Wall clock time and date at job start Tue Mar 31 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35988 * 117.00022 * 2 1 4 4 C 1.38694 * 119.99757 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.99612 * 180.02562 * 4 3 2 6 6 C 1.38690 * 120.00032 * 0.02562 * 5 4 3 7 7 O 1.35985 * 120.00299 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00033 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46785 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47036 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47049 * 180.02562 * 10 9 8 12 12 C 1.46895 * 111.00231 * 66.04958 * 11 10 9 13 13 C 1.46903 * 110.99984 * 190.00178 * 11 10 9 14 14 H 1.09007 * 109.47052 * 54.99665 * 13 11 10 15 15 C 1.53000 * 109.47096 * 295.00215 * 13 11 10 16 16 C 1.50694 * 109.47066 * 174.99980 * 13 11 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.38705 * 119.99941 * 0.25231 * 6 5 4 25 25 C 1.38129 * 119.99683 * 359.49089 * 24 6 5 26 26 H 1.08995 * 109.47230 * 59.99724 * 1 2 3 27 27 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47101 * 299.99325 * 1 2 3 29 29 H 1.07999 * 120.00302 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.99835 * 179.97438 * 5 4 3 31 31 H 1.08990 * 109.47223 * 60.00111 * 8 7 6 32 32 H 1.09003 * 109.47163 * 299.99464 * 8 7 6 33 33 H 1.09007 * 109.47086 * 59.99793 * 9 8 7 34 34 H 1.08994 * 109.47017 * 299.99865 * 9 8 7 35 35 H 1.09007 * 109.47170 * 60.00068 * 10 9 8 36 36 H 1.09000 * 109.47305 * 300.00398 * 10 9 8 37 37 H 1.08998 * 109.47176 * 183.95703 * 12 11 10 38 38 H 1.09001 * 109.46775 * 303.95460 * 12 11 10 39 39 H 1.09003 * 109.47375 * 63.94911 * 12 11 10 40 40 H 1.08998 * 109.47089 * 59.99840 * 15 13 11 41 41 H 1.08995 * 109.47131 * 180.02562 * 15 13 11 42 42 H 1.09002 * 109.47106 * 299.99893 * 15 13 11 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.08004 * 119.99601 * 179.73314 * 24 6 5 45 45 H 1.08007 * 119.99940 * 180.22945 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2842 0.0005 5 6 4.0585 2.5150 0.0011 6 6 3.3031 3.6782 0.0016 7 8 3.9204 4.8899 0.0027 8 6 3.0804 6.0459 0.0026 9 6 3.9476 7.3064 0.0032 10 6 3.0483 8.5442 0.0025 11 7 3.8810 9.7544 0.0025 12 6 4.6385 9.8722 -1.2505 13 6 3.0666 10.9537 0.2400 14 1 2.5019 10.8323 1.1645 15 6 2.0974 11.1515 -0.9273 16 6 3.9663 12.1571 0.3553 17 1 5.0361 12.0425 0.2620 18 6 3.4237 13.4044 0.5811 19 7 2.1210 13.5440 0.6953 20 14 4.5391 14.8960 0.7247 21 1 3.7158 16.1084 0.9647 22 1 5.4796 14.7035 1.8576 23 1 5.3084 15.0619 -0.5346 24 6 1.9180 3.6056 0.0069 25 6 1.2910 2.3748 0.0010 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 4.0196 0.3784 0.0005 30 1 5.1370 2.5716 0.0019 31 1 2.4505 6.0374 0.8920 32 1 2.4518 6.0383 -0.8879 33 1 4.5773 7.3147 -0.8866 34 1 4.5765 7.3143 0.8934 35 1 2.4184 8.5361 0.8921 36 1 2.4197 8.5360 -0.8879 37 1 5.2988 10.7378 -1.1959 38 1 5.2327 8.9710 -1.4020 39 1 3.9463 9.9951 -2.0835 40 1 1.4467 10.2810 -1.0106 41 1 1.4935 12.0416 -0.7513 42 1 2.6620 11.2729 -1.8517 43 1 1.7394 14.4215 0.8544 44 1 1.3298 4.5114 0.0117 45 1 0.2124 2.3182 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267935979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:52 Heat of formation + Delta-G solvation = -45.727603 kcal Electronic energy + Delta-G solvation = -22726.020675 eV Core-core repulsion = 19323.570338 eV Total energy + Delta-G solvation = -3402.450337 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57755 -39.18628 -37.51280 -36.49903 -33.43261 -31.83712 -31.35939 -29.52089 -28.43680 -27.36390 -26.34741 -25.16888 -24.27880 -22.67657 -21.95363 -20.89926 -19.18987 -18.57139 -17.71962 -16.67887 -16.27930 -16.13439 -15.93839 -15.22599 -15.02439 -14.62700 -14.36052 -14.12408 -13.76391 -13.67665 -13.27077 -13.08209 -12.84942 -12.66943 -12.21528 -12.10896 -11.81398 -11.56783 -11.34509 -11.28280 -11.04782 -10.87491 -10.75204 -10.68582 -10.58363 -10.49468 -10.15649 -10.02894 -9.76977 -9.30464 -8.88977 -8.39232 -7.91183 -7.16651 -6.01615 -4.05284 1.02838 1.27645 2.99393 3.17820 3.32617 3.36700 3.39973 3.52799 4.40999 4.49072 4.56356 4.76807 4.82134 4.91510 4.93987 5.00260 5.12207 5.15924 5.23373 5.29998 5.32306 5.44678 5.59017 5.66922 5.74957 5.87971 6.01379 6.05880 6.13240 6.21140 6.33213 6.36016 6.44998 6.52880 6.66385 6.80771 6.90520 7.07343 7.10680 7.37471 7.47870 7.70601 7.82540 8.10715 8.36889 8.58949 9.00338 9.59655 11.05550 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040978 B = 0.002209 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.134478 B =12673.318091 C =13106.553540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.082 3.918 4 C -0.112 4.112 5 C -0.116 4.116 6 C 0.103 3.897 7 O -0.313 6.313 8 C 0.062 3.938 9 C -0.114 4.114 10 C 0.059 3.941 11 N -0.535 5.535 12 C 0.031 3.969 13 C 0.211 3.789 14 H 0.039 0.961 15 C -0.172 4.172 16 C -0.500 4.500 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.278 1.278 24 C -0.171 4.171 25 C -0.167 4.167 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.018 0.982 40 H 0.006 0.994 41 H 0.088 0.912 42 H 0.030 0.970 43 H 0.260 0.740 44 H 0.132 0.868 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -23.871 -2.510 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.038 3.962 4 C -0.130 4.130 5 C -0.134 4.134 6 C 0.057 3.943 7 O -0.227 6.227 8 C -0.014 4.014 9 C -0.152 4.152 10 C -0.070 4.070 11 N -0.258 5.258 12 C -0.117 4.117 13 C 0.104 3.896 14 H 0.057 0.943 15 C -0.232 4.232 16 C -0.539 4.539 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.214 1.214 22 H -0.202 1.202 23 H -0.204 1.204 24 C -0.190 4.190 25 C -0.185 4.185 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.025 0.975 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.150 0.850 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.260 -23.883 -2.081 24.079 hybrid contribution -0.730 1.183 -0.627 1.525 sum -2.990 -22.700 -2.708 23.056 Atomic orbital electron populations 1.23022 0.78632 1.03785 1.01290 1.86059 1.21140 1.26789 1.89461 1.18889 0.92326 0.84157 1.00843 1.20215 0.91296 0.97827 1.03680 1.20274 1.00351 0.89021 1.03771 1.18962 0.90952 0.85947 0.98428 1.86096 1.36154 1.11922 1.88539 1.22871 0.93685 0.83689 1.01110 1.21579 0.98768 0.90798 1.04060 1.21866 0.94561 0.90294 1.00268 1.62309 1.27402 1.02709 1.33396 1.22284 0.97794 1.00875 0.90748 1.19315 0.90498 0.85895 0.93844 0.94332 1.22405 1.00227 1.00857 0.99676 1.21086 0.93425 0.90974 1.48383 0.91945 1.24942 0.95090 0.98950 0.95412 1.69877 1.10120 1.23613 1.49850 0.86565 0.80432 0.81817 0.78605 1.21422 1.20207 1.20380 1.21134 0.93587 0.98524 1.05709 1.21032 0.99981 0.91703 1.05825 0.92779 0.88358 0.92749 0.84602 0.84383 0.92019 0.92322 0.91032 0.90179 0.91434 0.95526 0.90857 0.93732 0.96403 0.97451 0.89343 0.95059 0.92966 0.84972 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.11 10.50 -19.70 -0.21 -3.32 16 3 C 0.08 0.86 6.68 -39.25 -0.26 0.60 16 4 C -0.11 -1.13 9.98 -39.45 -0.39 -1.52 16 5 C -0.12 -1.25 9.98 -39.45 -0.39 -1.64 16 6 C 0.10 1.26 6.69 -39.24 -0.26 0.99 16 7 O -0.31 -4.22 10.14 -19.69 -0.20 -4.42 16 8 C 0.06 0.78 4.74 37.16 0.18 0.95 16 9 C -0.11 -1.66 5.52 -26.73 -0.15 -1.81 16 10 C 0.06 1.03 4.40 -3.83 -0.02 1.01 16 11 N -0.53 -11.33 4.74 -236.29 -1.12 -12.45 16 12 C 0.03 0.61 8.70 60.06 0.52 1.13 16 13 C 0.21 5.25 2.34 -68.87 -0.16 5.09 16 14 H 0.04 1.06 8.03 -51.92 -0.42 0.64 16 15 C -0.17 -4.13 8.28 37.16 0.31 -3.82 16 16 C -0.50 -13.59 7.94 -34.44 -0.27 -13.87 16 17 H 0.06 1.70 6.75 -52.49 -0.35 1.34 16 18 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 19 N -0.90 -25.34 11.32 55.43 0.63 -24.72 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.17 -1.88 9.03 -39.45 -0.36 -2.24 16 25 C -0.17 -1.67 9.03 -39.45 -0.36 -2.02 16 26 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 32 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 33 H 0.07 1.05 6.47 -51.93 -0.34 0.71 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 36 H 0.03 0.46 6.94 -51.93 -0.36 0.10 16 37 H 0.07 1.53 6.53 -51.93 -0.34 1.19 16 38 H 0.04 0.75 6.30 -51.93 -0.33 0.42 16 39 H 0.02 0.34 6.28 -51.93 -0.33 0.02 16 40 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 41 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 42 H 0.03 0.73 6.39 -51.93 -0.33 0.39 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.13 1.30 6.29 -52.48 -0.33 0.97 16 45 H 0.13 1.00 6.29 -52.48 -0.33 0.67 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -29.75 354.42 -8.25 -38.00 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.95 Total: -0.18 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.72 Total: -14.52 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.49 Total: -37.17 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.41 Total: -7.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.75 -8.25 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267935979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.727 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds