Wall clock time and date at job start Tue Mar 31 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47303 * 31.68591 * 3 2 1 5 5 C 1.37102 * 120.00029 * 97.36379 * 4 3 2 6 6 H 1.07996 * 119.99918 * 218.95914 * 5 4 3 7 7 C 1.38949 * 120.00093 * 38.68533 * 5 4 3 8 8 N 1.31409 * 120.00224 * 213.64819 * 7 5 4 9 9 Si 1.86811 * 120.00078 * 33.64280 * 7 5 4 10 10 H 1.48496 * 109.46700 * 95.69988 * 9 7 5 11 11 H 1.48500 * 109.46993 * 215.70239 * 9 7 5 12 12 H 1.48496 * 109.46970 * 335.70407 * 9 7 5 13 13 C 1.34771 * 119.99568 * 277.36334 * 4 3 2 14 14 O 1.21288 * 120.00446 * 356.36784 * 13 4 3 15 15 C 1.50704 * 119.99623 * 176.36968 * 13 4 3 16 16 H 1.09001 * 109.47486 * 310.44367 * 15 13 4 17 17 C 1.52993 * 109.47333 * 70.44583 * 15 13 4 18 18 O 1.42909 * 109.47053 * 190.44610 * 15 13 4 19 19 C 1.42900 * 113.99860 * 152.67044 * 18 15 13 20 20 C 1.54246 * 108.89652 * 272.88508 * 19 18 15 21 21 C 1.50470 * 108.52676 * 159.26570 * 20 19 18 22 22 C 1.54069 * 112.49985 * 94.15009 * 21 20 19 23 23 C 1.54067 * 112.81370 * 318.28311 * 22 21 20 24 24 C 1.50470 * 112.49649 * 318.28535 * 23 22 21 25 25 C 1.45539 * 108.89380 * 150.00070 * 19 18 15 26 26 H 4.40644 * 5.51370 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47084 * 271.67890 * 3 2 1 28 28 H 1.09001 * 109.46763 * 151.68159 * 3 2 1 29 29 H 0.96995 * 120.00200 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47393 * 304.05867 * 17 15 13 31 31 H 1.09001 * 109.46842 * 64.05938 * 17 15 13 32 32 H 1.09001 * 109.47176 * 184.05639 * 17 15 13 33 33 H 1.09004 * 108.87375 * 31.39330 * 19 18 15 34 34 H 1.09003 * 109.62518 * 278.98046 * 20 19 18 35 35 H 1.09004 * 109.62936 * 39.55019 * 20 19 18 36 36 H 1.08998 * 108.87761 * 333.36994 * 21 20 19 37 37 H 1.09003 * 108.87613 * 214.92627 * 21 20 19 38 38 H 1.09002 * 108.81534 * 197.42211 * 22 21 20 39 39 H 1.08996 * 108.72702 * 79.08219 * 22 21 20 40 40 H 1.09004 * 108.87646 * 197.50499 * 23 22 21 41 41 H 1.08997 * 108.79807 * 79.00770 * 23 22 21 42 42 H 1.08992 * 109.62981 * 334.44160 * 24 23 22 43 43 H 1.09003 * 109.62996 * 213.86327 * 24 23 22 44 44 H 1.09001 * 108.89685 * 303.44104 * 25 19 18 45 45 H 1.09000 * 108.89354 * 62.02924 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1744 -0.7255 5 6 3.5069 -1.0625 -2.0403 6 1 3.2699 -1.8524 -2.7376 7 6 4.1837 0.0697 -2.4770 8 7 3.9838 0.5268 -3.6927 9 14 5.3778 0.9423 -1.3357 10 1 6.7580 0.4649 -1.6047 11 1 5.3060 2.4069 -1.5702 12 1 5.0187 0.6485 0.0749 13 6 3.2191 -2.3654 -0.1003 14 8 2.9530 -2.4510 1.0799 15 6 3.6438 -3.5909 -0.8678 16 1 3.0596 -3.6658 -1.7850 17 6 5.1296 -3.4845 -1.2168 18 8 3.4246 -4.7541 -0.0671 19 6 3.1919 -5.9444 -0.8227 20 6 1.6863 -6.0474 -1.1415 21 6 1.5089 -6.9660 -2.3200 22 6 1.2267 -8.4203 -1.8968 23 6 2.0999 -8.8780 -0.7128 24 6 3.5259 -8.4136 -0.8358 25 6 3.6775 -7.0871 -0.0634 26 1 -1.0498 -0.0004 0.0000 27 1 3.0094 -0.0293 1.0272 28 1 3.0089 0.9055 -0.4875 29 1 4.4560 1.3173 -3.9973 30 1 5.3086 -2.5602 -1.7660 31 1 5.7189 -3.4823 -0.2998 32 1 5.4199 -4.3354 -1.8331 33 1 3.7461 -5.8815 -1.7592 34 1 1.1562 -6.4516 -0.2791 35 1 1.2952 -5.0595 -1.3851 36 1 2.4160 -6.9441 -2.9239 37 1 0.6762 -6.6069 -2.9249 38 1 1.4146 -9.0765 -2.7466 39 1 0.1777 -8.5049 -1.6132 40 1 2.0865 -9.9669 -0.6650 41 1 1.6776 -8.4797 0.2097 42 1 3.7702 -8.2557 -1.8862 43 1 4.1931 -9.1633 -0.4105 44 1 4.7309 -6.9335 0.1708 45 1 3.1157 -7.1565 0.8681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281545330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:45 Heat of formation + Delta-G solvation = -32.456538 kcal Electronic energy + Delta-G solvation = -24715.225731 eV Core-core repulsion = 21313.350871 eV Total energy + Delta-G solvation = -3401.874860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69465 -38.73237 -36.45783 -35.03384 -32.80912 -32.25036 -31.91469 -31.42436 -29.84732 -26.73665 -25.19484 -24.83273 -24.20907 -22.59610 -20.54821 -19.29748 -19.13695 -18.42334 -16.99088 -16.81728 -15.79013 -15.59646 -15.24037 -14.76844 -14.63284 -14.31643 -14.09504 -13.60652 -13.39751 -13.07725 -12.98656 -12.77013 -12.62938 -12.22444 -12.10574 -12.03445 -12.00239 -11.42699 -11.19980 -11.06714 -10.92694 -10.87635 -10.73674 -10.60467 -10.36286 -10.28688 -10.23221 -10.14571 -9.79684 -9.41692 -9.24418 -9.08127 -8.44160 -7.92213 -6.66725 -4.14908 3.02175 3.17841 3.23224 3.25243 3.56269 3.67092 3.87383 4.07340 4.57864 4.67602 4.77438 4.81904 4.97806 5.11257 5.14894 5.22086 5.28044 5.35547 5.38991 5.59700 5.65288 5.72355 5.83801 5.85949 5.87593 5.94382 6.05942 6.11796 6.15228 6.17203 6.17571 6.24796 6.27380 6.34219 6.36951 6.47150 6.50488 6.53693 6.57798 6.90916 7.21402 7.71109 7.94409 8.14344 8.30294 8.86662 9.26109 9.61022 10.43284 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.004536 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.530133 B = 6170.911276 C = 6563.470397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.163 4.163 3 C 0.217 3.783 4 N -0.458 5.458 5 C -0.363 4.363 6 H 0.101 0.899 7 C 0.080 3.920 8 N -0.833 5.833 9 Si 0.846 3.154 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.254 1.254 13 C 0.489 3.511 14 O -0.573 6.573 15 C 0.093 3.907 16 H 0.078 0.922 17 C -0.168 4.168 18 O -0.362 6.362 19 C 0.094 3.906 20 C -0.140 4.140 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.111 4.111 25 C -0.119 4.119 26 H 0.211 0.789 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.277 0.723 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 -12.425 1.285 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.165 4.165 3 C 0.095 3.905 4 N -0.180 5.180 5 C -0.489 4.489 6 H 0.119 0.881 7 C -0.130 4.130 8 N -0.465 5.465 9 Si 0.669 3.331 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.178 1.178 13 C 0.278 3.722 14 O -0.455 6.455 15 C 0.033 3.967 16 H 0.096 0.904 17 C -0.225 4.225 18 O -0.280 6.280 19 C 0.036 3.964 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.148 4.148 25 C -0.156 4.156 26 H 0.228 0.772 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.440 -12.319 1.897 12.547 hybrid contribution 0.383 0.661 -0.112 0.773 sum -1.057 -11.657 1.785 11.840 Atomic orbital electron populations 1.24636 0.95630 1.01656 1.03124 1.23890 0.95064 0.99221 0.98284 1.18609 0.83287 0.90575 0.98045 1.43520 1.56738 1.06018 1.11734 1.18871 1.38943 1.08365 0.82682 0.88145 1.25282 0.96398 0.95708 0.95612 1.69966 1.36262 1.21004 1.19301 0.87353 0.83263 0.79153 0.83295 1.19749 1.20476 1.17805 1.20202 0.80123 0.85028 0.86827 1.90567 1.53108 1.85975 1.15841 1.21604 0.97126 0.84680 0.93315 0.90394 1.22208 0.94552 1.03859 1.01913 1.88057 1.91777 1.15177 1.33028 1.20967 0.94556 0.85975 0.94861 1.21866 0.97153 1.00074 0.98683 1.21288 1.01889 0.94447 0.97944 1.21915 0.99429 0.96102 0.97886 1.21377 0.95434 1.00027 0.99012 1.21235 0.96642 0.96196 1.00772 1.20507 1.02134 0.93288 0.99694 0.77232 0.89371 0.89123 0.91307 0.88436 0.92560 0.93025 0.92767 0.91162 0.91309 0.92071 0.92122 0.92481 0.92434 0.92529 0.91850 0.91541 0.91634 0.91454 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.51 19.25 29.55 0.57 -3.94 16 2 C -0.16 -3.63 13.59 -37.12 -0.50 -4.14 16 3 C 0.22 4.98 4.05 -6.83 -0.03 4.95 16 4 N -0.46 -11.06 2.11 -117.94 -0.25 -11.31 16 5 C -0.36 -9.01 7.05 -14.93 -0.11 -9.11 16 6 H 0.10 2.59 6.99 -52.49 -0.37 2.23 16 7 C 0.08 2.00 4.96 -17.47 -0.09 1.92 16 8 N -0.83 -21.73 13.96 55.50 0.77 -20.96 16 9 Si 0.85 18.78 26.38 -169.99 -4.48 14.30 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.25 -5.61 6.05 56.52 0.34 -5.26 16 13 C 0.49 11.83 6.93 -10.99 -0.08 11.75 16 14 O -0.57 -15.32 16.21 -14.14 -0.23 -15.54 16 15 C 0.09 1.92 2.03 -27.88 -0.06 1.86 16 16 H 0.08 1.57 6.54 -51.93 -0.34 1.23 16 17 C -0.17 -3.13 9.31 37.15 0.35 -2.78 16 18 O -0.36 -7.12 9.10 -54.92 -0.50 -7.62 16 19 C 0.09 1.42 1.91 -29.60 -0.06 1.37 16 20 C -0.14 -1.99 5.16 -27.34 -0.14 -2.13 16 21 C -0.12 -1.36 5.31 -27.44 -0.15 -1.51 16 22 C -0.12 -1.13 5.85 -25.62 -0.15 -1.28 16 23 C -0.12 -1.17 5.32 -27.44 -0.15 -1.31 16 24 C -0.11 -1.12 5.61 -27.35 -0.15 -1.27 16 25 C -0.12 -1.53 4.82 -29.60 -0.14 -1.67 16 26 H 0.21 3.08 7.80 -54.10 -0.42 2.66 16 27 H 0.09 1.98 7.59 -51.93 -0.39 1.59 16 28 H 0.09 2.03 4.92 -51.93 -0.26 1.77 16 29 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.10 1.97 6.17 -51.93 -0.32 1.65 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.82 7.73 -51.93 -0.40 0.41 16 33 H 0.05 0.79 6.69 -51.93 -0.35 0.44 16 34 H 0.07 0.99 6.97 -51.93 -0.36 0.63 16 35 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 36 H 0.06 0.69 6.63 -51.93 -0.34 0.35 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.66 6.62 -51.93 -0.34 0.31 16 42 H 0.07 0.66 6.98 -51.93 -0.36 0.30 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.94 7.46 -51.93 -0.39 0.55 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -29.32 351.22 -7.47 -36.79 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.20 Total: 6.35 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.88 Total: -7.29 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.53 Total: -32.27 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.73 Total: -23.17 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.48 Total: 14.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.32 -7.47 -36.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281545330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.333 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds