Wall clock time and date at job start Tue Mar 31 2020 07:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45605 * 2 1 4 4 C 1.35457 * 107.86246 * 179.97438 * 3 2 1 5 5 N 1.35532 * 108.87317 * 0.02562 * 4 3 2 6 6 H 0.96997 * 125.67524 * 180.27245 * 5 4 3 7 7 C 1.37656 * 108.64329 * 359.97438 * 5 4 3 8 8 C 1.46674 * 126.23275 * 179.97438 * 7 5 4 9 9 O 1.21691 * 120.00318 * 72.11450 * 8 7 5 10 10 N 1.34780 * 119.99892 * 252.11831 * 8 7 5 11 11 C 1.46498 * 120.00119 * 5.78337 * 10 8 7 12 12 C 1.50702 * 109.47337 * 94.84735 * 11 10 8 13 13 H 1.08000 * 119.99595 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99843 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00538 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99758 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47131 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46933 * 120.00023 * 16 14 12 19 19 H 1.48503 * 109.47194 * 240.00015 * 16 14 12 20 20 C 1.46502 * 120.00078 * 185.78271 * 10 8 7 21 21 C 1.53003 * 109.46761 * 89.99785 * 20 10 8 22 22 C 1.53003 * 109.46910 * 179.97438 * 21 20 10 23 23 N 1.46895 * 109.47148 * 179.97438 * 22 21 20 24 24 C 1.46899 * 111.00133 * 66.04840 * 23 22 21 25 25 C 1.46904 * 110.99958 * 190.00288 * 23 22 21 26 26 H 1.09000 * 109.47203 * 270.00099 * 1 2 3 27 27 H 1.09001 * 109.47309 * 30.00203 * 1 2 3 28 28 H 1.09003 * 109.47242 * 150.00521 * 1 2 3 29 29 H 1.08001 * 126.07119 * 0.02917 * 3 2 1 30 30 H 1.07995 * 125.56201 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47396 * 214.84778 * 11 10 8 32 32 H 1.09004 * 109.46855 * 334.84605 * 11 10 8 33 33 H 0.96992 * 120.00202 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47078 * 209.99811 * 20 10 8 35 35 H 1.08998 * 109.47069 * 330.00249 * 20 10 8 36 36 H 1.08996 * 109.47346 * 299.99862 * 21 20 10 37 37 H 1.08998 * 109.46951 * 60.00391 * 21 20 10 38 38 H 1.08996 * 109.47307 * 300.00794 * 22 21 20 39 39 H 1.09003 * 109.46855 * 59.99954 * 22 21 20 40 40 H 1.09009 * 109.46859 * 59.99592 * 24 23 22 41 41 H 1.08997 * 109.47596 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.47170 * 300.00279 * 24 23 22 43 43 H 1.09000 * 109.47310 * 60.00050 * 25 23 22 44 44 H 1.09007 * 109.47214 * 180.02562 * 25 23 22 45 45 H 1.09000 * 109.46690 * 299.99741 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6284 -0.6625 0.0004 6 1 4.4191 -1.2244 0.0044 7 6 2.3262 -1.1089 0.0002 8 6 1.8898 -2.5092 -0.0005 9 8 2.0178 -3.1871 1.0020 10 7 1.3470 -3.0453 -1.1117 11 6 1.3084 -2.2712 -2.3548 12 6 2.5050 -2.6206 -3.2016 13 1 3.2228 -3.3464 -2.8488 14 6 2.6840 -2.0129 -4.4262 15 7 1.8108 -1.1280 -4.8552 16 14 4.1677 -2.4455 -5.4755 17 1 4.9926 -3.4603 -4.7720 18 1 3.7102 -2.9959 -6.7767 19 1 4.9794 -1.2248 -5.7123 20 6 0.7957 -4.4022 -1.0763 21 6 -0.6840 -4.3414 -0.6919 22 6 -1.2600 -5.7584 -0.6556 23 7 -2.6805 -5.7002 -0.2860 24 6 -3.4687 -5.0293 -1.3284 25 6 -3.2080 -7.0432 -0.0096 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 2.0136 2.1549 0.0004 30 1 4.4972 1.3252 0.0003 31 1 0.3953 -2.5069 -2.9014 32 1 1.3272 -1.2068 -2.1207 33 1 1.9369 -0.7003 -5.7165 34 1 0.8972 -4.8613 -2.0596 35 1 1.3381 -4.9957 -0.3403 36 1 -0.7855 -3.8823 0.2914 37 1 -1.2265 -3.7479 -1.4279 38 1 -1.1585 -6.2173 -1.6390 39 1 -0.7176 -6.3523 0.0801 40 1 -3.3735 -5.5780 -2.2655 41 1 -4.5165 -5.0003 -1.0296 42 1 -3.1008 -4.0123 -1.4640 43 1 -2.6508 -7.4901 0.8137 44 1 -4.2615 -6.9711 0.2611 45 1 -3.1035 -7.6647 -0.8989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280828615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:29 Heat of formation + Delta-G solvation = -12.564317 kcal Electronic energy + Delta-G solvation = -24408.118811 eV Core-core repulsion = 21039.399293 eV Total energy + Delta-G solvation = -3368.719518 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.15745 -40.23480 -38.61327 -36.88496 -34.77131 -33.58703 -32.95937 -30.48951 -29.25939 -28.48147 -28.08153 -26.83146 -24.94643 -24.14556 -22.19949 -21.70486 -21.32969 -19.65803 -18.92353 -18.36641 -17.65330 -16.94114 -16.54106 -16.25666 -16.20363 -15.74199 -15.43606 -15.09535 -14.93220 -14.49202 -14.43866 -14.07403 -13.88975 -13.59870 -13.48575 -13.31236 -13.22223 -13.14824 -13.01313 -12.74489 -12.65653 -12.60206 -12.43424 -12.38999 -12.35009 -12.08904 -11.68085 -11.51407 -11.02982 -10.60198 -9.56672 -9.53165 -9.31721 -8.83731 -8.19962 -6.34060 1.06382 1.36783 1.38758 1.45995 1.51496 2.03288 2.28469 2.38327 2.76155 3.04860 3.10668 3.78130 3.94518 4.12671 4.22892 4.29907 4.36185 4.38003 4.44795 4.51121 4.54091 4.59134 4.66875 4.74635 4.78755 4.87350 4.88140 4.92283 5.00835 5.02236 5.12376 5.15240 5.18212 5.23719 5.31292 5.48567 5.65154 5.78890 6.03099 6.04287 6.07861 6.12089 6.18118 6.47717 6.72431 6.77599 7.18375 7.37449 8.86335 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.005647 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.954540 B = 4956.800038 C = 6459.160149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.135 4.135 3 C -0.219 4.219 4 C 0.014 3.986 5 N -0.527 5.527 6 H 0.422 0.578 7 C -0.052 4.052 8 C 0.586 3.414 9 O -0.591 6.591 10 N -0.579 5.579 11 C 0.255 3.745 12 C -0.545 4.545 13 H 0.048 0.952 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.955 3.045 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.118 3.882 21 C -0.113 4.113 22 C 0.066 3.934 23 N -0.564 5.564 24 C 0.021 3.979 25 C 0.025 3.975 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.159 0.841 30 H 0.206 0.794 31 H 0.015 0.985 32 H 0.041 0.959 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -2.387 6.542 8.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C -0.243 4.243 4 C -0.120 4.120 5 N -0.121 5.121 6 H 0.259 0.741 7 C -0.166 4.166 8 C 0.374 3.626 9 O -0.473 6.473 10 N -0.307 5.307 11 C 0.134 3.866 12 C -0.583 4.583 13 H 0.066 0.934 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.781 3.219 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.005 4.005 21 C -0.152 4.152 22 C -0.062 4.062 23 N -0.288 5.288 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.177 0.823 30 H 0.223 0.777 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.046 0.954 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.302 -2.486 7.293 8.825 hybrid contribution 1.159 -0.814 -1.644 2.170 sum -3.144 -3.300 5.649 7.258 Atomic orbital electron populations 1.20186 0.89622 1.02125 1.01694 1.20031 0.96035 0.91639 1.06564 1.20938 0.92111 0.98804 1.12448 1.22462 1.00447 0.82315 1.06790 1.41746 1.06241 1.07838 1.56238 0.74094 1.19844 0.85888 0.93096 1.17789 1.17435 0.77257 0.85342 0.82570 1.90695 1.59128 1.63008 1.34517 1.48125 1.56244 1.15830 1.10537 1.19129 0.95901 0.92047 0.79524 1.21618 1.09061 1.24408 1.03253 0.93362 1.25596 0.98935 0.94582 0.98495 1.70025 1.36822 1.27680 1.20925 0.85557 0.79577 0.78106 0.78694 1.19669 1.20268 1.20353 1.21397 0.93891 0.83054 1.02207 1.21747 0.94381 0.97777 1.01250 1.21947 0.88640 0.95841 0.99783 1.61955 1.02527 1.20621 1.43713 1.22449 0.98696 0.99087 0.92428 1.22428 1.01347 0.87933 1.00562 0.91094 0.90259 0.93955 0.82338 0.77721 0.96706 0.94086 0.92395 0.90245 0.90938 0.92770 0.92285 0.94151 0.90185 0.95405 0.89992 0.92153 0.90968 0.90184 0.95251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.00 71.24 0.71 -2.00 16 2 C -0.13 -5.15 5.13 -19.56 -0.10 -5.25 16 3 C -0.22 -7.13 10.76 22.01 0.24 -6.89 16 4 C 0.01 0.43 11.89 83.48 0.99 1.42 16 5 N -0.53 -18.49 6.10 -183.62 -1.12 -19.61 16 6 H 0.42 13.10 8.96 -92.71 -0.83 12.27 16 7 C -0.05 -2.14 5.46 40.35 0.22 -1.92 16 8 C 0.59 26.35 7.16 86.45 0.62 26.96 16 9 O -0.59 -28.51 16.66 -4.32 -0.07 -28.58 16 10 N -0.58 -25.43 2.46 -830.87 -2.04 -27.47 16 11 C 0.25 12.57 4.88 85.63 0.42 12.98 16 12 C -0.54 -28.85 9.38 25.60 0.24 -28.61 16 13 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 14 C 0.02 1.30 5.46 84.65 0.46 1.76 16 15 N -0.92 -50.90 13.29 21.45 0.28 -50.62 16 16 Si 0.96 41.94 29.54 68.60 2.03 43.96 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.12 4.45 5.47 86.38 0.47 4.93 16 21 C -0.11 -3.72 5.46 30.60 0.17 -3.56 16 22 C 0.07 1.80 4.96 86.31 0.43 2.22 16 23 N -0.56 -14.15 5.02 -948.83 -4.76 -18.91 16 24 C 0.02 0.50 9.32 127.69 1.19 1.69 16 25 C 0.03 0.48 9.57 127.69 1.22 1.70 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.58 7.58 -2.39 -0.02 1.57 16 29 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.01 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.04 2.16 5.44 -2.38 -0.01 2.15 16 33 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16 35 H 0.07 2.74 7.35 -2.39 -0.02 2.73 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 2.02 6.55 -2.39 -0.02 2.01 16 38 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 39 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 40 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 42 H 0.06 1.55 6.47 -2.39 -0.02 1.54 16 43 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 44 H 0.08 1.30 8.12 -2.38 -0.02 1.28 16 45 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -66.15 371.32 1.73 -64.42 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.14 Total: 31.37 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 7.28 Total: 5.44 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -7.64 Total: -116.61 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.07 Total: -28.58 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -66.15 1.73 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280828615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.856 kcal (2) G-P(sol) polarization free energy of solvation -66.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds