184 0.81185 0.96668 0.89689 1.21541 0.91559 1.39951 1.04040 0.93708 1.25523 1.01321 0.94776 0.95583 1.70038 1.25435 1.42417 1.17535 0.85626 0.79829 0.78224 0.78706 1.20019 1.20488 1.19972 1.21264 0.97028 0.83163 0.98783 1.21725 0.97817 0.97167 0.98201 1.21948 0.95601 0.96201 0.92389 1.61952 1.12632 1.12157 1.42142 1.22427 1.01914 0.87226 1.00695 1.22427 0.91731 0.98128 1.00187 0.90003 0.91060 0.88281 0.78729 0.84436 0.97508 0.93957 0.92443 0.90772 0.91547 0.92940 0.92535 0.90059 0.94466 0.95238 0.90119 0.90995 0.92372 0.89906 0.95433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 10.23 71.23 0.73 -1.51 16 2 C 0.08 2.73 7.17 41.78 0.30 3.03 16 3 N -0.54 -14.24 5.90 -182.72 -1.08 -15.32 16 4 H 0.43 7.21 8.96 -92.71 -0.83 6.38 16 5 C -0.02 -0.68 11.89 83.12 0.99 0.31 16 6 C -0.17 -7.42 8.68 23.62 0.21 -7.21 16 7 C -0.26 -11.27 5.32 -19.04 -0.10 -11.38 16 8 C 0.59 27.61 7.40 86.61 0.64 28.25 16 9 O -0.60 -29.48 15.31 -4.11 -0.06 -29.54 16 10 N -0.59 -27.82 2.46 -830.24 -2.04 -29.86 16 11 C 0.25 13.07 4.71 85.63 0.40 13.48 16 12 C -0.53 -28.79 7.34 25.60 0.19 -28.60 16 13 H 0.04 2.52 7.81 -2.91 -0.02 2.49 16 14 C 0.03 1.52 5.42 84.66 0.46 1.98 16 15 N -0.92 -50.93 13.29 21.45 0.28 -50.64 16 16 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.12 4.91 5.46 86.38 0.47 5.38 16 21 C -0.11 -3.85 5.46 30.60 0.17 -3.69 16 22 C 0.07 1.92 4.96 86.30 0.43 2.34 16 23 N -0.56 -14.72 5.02 -948.85 -4.76 -19.48 16 24 C 0.03 0.50 9.57 127.69 1.22 1.72 16 25 C 0.02 0.55 9.32 127.69 1.19 1.74 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 2.24 6.77 -2.39 -0.02 2.23 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.20 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.14 6.79 5.62 -2.91 -0.02 6.78 16 31 H 0.01 0.38 8.11 -2.39 -0.02 0.36 16 32 H 0.04 2.30 5.24 -2.39 -0.01 2.29 16 33 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.07 2.99 8.07 -2.39 -0.02 2.97 16 35 H 0.07 2.70 7.36 -2.39 -0.02 2.69 16 36 H 0.05 1.92 6.55 -2.39 -0.02 1.90 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.08 2.21 8.06 -2.39 -0.02 2.20 16 39 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 40 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 1.35 8.12 -2.38 -0.02 1.33 16 42 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 43 H 0.06 1.52 6.47 -2.39 -0.02 1.51 16 44 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 45 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -68.63 364.35 1.81 -66.82 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.15 Total: 27.60 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 7.29 Total: 5.84 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -7.60 Total: -115.30 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.06 Total: -29.54 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -68.63 1.81 -66.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267404031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.697 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds