Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47467 * 2 1 4 4 C 1.35995 * 117.00064 * 180.02562 * 3 2 1 5 5 C 1.38558 * 120.07405 * 0.02562 * 4 3 2 6 6 C 1.38247 * 119.99917 * 179.97438 * 5 4 3 7 7 C 1.38245 * 120.14478 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.92641 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47370 * 89.99479 * 8 7 6 10 10 C 1.46900 * 111.00044 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47203 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47408 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99557 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00463 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00481 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99756 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47133 * 89.99570 * 16 14 12 18 18 H 1.48502 * 109.46992 * 209.99769 * 16 14 12 19 19 H 1.48496 * 109.47104 * 329.99992 * 16 14 12 20 20 C 1.38238 * 120.15318 * 0.04167 * 7 6 5 21 21 C 1.38572 * 119.99411 * 359.95911 * 20 7 6 22 22 O 1.35994 * 120.07206 * 180.29924 * 21 20 7 23 23 C 1.42907 * 117.00165 * 359.72133 * 22 21 20 24 24 C 1.52990 * 109.47331 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47066 * 59.99867 * 1 2 3 26 26 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46886 * 300.00063 * 1 2 3 28 28 H 1.08999 * 109.47035 * 239.99662 * 2 1 3 29 29 H 1.09005 * 109.46912 * 119.99850 * 2 1 3 30 30 H 1.07996 * 120.00036 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.92731 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47136 * 210.00211 * 8 7 6 33 33 H 1.09008 * 109.46609 * 329.99346 * 8 7 6 34 34 H 1.00895 * 110.99824 * 56.04638 * 9 8 7 35 35 H 1.09010 * 109.46646 * 299.99832 * 10 9 8 36 36 H 1.08994 * 109.47319 * 59.99506 * 10 9 8 37 37 H 1.09000 * 109.47260 * 300.00015 * 11 10 9 38 38 H 1.09007 * 109.47158 * 59.99733 * 11 10 9 39 39 H 0.97005 * 120.00356 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.00548 * 179.97438 * 20 7 6 41 41 H 1.08998 * 109.46932 * 300.00387 * 23 22 21 42 42 H 1.09002 * 109.46940 * 59.99906 * 23 22 21 43 43 H 1.08999 * 109.47478 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47334 * 300.00026 * 24 23 22 45 45 H 1.09002 * 109.47280 * 59.99999 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 -0.0005 5 6 4.2000 0.4275 -0.0016 6 6 5.5703 0.6104 -0.0027 7 6 6.1004 1.8872 -0.0033 8 6 7.5949 2.0808 -0.0050 9 7 8.0790 2.1437 -1.3906 10 6 9.5353 2.3318 -1.4314 11 6 10.0010 2.3930 -2.8875 12 6 11.4949 2.5865 -2.9294 13 1 12.0561 2.6583 -2.0094 14 6 12.1454 2.6710 -4.1421 15 7 13.4490 2.8404 -4.1787 16 14 11.1747 2.5461 -5.7333 17 1 10.7381 3.9016 -6.1544 18 1 12.0315 1.9513 -6.7904 19 1 9.9830 1.6863 -5.5200 20 6 5.2626 2.9868 -0.0019 21 6 3.8881 2.8105 -0.0008 22 8 3.0625 3.8911 -0.0055 23 6 3.6804 5.1797 -0.0054 24 6 2.6003 6.2632 -0.0105 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.7885 -0.5709 -0.0016 31 1 6.2282 -0.2461 -0.0031 32 1 7.8415 3.0101 0.5086 33 1 8.0701 1.2449 0.5084 34 1 7.6056 2.8703 -1.9063 35 1 9.7956 3.2628 -0.9276 36 1 10.0237 1.4975 -0.9281 37 1 9.7405 1.4623 -3.3916 38 1 9.5125 3.2276 -3.3904 39 1 13.9067 2.8994 -5.0320 40 1 5.6792 3.9832 -0.0019 41 1 4.2976 5.2866 0.8866 42 1 4.3040 5.2837 -0.8933 43 1 3.0715 7.2461 -0.0108 44 1 1.9827 6.1565 -0.9023 45 1 1.9769 6.1591 0.8776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273023645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -85.269681 kcal Electronic energy + Delta-G solvation = -22833.622289 eV Core-core repulsion = 19429.457279 eV Total energy + Delta-G solvation = -3404.165010 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58844 -39.59602 -38.72455 -37.04691 -34.98940 -33.33182 -32.50698 -32.20820 -31.02394 -29.98613 -26.93863 -25.50544 -24.54932 -24.00796 -22.64650 -22.23406 -21.78889 -19.54215 -18.95370 -18.24061 -17.44597 -17.32411 -16.70214 -16.68437 -16.29947 -15.77345 -15.67344 -15.31837 -14.98958 -14.73141 -14.49435 -14.44751 -14.18774 -13.62208 -13.56356 -13.41940 -13.33611 -13.08760 -12.93830 -12.76777 -12.68050 -12.54077 -12.08391 -11.94724 -11.87476 -11.76726 -11.68706 -11.61034 -11.49562 -11.41680 -10.76939 -9.73392 -9.32568 -8.75833 -8.29923 -6.34331 0.26569 0.41765 1.36481 1.39118 1.52233 2.23804 2.25443 2.36758 2.64640 3.05716 3.45329 3.76933 3.81851 4.01704 4.03644 4.07876 4.08072 4.15595 4.27847 4.33467 4.38193 4.41432 4.44920 4.49559 4.57809 4.66539 4.75378 4.86405 4.90203 4.92548 4.95375 4.96500 5.08835 5.20819 5.22729 5.28926 5.30395 5.48729 5.62922 5.64291 5.70529 6.11262 6.14188 6.25067 6.49059 6.62874 6.74214 7.30681 8.86616 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.002878 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.973623 B = 9727.097754 C =10367.496899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.083 3.917 5 C -0.170 4.170 6 C -0.099 4.099 7 C -0.082 4.082 8 C 0.103 3.897 9 N -0.689 5.689 10 C 0.087 3.913 11 C -0.005 4.005 12 C -0.533 4.533 13 H 0.034 0.966 14 C 0.005 3.995 15 N -0.950 5.950 16 Si 0.952 3.048 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.249 1.249 20 C -0.167 4.167 21 C 0.082 3.918 22 O -0.325 6.325 23 C 0.044 3.956 24 C -0.146 4.146 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.157 0.843 31 H 0.140 0.860 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.340 0.660 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.017 0.983 39 H 0.267 0.733 40 H 0.142 0.858 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.331 -1.777 10.788 30.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.038 3.962 5 C -0.188 4.188 6 C -0.118 4.118 7 C -0.083 4.083 8 C -0.025 4.025 9 N -0.320 5.320 10 C -0.042 4.042 11 C -0.043 4.043 12 C -0.571 4.571 13 H 0.052 0.948 14 C -0.192 4.192 15 N -0.591 5.591 16 Si 0.776 3.224 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.172 1.172 20 C -0.186 4.186 21 C 0.037 3.963 22 O -0.240 6.240 23 C -0.031 4.031 24 C -0.203 4.203 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.175 0.825 31 H 0.157 0.843 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.160 0.840 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.515 -2.286 10.625 30.515 hybrid contribution 0.762 0.918 -0.451 1.276 sum -27.752 -1.368 10.174 29.590 Atomic orbital electron populations 1.21787 0.91607 1.04108 1.02974 1.23076 0.96893 0.80921 1.02260 1.86133 1.18035 1.30997 1.89124 1.18456 0.83550 0.91536 1.02678 1.21279 0.93581 0.98078 1.05884 1.20972 0.94457 0.97119 0.99271 1.19558 0.94793 0.93038 1.00910 1.20838 0.90470 1.01423 0.89814 1.60550 1.04862 1.53386 1.13220 1.21655 0.86580 0.98683 0.97296 1.19437 0.93670 0.96677 0.94469 1.21411 0.92962 1.49575 0.93186 0.94793 1.25987 0.95770 0.94071 1.03330 1.70060 1.09963 1.51840 1.27234 0.85622 0.79213 0.79447 0.78131 1.19127 1.20967 1.17238 1.21071 0.90764 1.00417 1.06365 1.18378 0.89236 0.85706 1.03022 1.86128 1.34985 1.13705 1.89218 1.23032 0.97559 0.80570 1.01913 1.21773 0.98470 0.96942 1.03156 0.92212 0.88010 0.91990 0.91282 0.90907 0.82536 0.84253 0.94029 0.89757 0.84222 0.96198 0.92161 0.95960 0.96493 0.92440 0.84010 0.91343 0.91758 0.88299 0.91994 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.04 0.65 5.46 71.98 0.39 1.05 16 3 O -0.33 -7.91 9.92 -79.63 -0.79 -8.70 16 4 C 0.08 2.10 6.70 22.57 0.15 2.25 16 5 C -0.17 -3.64 9.04 22.35 0.20 -3.43 16 6 C -0.10 -2.29 9.69 22.27 0.22 -2.07 16 7 C -0.08 -2.04 5.39 -19.86 -0.11 -2.15 16 8 C 0.10 2.72 5.81 85.56 0.50 3.22 16 9 N -0.69 -22.30 6.49 -517.92 -3.36 -25.66 16 10 C 0.09 3.41 5.62 86.30 0.49 3.90 16 11 C 0.00 -0.22 4.30 29.85 0.13 -0.10 16 12 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 13 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 14 C 0.01 0.31 5.47 84.65 0.46 0.78 16 15 N -0.95 -60.02 13.96 21.44 0.30 -59.72 16 16 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 20 C -0.17 -4.05 8.69 22.35 0.19 -3.85 16 21 C 0.08 2.15 6.70 22.57 0.15 2.30 16 22 O -0.33 -8.35 9.92 -79.62 -0.79 -9.14 16 23 C 0.04 0.81 5.46 71.98 0.39 1.20 16 24 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 29 H 0.07 0.90 7.67 -2.38 -0.02 0.89 16 30 H 0.16 2.44 6.30 -2.91 -0.02 2.42 16 31 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.04 1.04 8.08 -2.39 -0.02 1.02 16 33 H 0.08 2.15 8.08 -2.38 -0.02 2.13 16 34 H 0.34 10.55 8.72 -89.70 -0.78 9.76 16 35 H 0.02 0.78 8.14 -2.38 -0.02 0.77 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 38 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 39 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 40 H 0.14 2.99 6.30 -2.91 -0.02 2.98 16 41 H 0.07 1.11 7.67 -2.39 -0.02 1.09 16 42 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -70.78 369.48 2.26 -68.52 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.13 Total: 17.84 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 4.89 Total: -29.97 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.06 Total: -85.38 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.58 Total: -17.84 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -70.78 2.26 -68.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273023645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.753 kcal (2) G-P(sol) polarization free energy of solvation -70.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds