Wall clock time and date at job start Tue Mar 31 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35986 * 116.99959 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.99517 * 359.72674 * 4 3 2 6 6 C 1.38142 * 119.99254 * 179.76668 * 5 4 3 7 7 C 1.38696 * 120.00185 * 0.50815 * 6 5 4 8 8 O 1.35972 * 119.99914 * 179.72775 * 7 6 5 9 9 C 1.42905 * 117.00352 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47242 * 180.02562 * 9 8 7 11 11 N 1.46905 * 109.47010 * 65.00132 * 10 9 8 12 12 C 1.46895 * 111.00312 * 66.04827 * 11 10 9 13 13 C 1.46904 * 110.99787 * 189.99969 * 11 10 9 14 14 H 1.09008 * 109.47074 * 299.99728 * 13 11 10 15 15 C 1.53002 * 109.47324 * 59.99696 * 13 11 10 16 16 C 1.50694 * 109.47379 * 179.97438 * 13 11 10 17 17 H 1.08007 * 119.99630 * 0.02562 * 16 13 11 18 18 C 1.37871 * 120.00204 * 179.97438 * 16 13 11 19 19 N 1.31519 * 120.00371 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 120.00112 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46909 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47073 * 119.99971 * 20 18 16 23 23 H 1.48497 * 109.47143 * 240.00164 * 20 18 16 24 24 C 1.38698 * 120.00033 * 359.73985 * 7 6 5 25 25 C 1.38133 * 119.99925 * 0.02562 * 24 7 6 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07991 * 120.00693 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.99354 * 180.22680 * 6 5 4 33 33 H 1.09001 * 109.46474 * 300.00207 * 9 8 7 34 34 H 1.08997 * 109.46754 * 60.00269 * 9 8 7 35 35 H 1.09005 * 109.47260 * 184.99887 * 10 9 8 36 36 H 1.08998 * 109.47366 * 305.00003 * 10 9 8 37 37 H 1.08998 * 109.47589 * 59.99530 * 12 11 10 38 38 H 1.09001 * 109.47402 * 180.02562 * 12 11 10 39 39 H 1.09007 * 109.46847 * 299.99692 * 12 11 10 40 40 H 1.08999 * 109.47071 * 60.00251 * 15 13 11 41 41 H 1.09003 * 109.47255 * 180.02562 * 15 13 11 42 42 H 1.09001 * 109.47310 * 300.00456 * 15 13 11 43 43 H 0.96995 * 120.00147 * 179.97438 * 19 18 16 44 44 H 1.07993 * 119.99998 * 179.97438 * 24 7 6 45 45 H 1.07998 * 120.00006 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3544 1.5256 0.0005 5 6 4.1992 0.4257 0.0068 6 6 5.5687 0.6068 0.0025 7 6 6.0988 1.8885 0.0025 8 8 7.4468 2.0667 0.0039 9 6 8.2569 0.8894 0.0046 10 6 9.7343 1.2870 0.0067 11 7 10.0533 1.9791 1.2627 12 6 9.9347 1.0694 2.4099 13 6 11.3914 2.5828 1.2058 14 1 12.1348 1.8036 1.0376 15 6 11.4458 3.5955 0.0601 16 6 11.6825 3.2826 2.5083 17 1 10.9472 3.2789 3.2994 18 6 12.8878 3.9268 2.6904 19 7 13.7834 3.9309 1.7273 20 14 13.2489 4.7936 4.3053 21 1 12.0878 4.6426 5.2186 22 1 14.4528 4.1911 4.9321 23 1 13.4935 6.2357 4.0491 24 6 5.2538 2.9884 0.0015 25 6 3.8844 2.8073 0.0009 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7866 -0.5723 0.0116 32 1 6.2266 -0.2497 0.0036 33 1 8.0386 0.2988 0.8944 34 1 8.0405 0.2990 -0.8856 35 1 10.3514 0.3929 -0.0823 36 1 9.9332 1.9509 -0.8346 37 1 10.6252 0.2353 2.2853 38 1 10.1758 1.6073 3.3267 39 1 8.9143 0.6905 2.4691 40 1 10.7024 4.3747 0.2284 41 1 12.4387 4.0431 0.0177 42 1 11.2350 3.0897 -0.8822 43 1 14.6312 4.3844 1.8553 44 1 5.6666 3.9863 0.0020 45 1 3.2265 3.6637 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268281917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:50 Heat of formation + Delta-G solvation = -41.856281 kcal Electronic energy + Delta-G solvation = -23201.702655 eV Core-core repulsion = 19799.420191 eV Total energy + Delta-G solvation = -3402.282464 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.38042 -39.04320 -37.19792 -36.08723 -32.91544 -32.04066 -31.13910 -30.03042 -28.89816 -28.08991 -25.52235 -24.40478 -24.11259 -22.72427 -21.62874 -21.12403 -19.29963 -18.52143 -17.64782 -16.36949 -16.30693 -16.12621 -15.86310 -14.89815 -14.85221 -14.17986 -14.08355 -13.85174 -13.64125 -13.49535 -13.35955 -13.16292 -12.70720 -12.43948 -12.37563 -12.12688 -11.86704 -11.76870 -11.51097 -11.27523 -11.08939 -10.93057 -10.77991 -10.60348 -10.41180 -10.12429 -10.06679 -9.99679 -9.72902 -9.08648 -8.83640 -8.40328 -7.64735 -7.14338 -5.99291 -4.03259 1.24330 1.51607 3.06334 3.31213 3.39078 3.43874 3.51665 3.75672 4.42186 4.60079 4.61210 4.74675 4.81669 4.91893 4.93047 5.11558 5.20016 5.28201 5.32430 5.42583 5.45676 5.46388 5.51884 5.63679 5.69011 5.85859 5.95413 6.09533 6.17062 6.25227 6.27222 6.37625 6.40496 6.60928 6.77955 6.88390 7.10050 7.18124 7.29783 7.53528 7.68276 7.77378 7.85297 8.23519 8.34047 8.61687 9.03305 9.61553 11.07635 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029976 B = 0.002668 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.849514 B =10492.665545 C =10739.965532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.079 3.921 5 C -0.168 4.168 6 C -0.177 4.177 7 C 0.109 3.891 8 O -0.288 6.288 9 C 0.067 3.933 10 C 0.048 3.952 11 N -0.529 5.529 12 C 0.034 3.966 13 C 0.211 3.789 14 H -0.003 1.003 15 C -0.132 4.132 16 C -0.500 4.500 17 H 0.064 0.936 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.284 1.284 24 C -0.114 4.114 25 C -0.110 4.110 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.009 0.991 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.008 0.992 43 H 0.259 0.741 44 H 0.140 0.860 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.002 -9.212 -5.249 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.035 3.965 5 C -0.187 4.187 6 C -0.196 4.196 7 C 0.062 3.938 8 O -0.201 6.201 9 C -0.008 4.008 10 C -0.081 4.081 11 N -0.254 5.254 12 C -0.115 4.115 13 C 0.106 3.894 14 H 0.015 0.985 15 C -0.190 4.190 16 C -0.539 4.539 17 H 0.082 0.918 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.133 4.133 25 C -0.129 4.129 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.028 0.972 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.027 0.973 43 H 0.069 0.931 44 H 0.157 0.843 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.178 -8.446 -5.219 23.389 hybrid contribution 0.973 -0.787 0.735 1.451 sum -20.205 -9.233 -4.483 22.663 Atomic orbital electron populations 1.21767 0.92936 1.02693 1.03473 1.22711 0.95687 0.82443 1.01171 1.86052 1.19109 1.28707 1.89584 1.18800 0.82131 0.94060 1.01500 1.20965 0.93529 0.97891 1.06295 1.21069 0.95419 0.96444 1.06697 1.19070 0.84216 0.93231 0.97247 1.86305 1.12573 1.33486 1.87696 1.22962 0.91466 0.86375 1.00047 1.22183 0.91180 0.98111 0.96591 1.62120 1.32739 1.30561 0.99994 1.22278 0.97843 0.94756 0.96577 1.19261 0.81983 0.92401 0.95782 0.98545 1.21846 1.03122 0.99372 0.94693 1.21191 1.00556 1.33002 0.99153 0.91785 1.24940 0.96193 0.96415 0.96819 1.69904 1.07343 1.44091 1.32001 0.86465 0.78074 0.79349 0.83666 1.19744 1.21221 1.21019 1.20313 0.91119 0.98443 1.03435 1.20208 0.94147 0.94884 1.03654 0.91548 0.91576 0.90541 0.92315 0.92274 0.85707 0.85397 0.92302 0.92790 0.93972 0.89511 0.97228 0.90258 0.94044 0.94476 0.89717 0.97347 0.93085 0.84250 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.44 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.63 10.14 -19.70 -0.20 -3.83 16 4 C 0.08 0.98 6.69 -39.24 -0.26 0.72 16 5 C -0.17 -1.96 9.03 -39.45 -0.36 -2.31 16 6 C -0.18 -2.28 9.03 -39.45 -0.36 -2.63 16 7 C 0.11 1.62 6.69 -39.24 -0.26 1.36 16 8 O -0.29 -4.92 10.09 -19.65 -0.20 -5.12 16 9 C 0.07 1.01 4.80 37.16 0.18 1.19 16 10 C 0.05 0.87 5.16 -3.82 -0.02 0.85 16 11 N -0.53 -11.55 4.57 -236.28 -1.08 -12.63 16 12 C 0.03 0.67 9.05 60.06 0.54 1.22 16 13 C 0.21 5.39 2.06 -68.86 -0.14 5.25 16 14 H 0.00 -0.08 8.14 -51.92 -0.42 -0.51 16 15 C -0.13 -3.28 8.76 37.16 0.33 -2.96 16 16 C -0.50 -13.82 7.88 -34.45 -0.27 -14.09 16 17 H 0.06 1.78 6.41 -52.48 -0.34 1.44 16 18 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 19 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 20 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.11 -1.57 9.98 -39.45 -0.39 -1.97 16 25 C -0.11 -1.37 9.98 -39.45 -0.39 -1.76 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.02 16 30 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 31 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 32 H 0.13 1.44 6.29 -52.49 -0.33 1.11 16 33 H 0.06 0.85 5.85 -51.93 -0.30 0.54 16 34 H 0.05 0.67 7.66 -51.93 -0.40 0.28 16 35 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.09 1.62 5.83 -51.93 -0.30 1.32 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 1.70 6.10 -51.93 -0.32 1.38 16 39 H 0.04 0.71 6.37 -51.92 -0.33 0.38 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 42 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -30.54 356.92 -8.43 -38.97 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.02 Total: -0.75 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.92 Total: -13.53 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.45 Total: -37.60 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.40 Total: -8.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.54 -8.43 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268281917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.884 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds