Wall clock time and date at job start Tue Mar 31 2020 07:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45605 * 2 1 4 4 C 1.35457 * 107.86246 * 179.97438 * 3 2 1 5 5 N 1.35532 * 108.87317 * 0.02562 * 4 3 2 6 6 H 0.96997 * 125.67524 * 180.27245 * 5 4 3 7 7 C 1.37656 * 108.64329 * 359.97438 * 5 4 3 8 8 C 1.46674 * 126.23275 * 179.97438 * 7 5 4 9 9 O 1.21691 * 120.00318 * 72.11450 * 8 7 5 10 10 N 1.34780 * 119.99892 * 252.11831 * 8 7 5 11 11 C 1.46498 * 120.00119 * 5.78337 * 10 8 7 12 12 C 1.50702 * 109.47337 * 94.84735 * 11 10 8 13 13 H 1.08000 * 119.99595 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99843 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00538 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99758 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47131 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46933 * 120.00023 * 16 14 12 19 19 H 1.48503 * 109.47194 * 240.00015 * 16 14 12 20 20 C 1.46502 * 120.00078 * 185.78271 * 10 8 7 21 21 C 1.53003 * 109.46761 * 89.99785 * 20 10 8 22 22 C 1.53003 * 109.46910 * 179.97438 * 21 20 10 23 23 N 1.46895 * 109.47148 * 179.97438 * 22 21 20 24 24 C 1.46899 * 111.00133 * 66.04840 * 23 22 21 25 25 C 1.46904 * 110.99958 * 190.00288 * 23 22 21 26 26 H 1.09000 * 109.47203 * 270.00099 * 1 2 3 27 27 H 1.09001 * 109.47309 * 30.00203 * 1 2 3 28 28 H 1.09003 * 109.47242 * 150.00521 * 1 2 3 29 29 H 1.08001 * 126.07119 * 0.02917 * 3 2 1 30 30 H 1.07995 * 125.56201 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47396 * 214.84778 * 11 10 8 32 32 H 1.09004 * 109.46855 * 334.84605 * 11 10 8 33 33 H 0.96992 * 120.00202 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47078 * 209.99811 * 20 10 8 35 35 H 1.08998 * 109.47069 * 330.00249 * 20 10 8 36 36 H 1.08996 * 109.47346 * 299.99862 * 21 20 10 37 37 H 1.08998 * 109.46951 * 60.00391 * 21 20 10 38 38 H 1.08996 * 109.47307 * 300.00794 * 22 21 20 39 39 H 1.09003 * 109.46855 * 59.99954 * 22 21 20 40 40 H 1.09009 * 109.46859 * 59.99592 * 24 23 22 41 41 H 1.08997 * 109.47596 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.47170 * 300.00279 * 24 23 22 43 43 H 1.09000 * 109.47310 * 60.00050 * 25 23 22 44 44 H 1.09007 * 109.47214 * 180.02562 * 25 23 22 45 45 H 1.09000 * 109.46690 * 299.99741 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6284 -0.6625 0.0004 6 1 4.4191 -1.2244 0.0044 7 6 2.3262 -1.1089 0.0002 8 6 1.8898 -2.5092 -0.0005 9 8 2.0178 -3.1871 1.0020 10 7 1.3470 -3.0453 -1.1117 11 6 1.3084 -2.2712 -2.3548 12 6 2.5050 -2.6206 -3.2016 13 1 3.2228 -3.3464 -2.8488 14 6 2.6840 -2.0129 -4.4262 15 7 1.8108 -1.1280 -4.8552 16 14 4.1677 -2.4455 -5.4755 17 1 4.9926 -3.4603 -4.7720 18 1 3.7102 -2.9959 -6.7767 19 1 4.9794 -1.2248 -5.7123 20 6 0.7957 -4.4022 -1.0763 21 6 -0.6840 -4.3414 -0.6919 22 6 -1.2600 -5.7584 -0.6556 23 7 -2.6805 -5.7002 -0.2860 24 6 -3.4687 -5.0293 -1.3284 25 6 -3.2080 -7.0432 -0.0096 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 2.0136 2.1549 0.0004 30 1 4.4972 1.3252 0.0003 31 1 0.3953 -2.5069 -2.9014 32 1 1.3272 -1.2068 -2.1207 33 1 1.9369 -0.7003 -5.7165 34 1 0.8972 -4.8613 -2.0596 35 1 1.3381 -4.9957 -0.3403 36 1 -0.7855 -3.8823 0.2914 37 1 -1.2265 -3.7479 -1.4279 38 1 -1.1585 -6.2173 -1.6390 39 1 -0.7176 -6.3523 0.0801 40 1 -3.3735 -5.5780 -2.2655 41 1 -4.5165 -5.0003 -1.0296 42 1 -3.1008 -4.0123 -1.4640 43 1 -2.6508 -7.4901 0.8137 44 1 -4.2615 -6.9711 0.2611 45 1 -3.1035 -7.6647 -0.8989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280828615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:29 Heat of formation + Delta-G solvation = 6.831155 kcal Electronic energy + Delta-G solvation = -24407.277760 eV Core-core repulsion = 21039.399293 eV Total energy + Delta-G solvation = -3367.878467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72359 -38.63785 -37.49561 -35.16422 -32.88899 -32.16494 -31.47602 -29.12127 -27.59892 -27.35281 -26.68496 -25.47155 -23.00006 -22.88376 -20.93404 -20.41292 -19.89629 -18.18698 -17.22489 -16.43180 -16.03594 -15.56843 -15.26396 -14.98742 -14.63255 -14.34367 -14.02203 -13.79612 -13.59367 -13.04817 -12.77612 -12.54594 -12.39119 -12.30437 -12.19649 -12.08363 -11.77758 -11.72206 -11.57994 -11.48784 -11.21398 -11.13521 -11.05650 -10.88014 -10.75814 -10.29338 -10.09081 -9.71912 -9.30170 -8.55996 -8.33090 -8.18222 -7.78599 -7.39501 -6.16174 -4.22679 2.53714 3.04355 3.19187 3.28043 3.31161 3.39010 3.79228 4.05239 4.21824 4.36893 5.09310 5.16780 5.17488 5.25641 5.37720 5.46286 5.51877 5.57397 5.66651 5.68978 5.70163 5.79241 5.82913 5.87621 5.91170 6.02051 6.16030 6.19213 6.22692 6.47100 6.51237 6.56793 6.62384 6.78734 6.83478 7.05283 7.08273 7.28888 7.39689 7.55655 7.58118 7.76268 8.01267 8.08839 8.28315 8.77331 8.93985 9.43616 10.90906 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.005647 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.954540 B = 4956.800038 C = 6459.160149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.125 4.125 3 C -0.200 4.200 4 C -0.004 4.004 5 N -0.523 5.523 6 H 0.415 0.585 7 C -0.003 4.003 8 C 0.586 3.414 9 O -0.567 6.567 10 N -0.578 5.578 11 C 0.233 3.767 12 C -0.535 4.535 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.120 3.880 21 C -0.129 4.129 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.021 3.979 25 C 0.025 3.975 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.162 0.838 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 -2.643 6.718 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C -0.224 4.224 4 C -0.138 4.138 5 N -0.117 5.117 6 H 0.251 0.749 7 C -0.119 4.119 8 C 0.373 3.627 9 O -0.448 6.448 10 N -0.307 5.307 11 C 0.113 3.887 12 C -0.574 4.574 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.720 3.280 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.004 4.004 21 C -0.168 4.168 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.151 0.849 30 H 0.179 0.821 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.790 -2.718 7.464 9.276 hybrid contribution 1.333 -0.775 -1.730 2.318 sum -3.457 -3.493 5.734 7.552 Atomic orbital electron populations 1.20163 0.90341 1.02384 1.00886 1.19596 0.95076 0.91089 1.07498 1.20532 0.91894 0.98111 1.11897 1.21680 0.99128 0.82907 1.10093 1.41623 1.06815 1.06879 1.56334 0.74851 1.19860 0.84295 0.93575 1.14144 1.17185 0.77825 0.84660 0.83057 1.90733 1.58080 1.62030 1.33915 1.48146 1.56112 1.15119 1.11328 1.19578 0.97406 0.92617 0.79074 1.21455 1.08686 1.24588 1.02675 0.92472 1.24892 0.96466 0.94784 0.97471 1.69930 1.35288 1.26871 1.20405 0.86528 0.82781 0.78308 0.80338 1.19861 1.20830 1.20881 1.21256 0.92531 0.84337 1.02240 1.21950 0.95979 0.96117 1.02753 1.22069 0.87774 0.97814 0.99258 1.61972 1.03008 1.18862 1.43343 1.22445 0.97919 0.99983 0.92385 1.22366 1.00536 0.89310 1.00115 0.92489 0.91781 0.92002 0.84855 0.82102 0.95020 0.92609 0.92658 0.90221 0.90861 0.91042 0.91527 0.94643 0.90774 0.95668 0.91761 0.90679 0.91464 0.91627 0.95866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.00 36.01 0.36 -1.01 16 2 C -0.13 -2.41 5.13 -104.16 -0.53 -2.94 16 3 C -0.20 -3.42 10.76 -39.98 -0.43 -3.86 16 4 C 0.00 -0.06 11.89 -16.91 -0.20 -0.27 16 5 N -0.52 -9.39 6.10 -9.39 -0.06 -9.45 16 6 H 0.42 6.57 8.96 -40.82 -0.37 6.20 16 7 C 0.00 -0.07 5.46 -81.98 -0.45 -0.51 16 8 C 0.59 12.82 7.16 -12.85 -0.09 12.73 16 9 O -0.57 -13.32 16.66 5.20 0.09 -13.23 16 10 N -0.58 -12.30 2.46 -176.60 -0.43 -12.73 16 11 C 0.23 5.59 4.88 -5.19 -0.03 5.56 16 12 C -0.54 -14.04 9.38 -34.44 -0.32 -14.36 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 16 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.12 2.21 5.47 -4.04 -0.02 2.19 16 21 C -0.13 -2.07 5.46 -26.73 -0.15 -2.22 16 22 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 23 N -0.55 -7.10 5.02 -251.25 -1.26 -8.36 16 24 C 0.02 0.25 9.32 60.06 0.56 0.81 16 25 C 0.03 0.26 9.57 60.07 0.57 0.84 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.12 7.58 -51.93 -0.39 0.73 16 29 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 30 H 0.16 1.94 8.06 -52.49 -0.42 1.51 16 31 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.06 1.43 5.44 -51.93 -0.28 1.15 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 35 H 0.07 1.35 7.35 -51.93 -0.38 0.97 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.10 6.55 -51.93 -0.34 0.76 16 38 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 40 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 41 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.07 0.95 6.47 -51.93 -0.34 0.62 16 43 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 45 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -30.98 371.32 -8.75 -39.73 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.55 Total: 7.30 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.84 Total: -0.57 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -1.02 Total: -54.45 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.98 -8.75 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280828615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.556 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds