Wall clock time and date at job start Tue Mar 31 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.46771 * 2 1 4 4 C 1.42910 * 113.99557 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46708 * 179.97438 * 4 3 2 6 6 C 1.38167 * 120.03235 * 359.73404 * 5 4 3 7 7 C 1.38244 * 120.05829 * 179.76536 * 6 5 4 8 8 C 1.50694 * 119.94548 * 180.24727 * 7 6 5 9 9 N 1.46501 * 109.47285 * 270.25360 * 8 7 6 10 10 C 1.36945 * 119.99901 * 90.00249 * 9 8 7 11 11 H 1.08001 * 119.99902 * 356.46310 * 10 9 8 12 12 C 1.38811 * 119.99778 * 176.47331 * 10 9 8 13 13 N 1.31620 * 120.00272 * 30.02632 * 12 10 9 14 14 Si 1.86800 * 119.99760 * 210.02864 * 12 10 9 15 15 H 1.48504 * 109.47083 * 84.99299 * 14 12 10 16 16 H 1.48499 * 109.47294 * 204.99062 * 14 12 10 17 17 H 1.48499 * 109.47037 * 324.99343 * 14 12 10 18 18 C 1.46501 * 120.00261 * 270.00064 * 9 8 7 19 19 C 1.52994 * 109.47066 * 92.85493 * 18 9 8 20 20 C 1.38287 * 120.10897 * 0.50533 * 7 6 5 21 21 C 1.38123 * 120.05591 * 359.74278 * 20 7 6 22 22 C 1.38716 * 120.02652 * 179.97438 * 5 4 3 23 23 O 1.35898 * 120.05585 * 0.02562 * 22 5 4 24 24 C 1.42897 * 116.99897 * 179.97438 * 23 22 5 25 25 H 1.09006 * 109.47014 * 60.00569 * 1 2 3 26 26 H 1.09002 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47922 * 300.00572 * 1 2 3 28 28 H 1.08989 * 109.47742 * 239.99562 * 2 1 3 29 29 H 1.09006 * 109.47014 * 119.99431 * 2 1 3 30 30 H 1.08997 * 109.47053 * 300.00083 * 4 3 2 31 31 H 1.09003 * 109.46760 * 59.99830 * 4 3 2 32 32 H 1.08001 * 119.96939 * 0.02562 * 6 5 4 33 33 H 1.09001 * 109.47514 * 30.25345 * 8 7 6 34 34 H 1.08997 * 109.47146 * 150.25519 * 8 7 6 35 35 H 0.97006 * 119.99721 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.46818 * 212.86106 * 18 9 8 37 37 H 1.09003 * 109.46490 * 332.85566 * 18 9 8 38 38 H 1.09003 * 109.47406 * 60.00634 * 19 18 9 39 39 H 1.09006 * 109.46865 * 179.97438 * 19 18 9 40 40 H 1.08999 * 109.47217 * 300.00419 * 19 18 9 41 41 H 1.08002 * 119.97109 * 179.72689 * 20 7 6 42 42 H 1.08000 * 120.02586 * 179.97438 * 21 20 7 43 43 H 1.09003 * 109.47232 * 299.99668 * 24 23 22 44 44 H 1.08993 * 109.47331 * 60.00219 * 24 23 22 45 45 H 1.09003 * 109.46654 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9162 -0.0001 6 6 2.8419 3.8927 -0.0067 7 6 3.1976 5.2286 -0.0024 8 6 2.1294 6.2915 -0.0040 9 7 1.7840 6.6347 -1.3857 10 6 0.7859 5.9544 -2.0311 11 1 0.2924 5.1276 -1.5422 12 6 0.4089 6.3276 -3.3139 13 7 1.2916 6.8645 -4.1294 14 14 -1.3513 6.0678 -3.8827 15 1 -2.1847 7.2204 -3.4557 16 1 -1.3818 5.9565 -5.3632 17 1 -1.8868 4.8201 -3.2813 18 6 2.5061 7.7056 -2.0770 19 6 3.6806 7.1090 -2.8551 20 6 4.5321 5.5911 -0.0021 21 6 5.5131 4.6187 -0.0007 22 6 5.1587 3.2773 0.0008 23 8 6.1220 2.3187 0.0018 24 6 7.4799 2.7637 0.0022 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.8332 0.9768 0.8908 31 1 3.8339 0.9764 -0.8892 32 1 1.7989 3.6121 -0.0109 33 1 1.2438 5.9174 0.5097 34 1 2.4993 7.1791 0.5092 35 1 1.0281 7.1249 -5.0259 36 1 1.8317 8.2114 -2.7680 37 1 2.8810 8.4218 -1.3457 38 1 3.3056 6.3929 -3.5864 39 1 4.2176 7.9059 -3.3698 40 1 4.3549 6.6033 -2.1640 41 1 4.8075 6.6354 -0.0032 42 1 6.5552 4.9024 -0.0009 43 1 7.6656 3.3646 -0.8881 44 1 7.6648 3.3656 0.8919 45 1 8.1452 1.9002 0.0035 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271147994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:17 Heat of formation + Delta-G solvation = -30.411400 kcal Electronic energy + Delta-G solvation = -24440.667819 eV Core-core repulsion = 21038.881642 eV Total energy + Delta-G solvation = -3401.786176 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93684 -37.90871 -37.33498 -35.51969 -32.46097 -31.51769 -30.36465 -30.18796 -28.68221 -27.34153 -25.84834 -24.97885 -23.03486 -22.71362 -21.39066 -20.67712 -19.76115 -17.70250 -16.74950 -16.38742 -16.06224 -15.63129 -15.48249 -15.10316 -14.66918 -13.87472 -13.80106 -13.65239 -13.59362 -13.47332 -12.99909 -12.48774 -12.27252 -12.14627 -11.95052 -11.78067 -11.71605 -11.33726 -11.31169 -11.10569 -10.92898 -10.82351 -10.60022 -10.57258 -10.27618 -10.18287 -9.82178 -9.64520 -9.52607 -9.29102 -8.25060 -8.16155 -7.51506 -6.86460 -5.71887 -2.92508 1.86575 1.98308 3.46970 3.50521 3.54808 3.55665 3.79717 4.24839 4.63088 5.05858 5.10515 5.12795 5.20146 5.29219 5.32560 5.36494 5.41437 5.48027 5.53316 5.62603 5.69559 5.71061 5.75234 5.87633 5.98502 6.06756 6.17623 6.20616 6.30034 6.60835 6.65204 6.70591 6.78831 6.88398 7.03041 7.14348 7.26523 7.29707 7.37410 7.50546 7.74628 7.80595 7.89317 8.23729 8.41505 9.32153 9.95385 10.39623 11.32211 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.006098 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.980777 B = 4590.446235 C = 6427.139710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.381 6.381 4 C 0.122 3.878 5 C -0.126 4.126 6 C -0.042 4.042 7 C -0.113 4.113 8 C 0.186 3.814 9 N -0.589 5.589 10 C -0.244 4.244 11 H 0.077 0.923 12 C 0.001 3.999 13 N -0.890 5.890 14 Si 0.886 3.114 15 H -0.290 1.290 16 H -0.295 1.295 17 H -0.282 1.282 18 C 0.164 3.836 19 C -0.150 4.150 20 C -0.072 4.072 21 C -0.209 4.209 22 C 0.109 3.891 23 O -0.324 6.324 24 C 0.031 3.969 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.134 0.866 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.003 0.997 38 H 0.087 0.913 39 H 0.014 0.986 40 H 0.017 0.983 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 -9.103 9.610 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.300 6.300 4 C 0.046 3.954 5 C -0.127 4.127 6 C -0.061 4.061 7 C -0.117 4.117 8 C 0.059 3.941 9 N -0.309 5.309 10 C -0.372 4.372 11 H 0.095 0.905 12 C -0.196 4.196 13 N -0.536 5.536 14 Si 0.716 3.284 15 H -0.217 1.217 16 H -0.222 1.222 17 H -0.207 1.207 18 C 0.039 3.961 19 C -0.209 4.209 20 C -0.091 4.091 21 C -0.228 4.228 22 C 0.064 3.936 23 O -0.238 6.238 24 C -0.064 4.064 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.021 0.979 38 H 0.106 0.894 39 H 0.033 0.967 40 H 0.036 0.964 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.801 -9.065 9.421 15.225 hybrid contribution -0.193 -0.274 -0.658 0.738 sum 7.607 -9.339 8.764 14.896 Atomic orbital electron populations 1.21740 0.93782 1.01851 1.03557 1.22401 0.95627 0.84067 0.99644 1.87924 1.20832 1.25858 1.95388 1.20862 0.80938 0.93576 1.00002 1.18880 0.90066 0.94876 1.08848 1.20690 0.99158 0.91061 0.95198 1.21157 0.95723 0.96067 0.98775 1.19810 0.93555 0.93020 0.87727 1.44478 1.39081 1.38349 1.09041 1.19275 1.07439 1.12587 0.97908 0.90470 1.24683 0.97899 1.01389 0.95666 1.70273 1.30596 1.46904 1.05781 0.86498 0.86988 0.77779 0.77104 1.21706 1.22217 1.20721 1.21020 0.93573 0.88538 0.92944 1.22379 0.97462 1.00527 1.00527 1.20747 0.92336 0.98382 0.97585 1.20980 0.99657 0.91797 1.10350 1.18510 0.87448 0.87483 1.00153 1.85980 1.14855 1.33470 1.89534 1.22938 0.80909 1.01354 1.01211 0.91480 0.91450 0.91831 0.93611 0.93788 0.92764 0.92611 0.84813 0.92586 0.93500 0.93940 0.89432 0.97887 0.89405 0.96709 0.96376 0.86579 0.86318 0.92868 0.93028 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.15 0.38 -1.36 16 2 C 0.06 0.75 6.66 37.15 0.25 0.99 16 3 O -0.38 -6.27 8.82 -35.23 -0.31 -6.58 16 4 C 0.12 1.94 5.80 36.00 0.21 2.15 16 5 C -0.13 -2.29 5.89 -104.47 -0.62 -2.90 16 6 C -0.04 -0.84 9.03 -39.61 -0.36 -1.19 16 7 C -0.11 -2.24 5.42 -104.60 -0.57 -2.81 16 8 C 0.19 3.86 5.83 -5.20 -0.03 3.83 16 9 N -0.59 -14.55 2.52 -174.61 -0.44 -14.99 16 10 C -0.24 -6.61 9.68 -15.06 -0.15 -6.76 16 11 H 0.08 2.09 7.99 -52.49 -0.42 1.67 16 12 C 0.00 0.02 4.97 -17.43 -0.09 -0.07 16 13 N -0.89 -25.18 8.37 55.49 0.46 -24.72 16 14 Si 0.89 21.82 29.65 -169.99 -5.04 16.78 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C 0.16 4.00 5.71 -4.04 -0.02 3.97 16 19 C -0.15 -3.59 9.68 37.15 0.36 -3.23 16 20 C -0.07 -1.29 7.67 -39.61 -0.30 -1.59 16 21 C -0.21 -3.44 9.04 -39.43 -0.36 -3.80 16 22 C 0.11 1.85 6.66 -39.22 -0.26 1.59 16 23 O -0.32 -4.82 9.92 -19.42 -0.19 -5.01 16 24 C 0.03 0.33 9.81 101.05 0.99 1.32 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.13 2.76 7.00 -52.49 -0.37 2.40 16 33 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 34 H 0.05 0.88 7.81 -51.93 -0.41 0.48 16 35 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.09 2.37 5.82 -51.93 -0.30 2.07 16 37 H 0.00 0.06 7.86 -51.93 -0.41 -0.35 16 38 H 0.09 2.43 6.30 -51.93 -0.33 2.10 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.40 5.69 -51.93 -0.30 0.10 16 41 H 0.12 1.96 7.89 -52.49 -0.41 1.55 16 42 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 43 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 44 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -30.14 360.30 -8.07 -38.21 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.42 Total: 0.75 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.56 Total: -9.86 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.03 Total: -39.71 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.50 Total: -11.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.04 Total: 16.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.14 -8.07 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271147994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.796 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds