Wall clock time and date at job start Tue Mar 31 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.46771 * 2 1 4 4 C 1.42910 * 113.99557 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46708 * 179.97438 * 4 3 2 6 6 C 1.38167 * 120.03235 * 359.73404 * 5 4 3 7 7 C 1.38244 * 120.05829 * 179.76536 * 6 5 4 8 8 C 1.50694 * 119.94548 * 180.24727 * 7 6 5 9 9 N 1.46501 * 109.47285 * 270.25360 * 8 7 6 10 10 C 1.36945 * 119.99901 * 90.00249 * 9 8 7 11 11 H 1.08001 * 119.99902 * 356.46310 * 10 9 8 12 12 C 1.38811 * 119.99778 * 176.47331 * 10 9 8 13 13 N 1.31620 * 120.00272 * 30.02632 * 12 10 9 14 14 Si 1.86800 * 119.99760 * 210.02864 * 12 10 9 15 15 H 1.48504 * 109.47083 * 84.99299 * 14 12 10 16 16 H 1.48499 * 109.47294 * 204.99062 * 14 12 10 17 17 H 1.48499 * 109.47037 * 324.99343 * 14 12 10 18 18 C 1.46501 * 120.00261 * 270.00064 * 9 8 7 19 19 C 1.52994 * 109.47066 * 92.85493 * 18 9 8 20 20 C 1.38287 * 120.10897 * 0.50533 * 7 6 5 21 21 C 1.38123 * 120.05591 * 359.74278 * 20 7 6 22 22 C 1.38716 * 120.02652 * 179.97438 * 5 4 3 23 23 O 1.35898 * 120.05585 * 0.02562 * 22 5 4 24 24 C 1.42897 * 116.99897 * 179.97438 * 23 22 5 25 25 H 1.09006 * 109.47014 * 60.00569 * 1 2 3 26 26 H 1.09002 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47922 * 300.00572 * 1 2 3 28 28 H 1.08989 * 109.47742 * 239.99562 * 2 1 3 29 29 H 1.09006 * 109.47014 * 119.99431 * 2 1 3 30 30 H 1.08997 * 109.47053 * 300.00083 * 4 3 2 31 31 H 1.09003 * 109.46760 * 59.99830 * 4 3 2 32 32 H 1.08001 * 119.96939 * 0.02562 * 6 5 4 33 33 H 1.09001 * 109.47514 * 30.25345 * 8 7 6 34 34 H 1.08997 * 109.47146 * 150.25519 * 8 7 6 35 35 H 0.97006 * 119.99721 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.46818 * 212.86106 * 18 9 8 37 37 H 1.09003 * 109.46490 * 332.85566 * 18 9 8 38 38 H 1.09003 * 109.47406 * 60.00634 * 19 18 9 39 39 H 1.09006 * 109.46865 * 179.97438 * 19 18 9 40 40 H 1.08999 * 109.47217 * 300.00419 * 19 18 9 41 41 H 1.08002 * 119.97109 * 179.72689 * 20 7 6 42 42 H 1.08000 * 120.02586 * 179.97438 * 21 20 7 43 43 H 1.09003 * 109.47232 * 299.99668 * 24 23 22 44 44 H 1.08993 * 109.47331 * 60.00219 * 24 23 22 45 45 H 1.09003 * 109.46654 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9162 -0.0001 6 6 2.8419 3.8927 -0.0067 7 6 3.1976 5.2286 -0.0024 8 6 2.1294 6.2915 -0.0040 9 7 1.7840 6.6347 -1.3857 10 6 0.7859 5.9544 -2.0311 11 1 0.2924 5.1276 -1.5422 12 6 0.4089 6.3276 -3.3139 13 7 1.2916 6.8645 -4.1294 14 14 -1.3513 6.0678 -3.8827 15 1 -2.1847 7.2204 -3.4557 16 1 -1.3818 5.9565 -5.3632 17 1 -1.8868 4.8201 -3.2813 18 6 2.5061 7.7056 -2.0770 19 6 3.6806 7.1090 -2.8551 20 6 4.5321 5.5911 -0.0021 21 6 5.5131 4.6187 -0.0007 22 6 5.1587 3.2773 0.0008 23 8 6.1220 2.3187 0.0018 24 6 7.4799 2.7637 0.0022 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.8332 0.9768 0.8908 31 1 3.8339 0.9764 -0.8892 32 1 1.7989 3.6121 -0.0109 33 1 1.2438 5.9174 0.5097 34 1 2.4993 7.1791 0.5092 35 1 1.0281 7.1249 -5.0259 36 1 1.8317 8.2114 -2.7680 37 1 2.8810 8.4218 -1.3457 38 1 3.3056 6.3929 -3.5864 39 1 4.2176 7.9059 -3.3698 40 1 4.3549 6.6033 -2.1640 41 1 4.8075 6.6354 -0.0032 42 1 6.5552 4.9024 -0.0009 43 1 7.6656 3.3646 -0.8881 44 1 7.6648 3.3656 0.8919 45 1 8.1452 1.9002 0.0035 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271147994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:17 Heat of formation + Delta-G solvation = -46.399105 kcal Electronic energy + Delta-G solvation = -24441.361098 eV Core-core repulsion = 21038.881642 eV Total energy + Delta-G solvation = -3402.479455 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20889 -39.08629 -38.73985 -37.23039 -33.88671 -33.12455 -31.96196 -31.49450 -30.39676 -28.40239 -27.27198 -26.55212 -24.84093 -23.74921 -22.75972 -22.37542 -21.33258 -18.91052 -18.56190 -17.76524 -17.18250 -17.00042 -16.73967 -16.50255 -16.15394 -15.56644 -15.28850 -15.19662 -14.99864 -14.66031 -14.46308 -14.01086 -13.68515 -13.49846 -13.32454 -13.16340 -13.10530 -12.82016 -12.71376 -12.61726 -12.38949 -12.35301 -12.22965 -12.02654 -11.86387 -11.76672 -11.52808 -11.49652 -11.25005 -10.67016 -10.19069 -9.62911 -8.98506 -8.73913 -7.79621 -5.00301 0.47672 0.59228 1.48512 1.52308 1.58040 2.42543 2.56760 2.69906 2.87689 3.27784 3.84436 3.89759 4.03273 4.16069 4.16538 4.22753 4.34315 4.41794 4.43595 4.48445 4.50900 4.52140 4.63849 4.65793 4.75633 4.77918 4.83520 4.93054 5.02738 5.04114 5.14024 5.23487 5.25440 5.26347 5.32912 5.42336 5.52526 5.68909 5.89035 5.89457 5.97508 6.22582 6.33456 6.38690 6.51339 7.26817 7.98987 8.38119 9.22671 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.006098 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.980777 B = 4590.446235 C = 6427.139710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.410 6.410 4 C 0.126 3.874 5 C -0.143 4.143 6 C -0.059 4.059 7 C -0.132 4.132 8 C 0.186 3.814 9 N -0.603 5.603 10 C -0.247 4.247 11 H 0.068 0.932 12 C -0.046 4.046 13 N -0.909 5.909 14 Si 0.941 3.059 15 H -0.289 1.289 16 H -0.300 1.300 17 H -0.279 1.279 18 C 0.167 3.833 19 C -0.134 4.134 20 C -0.076 4.076 21 C -0.206 4.206 22 C 0.114 3.886 23 O -0.332 6.332 24 C 0.020 3.980 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.244 0.756 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 -9.931 10.738 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.330 6.330 4 C 0.050 3.950 5 C -0.144 4.144 6 C -0.078 4.078 7 C -0.135 4.135 8 C 0.060 3.940 9 N -0.324 5.324 10 C -0.377 4.377 11 H 0.086 0.914 12 C -0.241 4.241 13 N -0.557 5.557 14 Si 0.771 3.229 15 H -0.216 1.216 16 H -0.228 1.228 17 H -0.205 1.205 18 C 0.043 3.957 19 C -0.193 4.193 20 C -0.094 4.094 21 C -0.224 4.224 22 C 0.069 3.931 23 O -0.246 6.246 24 C -0.075 4.075 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.594 -9.913 10.583 17.387 hybrid contribution -0.622 -0.119 -0.907 1.106 sum 8.972 -10.031 9.676 16.576 Atomic orbital electron populations 1.21770 0.93237 1.03415 1.02315 1.22662 0.96146 0.82677 1.01027 1.87906 1.21176 1.28291 1.95597 1.20861 0.80951 0.92393 1.00778 1.19166 0.90680 0.95773 1.08743 1.20592 0.98710 0.91824 0.96695 1.20984 0.96287 0.95535 1.00684 1.19893 0.94029 0.94299 0.85781 1.44558 1.39319 1.38381 1.10100 1.19380 1.08230 1.12202 0.97839 0.91421 1.25238 1.00372 1.02386 0.96087 1.70423 1.31334 1.48326 1.05587 0.85643 0.83540 0.77573 0.76135 1.21612 1.22765 1.20461 1.20876 0.92975 0.88797 0.93101 1.22159 0.97490 0.99952 0.99743 1.20912 0.91761 0.99503 0.97266 1.21313 1.00988 0.91239 1.08887 1.18603 0.87658 0.88192 0.98677 1.85983 1.16338 1.33268 1.89019 1.23314 0.78837 1.03245 1.02065 0.93486 0.88468 0.92269 0.92844 0.91637 0.90986 0.92496 0.86933 0.93041 0.91370 0.94627 0.92476 0.95273 0.93325 0.95349 0.95070 0.85250 0.83101 0.92502 0.91540 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 10.28 71.98 0.74 -2.62 16 2 C 0.05 1.23 6.66 71.98 0.48 1.71 16 3 O -0.41 -13.58 8.82 -148.98 -1.31 -14.89 16 4 C 0.13 3.93 5.80 71.23 0.41 4.34 16 5 C -0.14 -5.12 5.89 -19.77 -0.12 -5.24 16 6 C -0.06 -2.38 9.03 22.25 0.20 -2.18 16 7 C -0.13 -5.17 5.42 -19.85 -0.11 -5.28 16 8 C 0.19 7.68 5.83 85.63 0.50 8.18 16 9 N -0.60 -29.96 2.52 -706.35 -1.78 -31.73 16 10 C -0.25 -13.70 9.68 84.03 0.81 -12.89 16 11 H 0.07 3.80 7.99 -2.91 -0.02 3.78 16 12 C -0.05 -2.59 4.97 84.86 0.42 -2.17 16 13 N -0.91 -52.69 8.37 21.65 0.18 -52.51 16 14 Si 0.94 45.96 29.65 68.60 2.03 48.00 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 16 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 C 0.17 8.11 5.71 86.38 0.49 8.61 16 19 C -0.13 -6.36 9.68 71.98 0.70 -5.66 16 20 C -0.08 -2.58 7.67 22.25 0.17 -2.41 16 21 C -0.21 -6.23 9.04 22.36 0.20 -6.02 16 22 C 0.11 3.66 6.66 22.51 0.15 3.81 16 23 O -0.33 -8.94 9.92 -92.40 -0.92 -9.86 16 24 C 0.02 0.34 9.81 113.37 1.11 1.45 16 25 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.11 4.90 7.00 -2.91 -0.02 4.88 16 33 H 0.05 2.12 7.98 -2.39 -0.02 2.10 16 34 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 35 H 0.24 13.90 8.31 -92.70 -0.77 13.13 16 36 H 0.06 3.13 5.82 -2.39 -0.01 3.12 16 37 H 0.03 1.24 7.86 -2.39 -0.02 1.22 16 38 H 0.05 2.71 6.30 -2.39 -0.02 2.69 16 39 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.03 1.35 5.69 -2.39 -0.01 1.33 16 41 H 0.13 4.01 7.89 -2.91 -0.02 3.99 16 42 H 0.15 3.51 6.30 -2.91 -0.02 3.49 16 43 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 44 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 45 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -65.86 360.30 5.33 -60.53 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.95 Total: 16.85 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 6.17 Total: -16.38 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.60 Total: -84.24 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -2.23 Total: -24.75 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 48.00 kcal Total: -65.86 5.33 -60.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271147994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.129 kcal (2) G-P(sol) polarization free energy of solvation -65.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds