Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47467 * 2 1 4 4 C 1.35995 * 117.00064 * 180.02562 * 3 2 1 5 5 C 1.38558 * 120.07405 * 0.02562 * 4 3 2 6 6 C 1.38247 * 119.99917 * 179.97438 * 5 4 3 7 7 C 1.38245 * 120.14478 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.92641 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47370 * 89.99479 * 8 7 6 10 10 C 1.46900 * 111.00044 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47203 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47408 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99557 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00463 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00481 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99756 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47133 * 89.99570 * 16 14 12 18 18 H 1.48502 * 109.46992 * 209.99769 * 16 14 12 19 19 H 1.48496 * 109.47104 * 329.99992 * 16 14 12 20 20 C 1.38238 * 120.15318 * 0.04167 * 7 6 5 21 21 C 1.38572 * 119.99411 * 359.95911 * 20 7 6 22 22 O 1.35994 * 120.07206 * 180.29924 * 21 20 7 23 23 C 1.42907 * 117.00165 * 359.72133 * 22 21 20 24 24 C 1.52990 * 109.47331 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47066 * 59.99867 * 1 2 3 26 26 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46886 * 300.00063 * 1 2 3 28 28 H 1.08999 * 109.47035 * 239.99662 * 2 1 3 29 29 H 1.09005 * 109.46912 * 119.99850 * 2 1 3 30 30 H 1.07996 * 120.00036 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.92731 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47136 * 210.00211 * 8 7 6 33 33 H 1.09008 * 109.46609 * 329.99346 * 8 7 6 34 34 H 1.00895 * 110.99824 * 56.04638 * 9 8 7 35 35 H 1.09010 * 109.46646 * 299.99832 * 10 9 8 36 36 H 1.08994 * 109.47319 * 59.99506 * 10 9 8 37 37 H 1.09000 * 109.47260 * 300.00015 * 11 10 9 38 38 H 1.09007 * 109.47158 * 59.99733 * 11 10 9 39 39 H 0.97005 * 120.00356 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.00548 * 179.97438 * 20 7 6 41 41 H 1.08998 * 109.46932 * 300.00387 * 23 22 21 42 42 H 1.09002 * 109.46940 * 59.99906 * 23 22 21 43 43 H 1.08999 * 109.47478 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47334 * 300.00026 * 24 23 22 45 45 H 1.09002 * 109.47280 * 59.99999 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 -0.0005 5 6 4.2000 0.4275 -0.0016 6 6 5.5703 0.6104 -0.0027 7 6 6.1004 1.8872 -0.0033 8 6 7.5949 2.0808 -0.0050 9 7 8.0790 2.1437 -1.3906 10 6 9.5353 2.3318 -1.4314 11 6 10.0010 2.3930 -2.8875 12 6 11.4949 2.5865 -2.9294 13 1 12.0561 2.6583 -2.0094 14 6 12.1454 2.6710 -4.1421 15 7 13.4490 2.8404 -4.1787 16 14 11.1747 2.5461 -5.7333 17 1 10.7381 3.9016 -6.1544 18 1 12.0315 1.9513 -6.7904 19 1 9.9830 1.6863 -5.5200 20 6 5.2626 2.9868 -0.0019 21 6 3.8881 2.8105 -0.0008 22 8 3.0625 3.8911 -0.0055 23 6 3.6804 5.1797 -0.0054 24 6 2.6003 6.2632 -0.0105 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.7885 -0.5709 -0.0016 31 1 6.2282 -0.2461 -0.0031 32 1 7.8415 3.0101 0.5086 33 1 8.0701 1.2449 0.5084 34 1 7.6056 2.8703 -1.9063 35 1 9.7956 3.2628 -0.9276 36 1 10.0237 1.4975 -0.9281 37 1 9.7405 1.4623 -3.3916 38 1 9.5125 3.2276 -3.3904 39 1 13.9067 2.8994 -5.0320 40 1 5.6792 3.9832 -0.0019 41 1 4.2976 5.2866 0.8866 42 1 4.3040 5.2837 -0.8933 43 1 3.0715 7.2461 -0.0108 44 1 1.9827 6.1565 -0.9023 45 1 1.9769 6.1591 0.8776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273023645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -64.638670 kcal Electronic energy + Delta-G solvation = -22832.727661 eV Core-core repulsion = 19429.457279 eV Total energy + Delta-G solvation = -3403.270382 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69125 -38.74986 -37.69918 -35.67668 -33.08525 -32.34442 -31.71980 -30.97964 -29.89989 -28.73249 -25.58343 -24.48744 -23.36014 -23.11101 -21.69300 -20.97306 -20.36249 -18.66007 -17.34379 -16.76750 -16.53176 -16.50517 -15.97120 -15.29624 -14.87962 -14.56769 -14.40489 -14.11556 -13.88562 -13.56776 -13.41981 -13.11413 -12.87369 -12.84128 -12.75103 -12.49565 -12.29576 -11.98550 -11.85291 -11.73162 -11.34437 -11.13442 -11.08047 -10.97147 -10.90946 -10.83425 -10.07799 -9.87170 -9.75983 -9.23247 -8.79316 -8.53474 -7.98580 -7.79135 -6.04268 -4.02720 1.20060 1.38054 3.02190 3.04958 3.32615 3.40205 3.46759 3.61796 4.46794 4.57335 4.63097 4.64815 4.71382 4.77055 4.83199 4.92388 4.94614 4.99443 5.02101 5.16882 5.25966 5.30344 5.31203 5.45550 5.49667 5.51033 5.55995 5.65450 5.73216 5.80010 5.84619 6.06557 6.16566 6.22508 6.24680 6.59620 6.62674 6.76314 6.96480 7.11766 7.37222 7.49295 7.59578 7.74163 7.89312 8.53040 8.99633 9.58195 11.08988 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.002878 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.973623 B = 9727.097754 C =10367.496899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.308 6.308 4 C 0.095 3.905 5 C -0.173 4.173 6 C -0.094 4.094 7 C -0.071 4.071 8 C 0.099 3.901 9 N -0.689 5.689 10 C 0.073 3.927 11 C -0.010 4.010 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.263 1.263 20 C -0.167 4.167 21 C 0.100 3.900 22 O -0.307 6.307 23 C 0.052 3.948 24 C -0.150 4.150 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.336 0.664 35 H 0.022 0.978 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.008 0.992 39 H 0.263 0.737 40 H 0.132 0.868 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.187 -1.289 11.175 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.222 6.222 4 C 0.050 3.950 5 C -0.192 4.192 6 C -0.113 4.113 7 C -0.071 4.071 8 C -0.030 4.030 9 N -0.319 5.319 10 C -0.055 4.055 11 C -0.048 4.048 12 C -0.560 4.560 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.187 1.187 20 C -0.186 4.186 21 C 0.054 3.946 22 O -0.222 6.222 23 C -0.023 4.023 24 C -0.207 4.207 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.150 0.850 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.346 -1.799 10.991 28.603 hybrid contribution 0.118 0.773 -0.668 1.028 sum -26.228 -1.026 10.323 28.205 Atomic orbital electron populations 1.21754 0.92871 1.02647 1.03504 1.22760 0.95817 0.82372 1.01261 1.86146 1.18294 1.28579 1.89197 1.18170 0.82935 0.91142 1.02790 1.21046 0.94030 0.97243 1.06886 1.20769 0.93866 0.97045 0.99624 1.19610 0.95485 0.92435 0.99611 1.20847 0.89797 1.00802 0.91589 1.60646 1.06977 1.53232 1.11093 1.21988 0.84449 0.98959 1.00102 1.19547 0.96712 0.96833 0.91670 1.21068 0.90524 1.49991 0.94397 0.91099 1.25006 0.94762 0.94471 0.99192 1.69913 1.07979 1.50392 1.26010 0.86753 0.80499 0.78727 0.83204 1.20402 1.21420 1.18723 1.20975 0.90946 0.99955 1.06733 1.18123 0.88835 0.85168 1.02443 1.86144 1.34128 1.12759 1.89147 1.22783 0.96708 0.81378 1.01430 1.21749 0.98902 0.96640 1.03422 0.91538 0.90495 0.91610 0.92107 0.92216 0.84967 0.85274 0.94834 0.90198 0.84717 0.95974 0.91584 0.95611 0.97332 0.92724 0.85041 0.92176 0.91962 0.90412 0.91548 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.85 9.92 -34.23 -0.34 -4.19 16 4 C 0.10 1.25 6.70 -39.12 -0.26 0.98 16 5 C -0.17 -2.01 9.04 -39.46 -0.36 -2.37 16 6 C -0.09 -1.17 9.69 -39.58 -0.38 -1.55 16 7 C -0.07 -0.93 5.39 -104.62 -0.56 -1.50 16 8 C 0.10 1.38 5.81 -4.97 -0.03 1.35 16 9 N -0.69 -11.72 6.49 -115.05 -0.75 -12.47 16 10 C 0.07 1.47 5.62 -3.83 -0.02 1.45 16 11 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 12 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 13 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 16 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 19 H -0.26 -6.39 6.54 56.52 0.37 -6.03 16 20 C -0.17 -2.12 8.69 -39.46 -0.34 -2.46 16 21 C 0.10 1.34 6.70 -39.12 -0.26 1.08 16 22 O -0.31 -4.01 9.92 -34.22 -0.34 -4.35 16 23 C 0.05 0.50 5.46 37.15 0.20 0.71 16 24 C -0.15 -1.14 10.28 37.15 0.38 -0.76 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.08 1.09 8.08 -51.92 -0.42 0.67 16 34 H 0.34 5.53 8.72 -39.29 -0.34 5.18 16 35 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 38 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.13 1.47 6.30 -52.49 -0.33 1.14 16 41 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 42 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -32.87 369.48 -8.95 -41.81 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.59 Total: 0.40 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.60 Total: -16.84 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.03 Total: -39.78 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.68 Total: -8.54 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.87 -8.95 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273023645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.824 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds