Wall clock time and date at job start Tue Mar 31 2020 06:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.38160 * 120.02703 * 359.72415 * 5 4 3 7 7 C 1.38246 * 120.05577 * 179.76971 * 6 5 4 8 8 C 1.50697 * 119.94926 * 180.25386 * 7 6 5 9 9 N 1.46897 * 109.47261 * 270.25871 * 8 7 6 10 10 C 1.46904 * 111.00205 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47206 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47016 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00149 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00207 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99897 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00411 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46867 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46960 * 119.99931 * 16 14 12 19 19 H 1.48498 * 109.47201 * 240.00250 * 16 14 12 20 20 C 1.38292 * 120.11095 * 0.50972 * 7 6 5 21 21 C 1.38129 * 120.05342 * 359.74522 * 20 7 6 22 22 C 1.38708 * 120.02824 * 180.02562 * 5 4 3 23 23 O 1.35907 * 120.05511 * 359.97438 * 22 5 4 24 24 C 1.42903 * 116.99639 * 180.02562 * 23 22 5 25 25 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 27 27 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 28 28 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 29 29 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 31 31 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 32 32 H 1.08001 * 119.97611 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.46781 * 30.25423 * 8 7 6 34 34 H 1.08997 * 109.47316 * 150.25137 * 8 7 6 35 35 H 1.00894 * 111.00374 * 56.03701 * 9 8 7 36 36 H 1.08997 * 109.46621 * 299.99524 * 10 9 8 37 37 H 1.08996 * 109.46948 * 59.99496 * 10 9 8 38 38 H 1.08995 * 109.46702 * 299.99632 * 11 10 9 39 39 H 1.09001 * 109.46866 * 59.99471 * 11 10 9 40 40 H 0.96991 * 120.00515 * 180.02562 * 15 14 12 41 41 H 1.07994 * 119.97219 * 179.72129 * 20 7 6 42 42 H 1.07994 * 120.02906 * 179.97438 * 21 20 7 43 43 H 1.08999 * 109.46543 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47325 * 299.99896 * 24 23 22 45 45 H 1.09000 * 109.46981 * 60.00639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 6 2.8420 3.8926 -0.0047 7 6 3.1977 5.2285 0.0007 8 6 2.1296 6.2915 0.0000 9 7 1.7830 6.6367 -1.3851 10 6 0.7417 7.6722 -1.4249 11 6 0.4087 8.0049 -2.8807 12 6 -0.6600 9.0666 -2.9215 13 1 -1.0612 9.4647 -2.0011 14 6 -1.1248 9.5307 -4.1337 15 7 -0.6359 9.0465 -5.2545 16 14 -2.4489 10.8473 -4.1844 17 1 -2.8274 11.2223 -2.7981 18 1 -1.9309 12.0433 -4.8962 19 1 -3.6407 10.3236 -4.8989 20 6 4.5323 5.5911 0.0012 21 6 5.5133 4.6187 0.0018 22 6 5.1587 3.2772 0.0013 23 8 6.1221 2.3186 0.0013 24 6 7.4800 2.7636 0.0020 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 0.8908 31 1 3.8340 0.9765 -0.8892 32 1 1.7990 3.6121 -0.0093 33 1 1.2440 5.9170 0.5135 34 1 2.4995 7.1787 0.5140 35 1 1.4984 5.8180 -1.9014 36 1 -0.1533 7.3068 -0.9215 37 1 1.1017 8.5690 -0.9207 38 1 1.3039 8.3704 -3.3837 39 1 0.0490 7.1081 -3.3852 40 1 -0.9625 9.3732 -6.1073 41 1 4.8076 6.6353 0.0008 42 1 6.5553 4.9022 0.0018 43 1 8.1452 1.9001 0.0025 44 1 7.6657 3.3653 -0.8877 45 1 7.6649 3.3647 0.8923 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273060599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:36 Heat of formation + Delta-G solvation = -73.574265 kcal Electronic energy + Delta-G solvation = -22747.360099 eV Core-core repulsion = 19343.702240 eV Total energy + Delta-G solvation = -3403.657859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40599 -38.28133 -37.71650 -35.59966 -33.13317 -32.57088 -31.02049 -30.68336 -28.82948 -27.56975 -26.13580 -25.00337 -23.24005 -22.94962 -21.80466 -20.72009 -20.28538 -18.12315 -17.04024 -16.40811 -16.27636 -16.02939 -15.82690 -15.61184 -14.84216 -14.45820 -14.28892 -14.16058 -14.01257 -13.81823 -13.75036 -12.85281 -12.62045 -12.53632 -12.41741 -12.23973 -12.10385 -11.89159 -11.62582 -11.44735 -11.11013 -11.04687 -11.01522 -10.89393 -10.71816 -10.47990 -9.95046 -9.89017 -9.35876 -9.10514 -8.78884 -8.32002 -8.08890 -7.71490 -5.96091 -3.98532 1.34870 1.41150 3.11096 3.33644 3.40769 3.44051 3.45006 3.70751 4.47923 4.66313 4.78507 4.84239 4.86630 4.92340 4.93125 5.00005 5.15212 5.18217 5.20035 5.23606 5.28231 5.34837 5.39784 5.43025 5.54333 5.67019 5.72027 5.75185 5.93805 5.95962 6.09008 6.28190 6.31303 6.40505 6.45392 6.73704 6.79827 7.03041 7.08395 7.26229 7.53451 7.78483 7.87486 8.01564 8.13549 8.47858 9.09144 9.65036 11.15404 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002936 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.592898 B = 9535.254439 C =10932.324659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.385 6.385 4 C 0.119 3.881 5 C -0.124 4.124 6 C -0.053 4.053 7 C -0.108 4.108 8 C 0.100 3.900 9 N -0.687 5.687 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.058 4.058 21 C -0.207 4.207 22 C 0.124 3.876 23 O -0.321 6.321 24 C 0.028 3.972 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.137 0.863 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.338 0.662 36 H 0.016 0.984 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.103 -18.270 13.472 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.305 6.305 4 C 0.043 3.957 5 C -0.124 4.124 6 C -0.072 4.072 7 C -0.109 4.109 8 C -0.029 4.029 9 N -0.318 5.318 10 C -0.063 4.063 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.077 4.077 21 C -0.226 4.226 22 C 0.079 3.921 23 O -0.234 6.234 24 C -0.067 4.067 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.452 -17.840 13.221 25.962 hybrid contribution -1.039 0.222 0.062 1.064 sum 12.414 -17.618 13.282 25.316 Atomic orbital electron populations 1.21750 0.93603 1.02184 1.03460 1.22439 0.95694 0.83658 0.99957 1.87864 1.20724 1.26416 1.95478 1.20898 0.81116 0.93103 1.00578 1.18871 0.89987 0.95115 1.08472 1.20761 0.99533 0.90987 0.95873 1.19871 0.94686 0.94029 1.02300 1.20819 0.94625 0.95691 0.91799 1.60661 1.45843 1.14450 1.10805 1.22180 0.89934 0.92793 1.01370 1.19072 0.96640 0.96406 0.89139 1.21224 1.20956 1.21443 0.92268 0.92702 1.25010 0.96856 0.96827 0.95743 1.69985 1.42942 1.43046 0.97282 0.86536 0.81709 0.81709 0.78033 1.19769 1.21005 1.21046 1.20871 0.91812 0.99216 0.95771 1.21118 1.00248 0.91607 1.09620 1.18632 0.87673 0.87672 0.98147 1.86017 1.15140 1.33269 1.89007 1.23028 0.80379 1.01782 1.01486 0.91185 0.91801 0.91554 0.93374 0.93531 0.92319 0.92157 0.84565 0.94956 0.90697 0.84491 0.96609 0.92349 0.95660 0.96784 0.93074 0.85496 0.85473 0.88458 0.92535 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -4.68 8.82 -35.23 -0.31 -4.99 16 4 C 0.12 1.38 5.80 36.01 0.21 1.58 16 5 C -0.12 -1.64 5.89 -104.48 -0.62 -2.25 16 6 C -0.05 -0.75 9.03 -39.61 -0.36 -1.10 16 7 C -0.11 -1.55 5.39 -104.60 -0.56 -2.12 16 8 C 0.10 1.54 5.81 -4.98 -0.03 1.51 16 9 N -0.69 -12.91 6.49 -115.06 -0.75 -13.66 16 10 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 11 C 0.02 0.67 5.23 -27.88 -0.15 0.52 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.06 -0.77 9.69 -39.60 -0.38 -1.15 16 21 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 22 C 0.12 1.54 6.66 -39.22 -0.26 1.28 16 23 O -0.32 -3.50 9.92 -19.45 -0.19 -3.69 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.14 1.93 7.01 -52.49 -0.37 1.57 16 33 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.34 6.34 8.72 -39.29 -0.34 5.99 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 45 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -32.30 374.21 -8.93 -41.22 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.71 Total: 1.03 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.32 Total: -15.86 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: -0.01 Total: -40.31 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.50 Total: -8.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.30 -8.93 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273060599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.352 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds