Wall clock time and date at job start Tue Mar 31 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47303 * 31.68591 * 3 2 1 5 5 C 1.37102 * 120.00029 * 97.36379 * 4 3 2 6 6 H 1.07996 * 119.99918 * 218.95914 * 5 4 3 7 7 C 1.38949 * 120.00093 * 38.68533 * 5 4 3 8 8 N 1.31409 * 120.00224 * 213.64819 * 7 5 4 9 9 Si 1.86811 * 120.00078 * 33.64280 * 7 5 4 10 10 H 1.48496 * 109.46700 * 95.69988 * 9 7 5 11 11 H 1.48500 * 109.46993 * 215.70239 * 9 7 5 12 12 H 1.48496 * 109.46970 * 335.70407 * 9 7 5 13 13 C 1.34771 * 119.99568 * 277.36334 * 4 3 2 14 14 O 1.21288 * 120.00446 * 356.36784 * 13 4 3 15 15 C 1.50704 * 119.99623 * 176.36968 * 13 4 3 16 16 H 1.09001 * 109.47486 * 310.44367 * 15 13 4 17 17 C 1.52993 * 109.47333 * 70.44583 * 15 13 4 18 18 O 1.42909 * 109.47053 * 190.44610 * 15 13 4 19 19 C 1.42900 * 113.99860 * 152.67044 * 18 15 13 20 20 C 1.54246 * 108.89652 * 272.88508 * 19 18 15 21 21 C 1.50470 * 108.52676 * 159.26570 * 20 19 18 22 22 C 1.54069 * 112.49985 * 94.15009 * 21 20 19 23 23 C 1.54067 * 112.81370 * 318.28311 * 22 21 20 24 24 C 1.50470 * 112.49649 * 318.28535 * 23 22 21 25 25 C 1.45539 * 108.89380 * 150.00070 * 19 18 15 26 26 H 4.40644 * 5.51370 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47084 * 271.67890 * 3 2 1 28 28 H 1.09001 * 109.46763 * 151.68159 * 3 2 1 29 29 H 0.96995 * 120.00200 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47393 * 304.05867 * 17 15 13 31 31 H 1.09001 * 109.46842 * 64.05938 * 17 15 13 32 32 H 1.09001 * 109.47176 * 184.05639 * 17 15 13 33 33 H 1.09004 * 108.87375 * 31.39330 * 19 18 15 34 34 H 1.09003 * 109.62518 * 278.98046 * 20 19 18 35 35 H 1.09004 * 109.62936 * 39.55019 * 20 19 18 36 36 H 1.08998 * 108.87761 * 333.36994 * 21 20 19 37 37 H 1.09003 * 108.87613 * 214.92627 * 21 20 19 38 38 H 1.09002 * 108.81534 * 197.42211 * 22 21 20 39 39 H 1.08996 * 108.72702 * 79.08219 * 22 21 20 40 40 H 1.09004 * 108.87646 * 197.50499 * 23 22 21 41 41 H 1.08997 * 108.79807 * 79.00770 * 23 22 21 42 42 H 1.08992 * 109.62981 * 334.44160 * 24 23 22 43 43 H 1.09003 * 109.62996 * 213.86327 * 24 23 22 44 44 H 1.09001 * 108.89685 * 303.44104 * 25 19 18 45 45 H 1.09000 * 108.89354 * 62.02924 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1744 -0.7255 5 6 3.5069 -1.0625 -2.0403 6 1 3.2699 -1.8524 -2.7376 7 6 4.1837 0.0697 -2.4770 8 7 3.9838 0.5268 -3.6927 9 14 5.3778 0.9423 -1.3357 10 1 6.7580 0.4649 -1.6047 11 1 5.3060 2.4069 -1.5702 12 1 5.0187 0.6485 0.0749 13 6 3.2191 -2.3654 -0.1003 14 8 2.9530 -2.4510 1.0799 15 6 3.6438 -3.5909 -0.8678 16 1 3.0596 -3.6658 -1.7850 17 6 5.1296 -3.4845 -1.2168 18 8 3.4246 -4.7541 -0.0671 19 6 3.1919 -5.9444 -0.8227 20 6 1.6863 -6.0474 -1.1415 21 6 1.5089 -6.9660 -2.3200 22 6 1.2267 -8.4203 -1.8968 23 6 2.0999 -8.8780 -0.7128 24 6 3.5259 -8.4136 -0.8358 25 6 3.6775 -7.0871 -0.0634 26 1 -1.0498 -0.0004 0.0000 27 1 3.0094 -0.0293 1.0272 28 1 3.0089 0.9055 -0.4875 29 1 4.4560 1.3173 -3.9973 30 1 5.3086 -2.5602 -1.7660 31 1 5.7189 -3.4823 -0.2998 32 1 5.4199 -4.3354 -1.8331 33 1 3.7461 -5.8815 -1.7592 34 1 1.1562 -6.4516 -0.2791 35 1 1.2952 -5.0595 -1.3851 36 1 2.4160 -6.9441 -2.9239 37 1 0.6762 -6.6069 -2.9249 38 1 1.4146 -9.0765 -2.7466 39 1 0.1777 -8.5049 -1.6132 40 1 2.0865 -9.9669 -0.6650 41 1 1.6776 -8.4797 0.2097 42 1 3.7702 -8.2557 -1.8862 43 1 4.1931 -9.1633 -0.4105 44 1 4.7309 -6.9335 0.1708 45 1 3.1157 -7.1565 0.8681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281545330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:44 Heat of formation + Delta-G solvation = -47.280393 kcal Electronic energy + Delta-G solvation = -24715.868542 eV Core-core repulsion = 21313.350871 eV Total energy + Delta-G solvation = -3402.517671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21597 -40.20186 -37.78860 -36.91800 -34.55988 -33.73949 -33.17767 -32.74202 -31.22480 -28.48508 -27.03175 -25.93876 -25.24666 -24.10123 -21.67892 -21.00286 -20.17385 -20.10677 -18.69349 -18.28851 -17.53514 -17.01359 -16.76706 -16.19945 -16.02327 -15.77995 -15.40096 -14.96438 -14.92074 -14.66795 -14.38762 -14.12565 -13.94899 -13.79046 -13.62057 -13.28388 -13.05949 -13.04997 -12.85522 -12.74225 -12.38574 -12.12260 -12.02135 -11.95914 -11.54008 -11.41289 -11.38404 -11.24148 -11.15866 -11.12669 -11.07711 -10.57109 -10.25051 -9.86000 -8.61679 -6.12417 1.22477 1.35868 1.45806 1.54661 1.80984 1.90939 2.20897 2.38609 2.79306 3.19191 3.57875 3.65331 3.85349 3.97451 4.03699 4.13813 4.19020 4.24598 4.28949 4.31712 4.36894 4.40671 4.44749 4.50019 4.56705 4.77120 4.86760 4.93254 4.97449 5.00212 5.04276 5.11841 5.21914 5.27108 5.30681 5.31801 5.35365 5.37682 5.38647 5.46169 5.58125 5.99424 6.15908 6.32713 6.67985 6.92017 7.33757 7.70669 8.51672 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.004536 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.530133 B = 6170.911276 C = 6563.470397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.232 4.232 3 C 0.214 3.786 4 N -0.460 5.460 5 C -0.362 4.362 6 H 0.084 0.916 7 C 0.054 3.946 8 N -0.865 5.865 9 Si 0.894 3.106 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.257 1.257 13 C 0.478 3.522 14 O -0.606 6.606 15 C 0.101 3.899 16 H 0.077 0.923 17 C -0.159 4.159 18 O -0.385 6.385 19 C 0.090 3.910 20 C -0.136 4.136 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.103 4.103 25 C -0.117 4.117 26 H 0.257 0.743 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.283 0.717 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 -13.776 0.956 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.233 4.233 3 C 0.092 3.908 4 N -0.182 5.182 5 C -0.488 4.488 6 H 0.102 0.898 7 C -0.155 4.155 8 N -0.499 5.499 9 Si 0.716 3.284 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.181 1.181 13 C 0.268 3.732 14 O -0.491 6.491 15 C 0.041 3.959 16 H 0.094 0.906 17 C -0.216 4.216 18 O -0.304 6.304 19 C 0.033 3.967 20 C -0.174 4.174 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.141 4.141 25 C -0.155 4.155 26 H 0.273 0.727 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.564 -13.665 1.556 13.842 hybrid contribution 0.300 1.072 -0.005 1.113 sum -1.263 -12.594 1.550 12.751 Atomic orbital electron populations 1.25701 0.96552 0.98452 0.99919 1.24064 0.95750 1.02207 1.01275 1.18560 0.84555 0.90104 0.97602 1.43635 1.56513 1.06569 1.11473 1.18726 1.39353 1.08061 0.82639 0.89839 1.25687 0.96978 0.96205 0.96582 1.69988 1.37223 1.21967 1.20695 0.86598 0.81537 0.78700 0.81538 1.19109 1.19578 1.18084 1.20892 0.79544 0.86026 0.86760 1.90525 1.54682 1.86582 1.17276 1.21462 0.98097 0.83893 0.92480 0.90570 1.22122 0.93130 1.04327 1.02067 1.88035 1.92021 1.16049 1.34297 1.21286 0.95242 0.85002 0.95218 1.21810 0.96447 0.99262 0.99849 1.21266 1.02211 0.95215 0.96636 1.21904 0.99727 0.94770 0.98631 1.21387 0.94918 1.01243 0.98356 1.21224 0.97435 0.94695 1.00699 1.20536 1.01603 0.93923 0.99437 0.72673 0.89806 0.89126 0.90662 0.90043 0.92710 0.89997 0.91948 0.91458 0.94135 0.91625 0.91993 0.90763 0.92114 0.90509 0.92981 0.90948 0.89809 0.91651 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.97 19.25 74.32 1.43 -5.54 16 2 C -0.23 -10.31 13.59 31.12 0.42 -9.89 16 3 C 0.21 10.00 4.05 84.57 0.34 10.34 16 4 N -0.46 -22.73 2.11 -645.43 -1.36 -24.09 16 5 C -0.36 -18.30 7.05 84.04 0.59 -17.71 16 6 H 0.08 4.44 6.99 -2.91 -0.02 4.42 16 7 C 0.05 2.70 4.96 84.93 0.42 3.12 16 8 N -0.87 -45.28 13.96 21.66 0.30 -44.98 16 9 Si 0.89 38.70 26.38 68.60 1.81 40.51 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 12 H -0.26 -11.17 6.05 99.48 0.60 -10.57 16 13 C 0.48 23.70 6.93 87.66 0.61 24.31 16 14 O -0.61 -33.34 16.21 15.77 0.26 -33.08 16 15 C 0.10 4.24 2.03 29.85 0.06 4.30 16 16 H 0.08 3.16 6.54 -2.39 -0.02 3.15 16 17 C -0.16 -5.90 9.31 71.98 0.67 -5.23 16 18 O -0.38 -15.37 9.10 -130.16 -1.18 -16.55 16 19 C 0.09 2.67 1.91 28.74 0.05 2.73 16 20 C -0.14 -3.88 5.16 30.20 0.16 -3.72 16 21 C -0.12 -2.52 5.31 30.14 0.16 -2.36 16 22 C -0.11 -1.93 5.85 31.32 0.18 -1.75 16 23 C -0.12 -2.04 5.32 30.14 0.16 -1.88 16 24 C -0.10 -1.82 5.61 30.20 0.17 -1.65 16 25 C -0.12 -2.90 4.82 28.74 0.14 -2.76 16 26 H 0.26 6.50 7.80 -4.43 -0.03 6.47 16 27 H 0.08 3.89 7.59 -2.39 -0.02 3.87 16 28 H 0.09 4.11 4.92 -2.39 -0.01 4.10 16 29 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.08 3.30 6.17 -2.39 -0.01 3.28 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.49 7.73 -2.39 -0.02 2.47 16 33 H 0.06 1.74 6.69 -2.39 -0.02 1.73 16 34 H 0.07 1.92 6.97 -2.39 -0.02 1.90 16 35 H 0.04 1.36 7.63 -2.38 -0.02 1.34 16 36 H 0.07 1.37 6.63 -2.39 -0.02 1.35 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.05 1.00 6.62 -2.39 -0.02 0.98 16 42 H 0.07 1.22 6.98 -2.39 -0.02 1.20 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.58 7.46 -2.39 -0.02 1.56 16 Total: -1.00 -63.92 351.22 6.25 -57.67 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.86 Total: 28.20 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.57 Total: -7.68 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -1.06 Total: -69.06 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.93 Total: -49.63 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.81 Total: 40.51 kcal Total: -63.92 6.25 -57.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281545330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.391 kcal (2) G-P(sol) polarization free energy of solvation -63.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds