Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.35904 * 116.99628 * 180.02562 * 6 5 4 8 8 C 1.38758 * 120.05922 * 359.72826 * 7 6 5 9 9 C 1.38121 * 119.94303 * 179.69478 * 8 7 6 10 10 C 1.38284 * 120.05670 * 0.60266 * 9 8 7 11 11 C 1.38245 * 120.11162 * 359.67148 * 10 9 8 12 12 C 1.50704 * 119.97222 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47120 * 270.02470 * 12 11 10 14 14 C 1.46902 * 110.99707 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47177 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46867 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00296 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99643 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99829 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00142 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46841 * 90.00345 * 20 18 16 22 22 H 1.48501 * 109.47466 * 210.00233 * 20 18 16 23 23 H 1.48501 * 109.47372 * 330.00186 * 20 18 16 24 24 C 1.38173 * 120.05607 * 0.02881 * 11 10 9 25 25 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 28 28 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 31 31 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 34 34 H 1.08003 * 120.02200 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.96674 * 180.29445 * 9 8 7 36 36 H 1.08003 * 119.94493 * 179.69558 * 10 9 8 37 37 H 1.09002 * 109.46581 * 30.02752 * 12 11 10 38 38 H 1.08999 * 109.46711 * 150.02339 * 12 11 10 39 39 H 1.00903 * 110.99966 * 56.05092 * 13 12 11 40 40 H 1.08999 * 109.47119 * 300.00249 * 14 13 12 41 41 H 1.09002 * 109.46959 * 60.00222 * 14 13 12 42 42 H 1.08999 * 109.47375 * 300.00184 * 15 14 13 43 43 H 1.09002 * 109.46919 * 60.00290 * 15 14 13 44 44 H 0.97006 * 119.99433 * 179.97438 * 19 18 16 45 45 H 1.07998 * 120.02728 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2930 3.6278 0.0000 8 6 5.6328 4.8482 -0.0057 9 6 6.3574 6.0241 0.0007 10 6 7.7397 5.9858 0.0002 11 6 8.3999 4.7712 0.0001 12 6 9.9065 4.7332 -0.0011 13 7 10.3949 4.7209 -1.3864 14 6 11.8629 4.6845 -1.4266 15 6 12.3331 4.6720 -2.8825 16 6 13.8391 4.6352 -2.9237 17 1 14.4043 4.6217 -2.0036 18 6 14.4953 4.6189 -4.1362 19 7 15.8096 4.5863 -4.1722 20 14 13.5176 4.6416 -5.7278 21 1 13.2923 6.0474 -6.1502 22 1 14.2744 3.9227 -6.7840 23 1 12.2089 3.9730 -5.5145 24 6 7.6797 3.5921 0.0000 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8574 0.6435 -0.8892 31 1 3.8568 0.6438 0.8907 32 1 3.8364 3.1227 -0.8904 33 1 3.8359 3.1237 0.8896 34 1 4.5532 4.8786 -0.0106 35 1 5.8439 6.9742 0.0011 36 1 8.3045 6.9064 0.0002 37 1 10.2925 5.6137 0.5126 38 1 10.2476 3.8343 0.5125 39 1 10.0389 5.5116 -1.9023 40 1 12.2622 5.5648 -0.9230 41 1 12.2180 3.7854 -0.9229 42 1 11.9338 3.7914 -3.3857 43 1 11.9780 5.5708 -3.3867 44 1 16.2712 4.5745 -5.0253 45 1 8.1959 2.6435 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273017201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -94.182469 kcal Electronic energy + Delta-G solvation = -21882.592203 eV Core-core repulsion = 18478.040706 eV Total energy + Delta-G solvation = -3404.551497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16290 -39.22697 -38.71439 -37.24825 -35.04552 -34.07443 -33.05245 -31.29090 -30.57747 -28.11539 -27.16511 -26.04784 -24.80179 -23.54228 -22.81678 -22.32012 -21.60531 -18.96497 -18.79848 -17.59535 -17.57323 -17.11964 -16.80580 -16.55006 -16.51082 -16.27043 -15.84540 -15.52290 -15.19828 -14.87991 -14.56651 -14.53326 -14.41978 -13.96181 -13.62461 -13.31549 -13.06272 -12.87924 -12.84811 -12.63879 -12.51103 -12.43601 -12.09465 -11.91696 -11.84614 -11.75294 -11.63012 -11.51109 -11.42847 -10.76872 -10.65813 -9.83699 -9.35454 -9.12192 -8.30065 -6.34570 0.34406 0.51099 1.36182 1.39256 1.52414 2.00906 2.36853 2.75305 2.98809 3.05472 3.47632 3.82288 3.83996 3.88693 4.02089 4.12261 4.14771 4.25990 4.32906 4.35141 4.40514 4.44780 4.47506 4.50108 4.54606 4.55722 4.57291 4.71864 4.85151 4.86234 4.95663 4.99795 5.07164 5.10286 5.27651 5.35277 5.47370 5.49592 5.62959 5.67386 5.83319 6.10106 6.18879 6.24860 6.48362 6.50376 6.73750 7.30349 8.86460 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002155 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.350078 B =12988.132147 C =13814.728311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.066 3.934 4 C -0.117 4.117 5 C 0.061 3.939 6 O -0.334 6.334 7 C 0.116 3.884 8 C -0.209 4.209 9 C -0.078 4.078 10 C -0.158 4.158 11 C -0.047 4.047 12 C 0.098 3.902 13 N -0.691 5.691 14 C 0.086 3.914 15 C -0.005 4.005 16 C -0.534 4.534 17 H 0.033 0.967 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.250 1.250 24 C -0.152 4.152 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.134 0.866 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.343 0.657 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.267 0.733 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.901 -0.534 10.688 36.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.010 4.010 4 C -0.155 4.155 5 C -0.014 4.014 6 O -0.249 6.249 7 C 0.071 3.929 8 C -0.227 4.227 9 C -0.096 4.096 10 C -0.176 4.176 11 C -0.048 4.048 12 C -0.031 4.031 13 N -0.322 5.322 14 C -0.042 4.042 15 C -0.043 4.043 16 C -0.573 4.573 17 H 0.052 0.948 18 C -0.191 4.191 19 N -0.590 5.590 20 Si 0.777 3.223 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.174 1.174 24 C -0.171 4.171 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.152 0.848 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -34.644 -1.598 10.524 36.242 hybrid contribution 0.442 0.956 -0.417 1.133 sum -34.202 -0.642 10.106 35.670 Atomic orbital electron populations 1.22939 0.79104 1.03866 1.01123 1.87831 1.21779 1.28772 1.95689 1.22371 0.91899 0.84735 1.01992 1.21330 0.94092 0.95978 1.04116 1.22765 0.77284 0.98215 1.03095 1.86022 1.20696 1.29283 1.88877 1.19060 0.91213 0.85524 0.97083 1.21507 1.01440 0.91421 1.08365 1.21240 0.93443 0.98729 0.96216 1.21219 0.95304 0.97279 1.03823 1.19594 0.94714 0.92847 0.97599 1.20891 0.90452 1.01739 0.89975 1.60534 1.08908 1.49597 1.13150 1.21658 0.85898 0.99299 0.97390 1.19439 0.93667 0.96766 0.94395 1.21410 0.91975 1.50688 0.93223 0.94844 1.25992 0.95805 0.93984 1.03335 1.70067 1.09231 1.52470 1.27249 0.85611 0.79450 0.79215 0.78072 1.18897 1.20934 1.17412 1.20356 0.91301 0.98956 1.06490 0.92945 0.88813 0.92794 0.91320 0.91563 0.91165 0.90837 0.90420 0.90017 0.83016 0.82835 0.84765 0.93256 0.90598 0.83885 0.95919 0.92508 0.96125 0.96219 0.92432 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.45 10.70 -148.98 -1.59 -8.05 16 3 C 0.07 0.71 5.94 71.98 0.43 1.14 16 4 C -0.12 -1.65 5.95 30.59 0.18 -1.46 16 5 C 0.06 0.84 4.74 71.98 0.34 1.18 16 6 O -0.33 -7.51 10.14 -92.47 -0.94 -8.45 16 7 C 0.12 2.71 6.69 22.51 0.15 2.86 16 8 C -0.21 -3.73 9.04 22.37 0.20 -3.52 16 9 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 10 C -0.16 -3.30 9.70 22.28 0.22 -3.08 16 11 C -0.05 -1.19 5.39 -19.88 -0.11 -1.30 16 12 C 0.10 2.72 5.81 85.56 0.50 3.22 16 13 N -0.69 -23.23 6.49 -517.93 -3.36 -26.60 16 14 C 0.09 3.51 5.62 86.30 0.49 4.00 16 15 C 0.00 -0.24 4.30 29.85 0.13 -0.11 16 16 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 17 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 18 C 0.01 0.35 5.47 84.66 0.46 0.81 16 19 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 20 Si 0.95 45.44 27.47 68.60 1.88 47.32 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 24 C -0.15 -4.05 9.64 22.37 0.22 -3.83 16 25 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.31 8.14 -2.39 -0.02 0.30 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 0.84 7.65 -2.39 -0.02 0.83 16 33 H 0.08 0.81 7.67 -2.39 -0.02 0.79 16 34 H 0.15 1.75 6.30 -2.91 -0.02 1.73 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 38 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 39 H 0.34 10.76 8.72 -89.69 -0.78 9.98 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 43 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 44 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 45 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -71.98 373.55 1.33 -70.66 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.11 Total: 16.39 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 4.92 Total: -31.13 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -3.06 Total: -86.75 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -2.53 Total: -16.49 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -71.98 1.33 -70.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273017201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.527 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds