Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.35904 * 116.99628 * 180.02562 * 6 5 4 8 8 C 1.38758 * 120.05922 * 359.72826 * 7 6 5 9 9 C 1.38121 * 119.94303 * 179.69478 * 8 7 6 10 10 C 1.38284 * 120.05670 * 0.60266 * 9 8 7 11 11 C 1.38245 * 120.11162 * 359.67148 * 10 9 8 12 12 C 1.50704 * 119.97222 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47120 * 270.02470 * 12 11 10 14 14 C 1.46902 * 110.99707 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47177 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46867 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00296 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99643 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99829 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00142 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46841 * 90.00345 * 20 18 16 22 22 H 1.48501 * 109.47466 * 210.00233 * 20 18 16 23 23 H 1.48501 * 109.47372 * 330.00186 * 20 18 16 24 24 C 1.38173 * 120.05607 * 0.02881 * 11 10 9 25 25 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 28 28 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 31 31 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 34 34 H 1.08003 * 120.02200 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.96674 * 180.29445 * 9 8 7 36 36 H 1.08003 * 119.94493 * 179.69558 * 10 9 8 37 37 H 1.09002 * 109.46581 * 30.02752 * 12 11 10 38 38 H 1.08999 * 109.46711 * 150.02339 * 12 11 10 39 39 H 1.00903 * 110.99966 * 56.05092 * 13 12 11 40 40 H 1.08999 * 109.47119 * 300.00249 * 14 13 12 41 41 H 1.09002 * 109.46959 * 60.00222 * 14 13 12 42 42 H 1.08999 * 109.47375 * 300.00184 * 15 14 13 43 43 H 1.09002 * 109.46919 * 60.00290 * 15 14 13 44 44 H 0.97006 * 119.99433 * 179.97438 * 19 18 16 45 45 H 1.07998 * 120.02728 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2930 3.6278 0.0000 8 6 5.6328 4.8482 -0.0057 9 6 6.3574 6.0241 0.0007 10 6 7.7397 5.9858 0.0002 11 6 8.3999 4.7712 0.0001 12 6 9.9065 4.7332 -0.0011 13 7 10.3949 4.7209 -1.3864 14 6 11.8629 4.6845 -1.4266 15 6 12.3331 4.6720 -2.8825 16 6 13.8391 4.6352 -2.9237 17 1 14.4043 4.6217 -2.0036 18 6 14.4953 4.6189 -4.1362 19 7 15.8096 4.5863 -4.1722 20 14 13.5176 4.6416 -5.7278 21 1 13.2923 6.0474 -6.1502 22 1 14.2744 3.9227 -6.7840 23 1 12.2089 3.9730 -5.5145 24 6 7.6797 3.5921 0.0000 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8574 0.6435 -0.8892 31 1 3.8568 0.6438 0.8907 32 1 3.8364 3.1227 -0.8904 33 1 3.8359 3.1237 0.8896 34 1 4.5532 4.8786 -0.0106 35 1 5.8439 6.9742 0.0011 36 1 8.3045 6.9064 0.0002 37 1 10.2925 5.6137 0.5126 38 1 10.2476 3.8343 0.5125 39 1 10.0389 5.5116 -1.9023 40 1 12.2622 5.5648 -0.9230 41 1 12.2180 3.7854 -0.9229 42 1 11.9338 3.7914 -3.3857 43 1 11.9780 5.5708 -3.3867 44 1 16.2712 4.5745 -5.0253 45 1 8.1959 2.6435 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273017201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -72.372155 kcal Electronic energy + Delta-G solvation = -21881.646437 eV Core-core repulsion = 18478.040706 eV Total energy + Delta-G solvation = -3403.605731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33467 -38.57926 -37.94777 -35.86002 -33.50569 -33.03947 -31.60536 -30.20378 -29.22617 -27.64024 -25.94119 -25.24227 -23.28718 -22.67972 -22.12633 -20.89500 -20.31343 -17.95324 -17.02132 -17.01638 -16.74451 -16.14823 -15.99480 -15.93790 -15.41034 -15.22831 -14.42743 -14.16246 -14.01718 -13.86747 -13.64991 -13.44590 -12.77115 -12.66224 -12.49477 -12.38462 -12.28251 -11.94845 -11.80352 -11.59173 -11.53572 -11.30080 -10.99328 -10.97438 -10.82975 -10.20999 -10.05926 -9.86520 -9.77093 -9.21835 -8.89692 -8.51451 -8.30589 -7.92726 -6.02374 -4.00684 1.23506 1.38311 2.65780 3.34243 3.41820 3.48631 3.50737 3.66692 4.36891 4.48690 4.50439 4.57306 4.65068 4.75748 4.76419 4.79537 4.86559 4.88427 4.91431 4.98559 5.07662 5.17948 5.23401 5.27877 5.32369 5.43901 5.55187 5.63651 5.69721 5.85249 5.98214 6.18265 6.22142 6.26642 6.33725 6.56507 6.60911 6.69909 6.78564 7.13405 7.27990 7.39198 7.61002 7.76041 7.91029 8.55021 9.01634 9.60119 11.10873 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002155 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.350078 B =12988.132147 C =13814.728311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.065 3.935 6 O -0.313 6.313 7 C 0.126 3.874 8 C -0.214 4.214 9 C -0.082 4.082 10 C -0.151 4.151 11 C -0.034 4.034 12 C 0.094 3.906 13 N -0.688 5.688 14 C 0.073 3.927 15 C -0.010 4.010 16 C -0.521 4.521 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.263 1.263 24 C -0.128 4.128 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.337 0.663 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.009 0.991 44 H 0.263 0.737 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.477 -1.917 11.167 33.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.158 4.158 5 C -0.011 4.011 6 O -0.227 6.227 7 C 0.081 3.919 8 C -0.233 4.233 9 C -0.100 4.100 10 C -0.170 4.170 11 C -0.035 4.035 12 C -0.035 4.035 13 N -0.319 5.319 14 C -0.055 4.055 15 C -0.048 4.048 16 C -0.560 4.560 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.187 1.187 24 C -0.147 4.147 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.027 0.973 44 H 0.073 0.927 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -31.192 -2.983 10.982 33.203 hybrid contribution -0.586 1.417 -0.667 1.672 sum -31.778 -1.566 10.315 33.447 Atomic orbital electron populations 1.22771 0.80592 1.03044 1.00095 1.87878 1.20011 1.27560 1.95449 1.22321 0.93121 0.85081 1.00579 1.21371 0.92889 0.96231 1.05346 1.22544 0.79175 0.97785 1.01552 1.86047 1.18713 1.29015 1.88876 1.18950 0.91465 0.84545 0.96913 1.21159 0.99891 0.92272 1.09953 1.20856 0.93941 0.97407 0.97843 1.21003 0.94329 0.97568 1.04118 1.19716 0.95679 0.92114 0.95993 1.20912 0.89289 1.01445 0.91815 1.60656 1.11282 1.49044 1.10918 1.21994 0.83676 0.99696 1.00141 1.19552 0.96802 0.96782 0.91668 1.21072 0.89515 1.50982 0.94410 0.91088 1.25006 0.94761 0.94473 0.99182 1.69921 1.07243 1.51125 1.25994 0.86752 0.80805 0.78407 0.83212 1.20414 1.21427 1.18719 1.20325 0.90229 0.99294 1.04856 0.93910 0.89376 0.93945 0.92951 0.92882 0.89691 0.89783 0.91845 0.91928 0.85915 0.85971 0.86030 0.94396 0.90126 0.84617 0.95885 0.91558 0.95581 0.97286 0.92747 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.19 10.70 -35.23 -0.38 -3.57 16 3 C 0.07 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.90 5.95 -26.73 -0.16 -1.06 16 5 C 0.07 0.51 4.74 37.16 0.18 0.69 16 6 O -0.31 -3.64 10.14 -19.44 -0.20 -3.83 16 7 C 0.13 1.55 6.69 -39.22 -0.26 1.29 16 8 C -0.21 -2.24 9.04 -39.43 -0.36 -2.60 16 9 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 10 C -0.15 -1.77 9.70 -39.56 -0.38 -2.15 16 11 C -0.03 -0.45 5.39 -104.64 -0.56 -1.02 16 12 C 0.09 1.34 5.81 -4.98 -0.03 1.31 16 13 N -0.69 -11.85 6.49 -115.06 -0.75 -12.60 16 14 C 0.07 1.48 5.62 -3.82 -0.02 1.46 16 15 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 16 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 20 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 24 C -0.13 -1.71 9.64 -39.43 -0.38 -2.09 16 25 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 33 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 34 H 0.12 0.98 6.30 -52.48 -0.33 0.65 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.34 5.54 8.72 -39.29 -0.34 5.20 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 43 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -32.89 373.55 -8.92 -41.81 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.74 Total: -0.08 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.59 Total: -17.44 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.03 Total: -40.03 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.57 Total: -7.40 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.89 -8.92 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273017201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.561 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds