Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35986 * 116.99959 * 179.97438 * 3 2 1 5 5 C 1.38699 * 119.99517 * 359.72674 * 4 3 2 6 6 C 1.38142 * 119.99254 * 179.76668 * 5 4 3 7 7 C 1.38696 * 120.00185 * 0.50815 * 6 5 4 8 8 O 1.35972 * 119.99914 * 179.72775 * 7 6 5 9 9 C 1.42905 * 117.00352 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47242 * 180.02562 * 9 8 7 11 11 N 1.46905 * 109.47010 * 65.00132 * 10 9 8 12 12 C 1.46895 * 111.00312 * 66.04827 * 11 10 9 13 13 C 1.46904 * 110.99787 * 189.99969 * 11 10 9 14 14 H 1.09008 * 109.47074 * 299.99728 * 13 11 10 15 15 C 1.53002 * 109.47324 * 59.99696 * 13 11 10 16 16 C 1.50694 * 109.47379 * 179.97438 * 13 11 10 17 17 H 1.08007 * 119.99630 * 0.02562 * 16 13 11 18 18 C 1.37871 * 120.00204 * 179.97438 * 16 13 11 19 19 N 1.31519 * 120.00371 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 120.00112 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46909 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47073 * 119.99971 * 20 18 16 23 23 H 1.48497 * 109.47143 * 240.00164 * 20 18 16 24 24 C 1.38698 * 120.00033 * 359.73985 * 7 6 5 25 25 C 1.38133 * 119.99925 * 0.02562 * 24 7 6 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07991 * 120.00693 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.99354 * 180.22680 * 6 5 4 33 33 H 1.09001 * 109.46474 * 300.00207 * 9 8 7 34 34 H 1.08997 * 109.46754 * 60.00269 * 9 8 7 35 35 H 1.09005 * 109.47260 * 184.99887 * 10 9 8 36 36 H 1.08998 * 109.47366 * 305.00003 * 10 9 8 37 37 H 1.08998 * 109.47589 * 59.99530 * 12 11 10 38 38 H 1.09001 * 109.47402 * 180.02562 * 12 11 10 39 39 H 1.09007 * 109.46847 * 299.99692 * 12 11 10 40 40 H 1.08999 * 109.47071 * 60.00251 * 15 13 11 41 41 H 1.09003 * 109.47255 * 180.02562 * 15 13 11 42 42 H 1.09001 * 109.47310 * 300.00456 * 15 13 11 43 43 H 0.96995 * 120.00147 * 179.97438 * 19 18 16 44 44 H 1.07993 * 119.99998 * 179.97438 * 24 7 6 45 45 H 1.07998 * 120.00006 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3544 1.5256 0.0005 5 6 4.1992 0.4257 0.0068 6 6 5.5687 0.6068 0.0025 7 6 6.0988 1.8885 0.0025 8 8 7.4468 2.0667 0.0039 9 6 8.2569 0.8894 0.0046 10 6 9.7343 1.2870 0.0067 11 7 10.0533 1.9791 1.2627 12 6 9.9347 1.0694 2.4099 13 6 11.3914 2.5828 1.2058 14 1 12.1348 1.8036 1.0376 15 6 11.4458 3.5955 0.0601 16 6 11.6825 3.2826 2.5083 17 1 10.9472 3.2789 3.2994 18 6 12.8878 3.9268 2.6904 19 7 13.7834 3.9309 1.7273 20 14 13.2489 4.7936 4.3053 21 1 12.0878 4.6426 5.2186 22 1 14.4528 4.1911 4.9321 23 1 13.4935 6.2357 4.0491 24 6 5.2538 2.9884 0.0015 25 6 3.8844 2.8073 0.0009 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7866 -0.5723 0.0116 32 1 6.2266 -0.2497 0.0036 33 1 8.0386 0.2988 0.8944 34 1 8.0405 0.2990 -0.8856 35 1 10.3514 0.3929 -0.0823 36 1 9.9332 1.9509 -0.8346 37 1 10.6252 0.2353 2.2853 38 1 10.1758 1.6073 3.3267 39 1 8.9143 0.6905 2.4691 40 1 10.7024 4.3747 0.2284 41 1 12.4387 4.0431 0.0177 42 1 11.2350 3.0897 -0.8822 43 1 14.6312 4.3844 1.8553 44 1 5.6666 3.9863 0.0020 45 1 3.2265 3.6637 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268281917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = -60.274098 kcal Electronic energy + Delta-G solvation = -23202.501312 eV Core-core repulsion = 19799.420191 eV Total energy + Delta-G solvation = -3403.081120 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33763 -40.07757 -38.71851 -37.22781 -34.87973 -32.69142 -32.17398 -31.57233 -30.47861 -29.19797 -27.37117 -26.01151 -25.00605 -23.95821 -22.53999 -22.44683 -21.01253 -19.44334 -18.65594 -18.35729 -17.47142 -17.10167 -16.97163 -16.56276 -15.86817 -15.70691 -15.42811 -15.29592 -14.77695 -14.54756 -14.40584 -14.20779 -14.14127 -13.66251 -13.38029 -13.26249 -13.16120 -12.97177 -12.95123 -12.72577 -12.54515 -12.48852 -12.24662 -12.08806 -11.95778 -11.83985 -11.69596 -11.32555 -11.15157 -10.85184 -10.50719 -10.03747 -8.88332 -8.63868 -8.10936 -6.22001 0.29530 0.52760 1.40701 1.42893 1.54599 2.28221 2.42515 2.44562 2.78457 3.16768 3.35853 3.77375 3.87468 4.04085 4.09531 4.16718 4.19161 4.23872 4.35715 4.40992 4.46766 4.52425 4.55058 4.64974 4.73570 4.79156 4.84344 4.96992 4.97540 4.99905 5.05743 5.09117 5.13872 5.22166 5.28976 5.34810 5.40830 5.50975 5.65353 5.73097 5.80446 6.27108 6.40447 6.44855 6.64279 6.77704 6.92771 7.46804 8.95249 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029976 B = 0.002668 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.849514 B =10492.665545 C =10739.965532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.077 3.923 5 C -0.166 4.166 6 C -0.176 4.176 7 C 0.082 3.918 8 O -0.318 6.318 9 C 0.073 3.927 10 C 0.046 3.954 11 N -0.542 5.542 12 C 0.039 3.961 13 C 0.216 3.784 14 H -0.034 1.034 15 C -0.120 4.120 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.920 5.920 20 Si 0.960 3.040 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.281 1.281 24 C -0.128 4.128 25 C -0.117 4.117 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.013 0.987 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.136 0.864 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.879 -10.699 -5.042 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.032 3.968 5 C -0.185 4.185 6 C -0.194 4.194 7 C 0.037 3.963 8 O -0.232 6.232 9 C -0.002 4.002 10 C -0.082 4.082 11 N -0.267 5.267 12 C -0.110 4.110 13 C 0.109 3.891 14 H -0.016 1.016 15 C -0.178 4.178 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.189 4.189 19 N -0.560 5.560 20 Si 0.786 3.214 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.146 4.146 25 C -0.136 4.136 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.154 0.846 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.083 -9.950 -5.015 25.631 hybrid contribution 1.427 -0.386 0.627 1.605 sum -21.656 -10.336 -4.389 24.394 Atomic orbital electron populations 1.21800 0.91573 1.04096 1.03136 1.23035 0.96849 0.81024 1.02116 1.86054 1.18421 1.30992 1.89335 1.18972 0.82884 0.94208 1.00721 1.21256 0.93006 0.99039 1.05164 1.21269 0.96210 0.96069 1.05887 1.19278 0.83404 0.94468 0.99191 1.86240 1.13879 1.34583 1.88513 1.22911 0.89129 0.86151 1.01977 1.22252 0.93742 0.97978 0.94215 1.62031 1.30095 1.32308 1.02261 1.22236 0.99660 0.94137 0.94932 1.19046 0.83294 0.91689 0.95053 1.01619 1.21657 1.01208 0.99039 0.95901 1.21453 1.00663 1.33373 0.99989 0.92455 1.25718 0.96077 0.97114 1.00022 1.70022 1.07656 1.44696 1.33642 0.85476 0.77968 0.78167 0.79826 1.19330 1.20558 1.20675 1.20420 0.91772 0.98372 1.04078 1.20380 0.93812 0.95879 1.03483 0.91972 0.91843 0.88260 0.91191 0.91383 0.82991 0.83663 0.91366 0.89676 0.92726 0.90593 0.96858 0.92450 0.91089 0.95468 0.92149 0.94993 0.92961 0.84629 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.04 0.59 5.46 71.98 0.39 0.98 16 3 O -0.33 -6.92 10.14 -93.39 -0.95 -7.87 16 4 C 0.08 1.76 6.69 22.49 0.15 1.91 16 5 C -0.17 -3.43 9.03 22.36 0.20 -3.23 16 6 C -0.18 -4.10 9.03 22.36 0.20 -3.90 16 7 C 0.08 2.36 6.69 22.49 0.15 2.51 16 8 O -0.32 -10.63 10.09 -93.23 -0.94 -11.57 16 9 C 0.07 2.07 4.80 71.98 0.35 2.41 16 10 C 0.05 1.62 5.16 86.30 0.45 2.06 16 11 N -0.54 -23.60 4.57 -901.45 -4.12 -27.72 16 12 C 0.04 1.51 9.05 127.69 1.16 2.66 16 13 C 0.22 11.22 2.06 44.17 0.09 11.31 16 14 H -0.03 -1.91 8.14 -2.38 -0.02 -1.93 16 15 C -0.12 -6.07 8.76 71.98 0.63 -5.44 16 16 C -0.52 -29.01 7.88 25.60 0.20 -28.81 16 17 H 0.06 3.23 6.41 -2.91 -0.02 3.21 16 18 C 0.01 0.51 5.30 84.65 0.45 0.96 16 19 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 20 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 C -0.13 -3.49 9.98 22.35 0.22 -3.27 16 25 C -0.12 -2.81 9.98 22.35 0.22 -2.59 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.77 7.67 -2.39 -0.02 0.75 16 30 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 31 H 0.15 2.22 6.29 -2.92 -0.02 2.20 16 32 H 0.15 2.78 6.29 -2.91 -0.02 2.77 16 33 H 0.07 1.77 5.85 -2.39 -0.01 1.76 16 34 H 0.09 1.87 7.66 -2.39 -0.02 1.85 16 35 H 0.05 1.78 8.12 -2.38 -0.02 1.76 16 36 H 0.08 2.80 5.83 -2.39 -0.01 2.78 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.06 2.47 6.10 -2.39 -0.01 2.45 16 39 H 0.07 2.32 6.37 -2.38 -0.02 2.31 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 42 H 0.03 1.41 6.20 -2.39 -0.01 1.40 16 43 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -66.24 356.92 2.83 -63.41 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.97 Total: 13.67 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 5.60 Total: -23.08 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.88 Total: -81.07 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.89 Total: -19.43 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -66.24 2.83 -63.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268281917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.136 kcal (2) G-P(sol) polarization free energy of solvation -66.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds