Wall clock time and date at job start Tue Mar 31 2020 06:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.38160 * 120.02703 * 359.72415 * 5 4 3 7 7 C 1.38246 * 120.05577 * 179.76971 * 6 5 4 8 8 C 1.50697 * 119.94926 * 180.25386 * 7 6 5 9 9 N 1.46897 * 109.47261 * 270.25871 * 8 7 6 10 10 C 1.46904 * 111.00205 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47206 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47016 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00149 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00207 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99897 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00411 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46867 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46960 * 119.99931 * 16 14 12 19 19 H 1.48498 * 109.47201 * 240.00250 * 16 14 12 20 20 C 1.38292 * 120.11095 * 0.50972 * 7 6 5 21 21 C 1.38129 * 120.05342 * 359.74522 * 20 7 6 22 22 C 1.38708 * 120.02824 * 180.02562 * 5 4 3 23 23 O 1.35907 * 120.05511 * 359.97438 * 22 5 4 24 24 C 1.42903 * 116.99639 * 180.02562 * 23 22 5 25 25 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 27 27 H 1.09000 * 109.46950 * 59.99785 * 1 2 3 28 28 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 29 29 H 1.08999 * 109.47384 * 119.99902 * 2 1 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 31 31 H 1.09001 * 109.47074 * 60.00315 * 4 3 2 32 32 H 1.08001 * 119.97611 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.46781 * 30.25423 * 8 7 6 34 34 H 1.08997 * 109.47316 * 150.25137 * 8 7 6 35 35 H 1.00894 * 111.00374 * 56.03701 * 9 8 7 36 36 H 1.08997 * 109.46621 * 299.99524 * 10 9 8 37 37 H 1.08996 * 109.46948 * 59.99496 * 10 9 8 38 38 H 1.08995 * 109.46702 * 299.99632 * 11 10 9 39 39 H 1.09001 * 109.46866 * 59.99471 * 11 10 9 40 40 H 0.96991 * 120.00515 * 180.02562 * 15 14 12 41 41 H 1.07994 * 119.97219 * 179.72129 * 20 7 6 42 42 H 1.07994 * 120.02906 * 179.97438 * 21 20 7 43 43 H 1.08999 * 109.46543 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47325 * 299.99896 * 24 23 22 45 45 H 1.09000 * 109.46981 * 60.00639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 6 2.8420 3.8926 -0.0047 7 6 3.1977 5.2285 0.0007 8 6 2.1296 6.2915 0.0000 9 7 1.7830 6.6367 -1.3851 10 6 0.7417 7.6722 -1.4249 11 6 0.4087 8.0049 -2.8807 12 6 -0.6600 9.0666 -2.9215 13 1 -1.0612 9.4647 -2.0011 14 6 -1.1248 9.5307 -4.1337 15 7 -0.6359 9.0465 -5.2545 16 14 -2.4489 10.8473 -4.1844 17 1 -2.8274 11.2223 -2.7981 18 1 -1.9309 12.0433 -4.8962 19 1 -3.6407 10.3236 -4.8989 20 6 4.5323 5.5911 0.0012 21 6 5.5133 4.6187 0.0018 22 6 5.1587 3.2772 0.0013 23 8 6.1221 2.3186 0.0013 24 6 7.4800 2.7636 0.0020 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 0.8908 31 1 3.8340 0.9765 -0.8892 32 1 1.7990 3.6121 -0.0093 33 1 1.2440 5.9170 0.5135 34 1 2.4995 7.1787 0.5140 35 1 1.4984 5.8180 -1.9014 36 1 -0.1533 7.3068 -0.9215 37 1 1.1017 8.5690 -0.9207 38 1 1.3039 8.3704 -3.3837 39 1 0.0490 7.1081 -3.3852 40 1 -0.9625 9.3732 -6.1073 41 1 4.8076 6.6353 0.0008 42 1 6.5553 4.9022 0.0018 43 1 8.1452 1.9001 0.0025 44 1 7.6657 3.3653 -0.8877 45 1 7.6649 3.3647 0.8923 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273060599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:35 Heat of formation + Delta-G solvation = -93.961347 kcal Electronic energy + Delta-G solvation = -22748.244149 eV Core-core repulsion = 19343.702240 eV Total energy + Delta-G solvation = -3404.541909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31795 -39.12972 -38.71605 -37.10547 -35.06089 -33.61473 -32.41786 -31.51704 -30.40700 -28.35212 -27.16489 -26.54653 -24.80135 -23.73762 -22.74163 -22.45740 -21.52457 -18.98062 -18.50566 -17.93308 -17.20508 -16.94942 -16.88247 -16.55235 -16.40927 -16.02069 -15.52664 -15.25939 -15.23250 -14.71784 -14.67127 -14.38163 -14.18498 -13.59131 -13.45095 -13.31873 -13.19348 -12.97247 -12.86491 -12.71152 -12.51149 -12.35706 -12.31062 -12.00443 -11.95250 -11.87025 -11.66543 -11.39299 -11.22744 -10.69832 -10.56808 -9.77985 -9.32901 -8.99399 -8.19737 -6.31549 0.35098 0.40147 1.40788 1.41476 1.54973 2.35417 2.41001 2.64824 2.67986 3.13487 3.54313 3.76798 3.92073 3.95064 4.15766 4.16727 4.22633 4.36640 4.42809 4.45258 4.47641 4.48970 4.49389 4.53502 4.54510 4.66249 4.73660 4.77264 4.82604 4.83881 5.03362 5.06495 5.09222 5.25707 5.32022 5.34435 5.44914 5.67459 5.69555 5.77962 5.81317 6.13404 6.26974 6.27733 6.41212 6.49681 6.85946 7.37758 8.92749 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002936 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.592898 B = 9535.254439 C =10932.324659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.408 6.408 4 C 0.122 3.878 5 C -0.139 4.139 6 C -0.062 4.062 7 C -0.124 4.124 8 C 0.105 3.895 9 N -0.691 5.691 10 C 0.083 3.917 11 C 0.032 3.968 12 C -0.543 4.543 13 H 0.062 0.938 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.969 3.031 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.066 4.066 21 C -0.205 4.205 22 C 0.125 3.875 23 O -0.329 6.329 24 C 0.018 3.982 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.335 0.665 36 H 0.019 0.981 37 H 0.062 0.938 38 H -0.006 1.006 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.121 0.879 44 H 0.061 0.939 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.754 -18.493 14.595 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.328 6.328 4 C 0.046 3.954 5 C -0.140 4.140 6 C -0.081 4.081 7 C -0.125 4.125 8 C -0.023 4.023 9 N -0.322 5.322 10 C -0.045 4.045 11 C -0.006 4.006 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.084 4.084 21 C -0.224 4.224 22 C 0.080 3.920 23 O -0.243 6.243 24 C -0.076 4.076 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.013 0.987 39 H 0.007 0.993 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.139 0.861 44 H 0.080 0.920 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.121 -18.078 14.366 27.066 hybrid contribution -1.120 0.180 -0.288 1.171 sum 13.001 -17.898 14.078 26.221 Atomic orbital electron populations 1.21775 0.93235 1.03389 1.02469 1.22650 0.96055 0.82618 1.01098 1.87845 1.21050 1.28281 1.95645 1.20898 0.81053 0.92227 1.01182 1.19129 0.90489 0.95853 1.08480 1.20719 0.99467 0.91265 0.96621 1.19777 0.94911 0.93688 1.04097 1.20812 0.95305 0.96586 0.89633 1.60594 1.44437 1.13969 1.13205 1.21813 0.91007 0.93976 0.97752 1.18921 0.94849 0.94866 0.91937 1.21647 1.21616 1.22105 0.92820 0.92014 1.26010 0.99367 0.99304 0.95224 1.70122 1.44506 1.44593 0.98047 0.85343 0.78340 0.78372 0.78629 1.18474 1.20289 1.20325 1.21045 0.91590 1.00092 0.95707 1.21392 1.01352 0.91119 1.08491 1.18739 0.87904 0.88235 0.97171 1.86017 1.16453 1.33245 1.88604 1.23357 0.78631 1.03371 1.02287 0.88888 0.92376 0.92917 0.92531 0.91999 0.91213 0.91812 0.85478 0.94570 0.89888 0.84734 0.96245 0.91930 0.98744 0.99292 0.92742 0.84635 0.82797 0.86082 0.92022 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.05 0.90 6.66 71.98 0.48 1.38 16 3 O -0.41 -9.88 8.82 -148.98 -1.31 -11.20 16 4 C 0.12 2.75 5.80 71.24 0.41 3.17 16 5 C -0.14 -3.62 5.89 -19.77 -0.12 -3.73 16 6 C -0.06 -1.77 9.03 22.25 0.20 -1.57 16 7 C -0.12 -3.54 5.39 -19.85 -0.11 -3.65 16 8 C 0.10 3.24 5.81 85.56 0.50 3.73 16 9 N -0.69 -26.36 6.49 -517.94 -3.36 -29.72 16 10 C 0.08 3.65 5.62 86.30 0.49 4.14 16 11 C 0.03 1.76 5.23 29.85 0.16 1.91 16 12 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 16 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 C -0.07 -1.67 9.69 22.26 0.22 -1.46 16 21 C -0.21 -4.52 9.04 22.37 0.20 -4.32 16 22 C 0.13 2.95 6.66 22.51 0.15 3.10 16 23 O -0.33 -6.53 9.92 -92.51 -0.92 -7.45 16 24 C 0.02 0.20 9.81 113.37 1.11 1.31 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.13 3.75 7.01 -2.91 -0.02 3.73 16 33 H 0.04 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 35 H 0.34 12.99 8.72 -89.70 -0.78 12.21 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 38 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.26 15.35 8.31 -92.72 -0.77 14.58 16 41 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.15 2.46 6.30 -2.91 -0.02 2.44 16 43 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.65 7.66 -2.39 -0.02 0.64 16 45 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 Total: -1.00 -69.80 374.21 2.02 -67.79 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.17 Total: 20.29 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 5.12 Total: -28.87 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -3.08 Total: -87.61 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -2.23 Total: -18.65 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.80 2.02 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273060599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.175 kcal (2) G-P(sol) polarization free energy of solvation -69.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds