Wall clock time and date at job start Tue Mar 31 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47095 * 177.25993 * 3 2 1 5 5 C 1.37094 * 120.00083 * 95.99855 * 4 3 2 6 6 H 1.08006 * 120.00114 * 156.29504 * 5 4 3 7 7 C 1.38948 * 120.00323 * 336.29906 * 5 4 3 8 8 N 1.31415 * 119.99636 * 345.52941 * 7 5 4 9 9 Si 1.86792 * 120.00232 * 165.52853 * 7 5 4 10 10 H 1.48505 * 109.47419 * 60.00178 * 9 7 5 11 11 H 1.48501 * 109.47302 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47301 * 300.00312 * 9 7 5 13 13 C 1.34777 * 119.99994 * 276.00264 * 4 3 2 14 14 O 1.21295 * 120.00271 * 184.33156 * 13 4 3 15 15 C 1.50700 * 119.99939 * 4.33176 * 13 4 3 16 16 H 1.08996 * 109.47284 * 40.77236 * 15 13 4 17 17 C 1.53004 * 109.47302 * 280.76947 * 15 13 4 18 18 O 1.42900 * 109.47259 * 160.76975 * 15 13 4 19 19 C 1.42900 * 114.00237 * 219.43764 * 18 15 13 20 20 C 1.54242 * 108.89651 * 265.04959 * 19 18 15 21 21 C 1.50557 * 108.48286 * 159.17671 * 20 19 18 22 22 C 1.54064 * 112.41603 * 94.26768 * 21 20 19 23 23 C 1.54066 * 112.81456 * 318.28134 * 22 21 20 24 24 C 1.50470 * 112.49548 * 318.28062 * 23 22 21 25 25 C 1.45542 * 108.89791 * 142.25923 * 19 18 15 26 26 H 4.40640 * 5.51421 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47309 * 57.25973 * 3 2 1 28 28 H 1.09001 * 109.47439 * 297.26091 * 3 2 1 29 29 H 0.97005 * 119.99923 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46535 * 54.92186 * 17 15 13 31 31 H 1.09002 * 109.47282 * 174.92100 * 17 15 13 32 32 H 1.08996 * 109.47025 * 294.92225 * 17 15 13 33 33 H 1.08999 * 108.87285 * 23.65729 * 19 18 15 34 34 H 1.08997 * 109.63231 * 278.97404 * 20 19 18 35 35 H 1.08996 * 109.62539 * 39.55337 * 20 19 18 36 36 H 1.09001 * 108.92225 * 333.51121 * 21 20 19 37 37 H 1.08996 * 108.91573 * 215.02146 * 21 20 19 38 38 H 1.08994 * 108.81962 * 197.41968 * 22 21 20 39 39 H 1.09003 * 108.72495 * 79.07850 * 22 21 20 40 40 H 1.08999 * 108.87719 * 197.50388 * 23 22 21 41 41 H 1.09000 * 108.88021 * 79.06215 * 23 22 21 42 42 H 1.08996 * 109.62837 * 334.44352 * 24 23 22 43 43 H 1.09004 * 109.62936 * 213.86679 * 24 23 22 44 44 H 1.09001 * 108.89656 * 303.44589 * 25 19 18 45 45 H 1.09002 * 108.89640 * 62.02841 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3805 -0.0660 5 6 3.4789 2.0413 1.0845 6 1 4.1722 2.8685 1.0448 7 6 2.9368 1.6470 2.3016 8 7 1.8950 0.8464 2.3282 9 14 3.6890 2.2546 3.8997 10 1 3.6274 3.7378 3.9434 11 1 2.9325 1.6933 5.0478 12 1 5.1054 1.8156 3.9787 13 6 3.2430 2.0003 -1.2578 14 8 3.7201 3.1137 -1.3210 15 6 2.7723 1.3101 -2.5120 16 1 1.8351 0.7909 -2.3112 17 6 3.8281 0.2997 -2.9651 18 8 2.5683 2.2799 -3.5416 19 6 1.4152 2.0361 -4.3496 20 6 1.8440 1.2572 -5.6099 21 6 0.6329 0.5681 -6.1802 22 6 -0.0537 1.4010 -7.2795 23 6 -0.1357 2.8994 -6.9303 24 6 -0.5072 3.1357 -5.4915 25 6 0.7885 3.3093 -4.6730 26 1 -1.0502 -0.0004 0.0002 27 1 3.0096 -0.5550 -0.8644 28 1 3.0096 -0.4699 0.9135 29 1 1.5168 0.5707 3.1779 30 1 4.0493 -0.3860 -2.1472 31 1 3.4500 -0.2629 -3.8188 32 1 4.7372 0.8282 -3.2521 33 1 0.7093 1.4292 -3.7826 34 1 2.2542 1.9487 -6.3459 35 1 2.5952 0.5140 -5.3431 36 1 -0.0815 0.3868 -5.3772 37 1 0.9372 -0.3898 -6.6018 38 1 -1.0635 1.0196 -7.4306 39 1 0.5072 1.2864 -8.2071 40 1 -0.8828 3.3700 -7.5694 41 1 0.8327 3.3603 -7.1248 42 1 -1.0678 2.2810 -5.1129 43 1 -1.1134 4.0383 -5.4133 44 1 0.5532 3.8324 -3.7462 45 1 1.4904 3.9119 -5.2494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281545333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:47 Heat of formation + Delta-G solvation = -27.196355 kcal Electronic energy + Delta-G solvation = -24814.623705 eV Core-core repulsion = 21412.976944 eV Total energy + Delta-G solvation = -3401.646762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70537 -38.57160 -36.40908 -35.02370 -32.52059 -32.14996 -31.55564 -31.16903 -29.94900 -26.40857 -25.22767 -24.76665 -24.25479 -22.74347 -20.65267 -19.35674 -19.16250 -17.87841 -16.97330 -16.52211 -15.83049 -15.73540 -15.03341 -14.87030 -14.54138 -14.12130 -13.97812 -13.55867 -13.38560 -13.22875 -13.06822 -12.69533 -12.35643 -12.16822 -12.08807 -11.80584 -11.70874 -11.53570 -11.28724 -11.05454 -10.96797 -10.66752 -10.60739 -10.50179 -10.39467 -10.35109 -10.31657 -10.21311 -9.37826 -9.32942 -9.21045 -8.85471 -8.19374 -7.79213 -6.27168 -3.89327 3.19539 3.25716 3.28317 3.58514 3.88810 3.93907 4.03844 4.23030 4.61734 4.73855 4.82965 5.01230 5.06221 5.08500 5.19254 5.23063 5.34077 5.36086 5.40597 5.45798 5.54987 5.60828 5.69193 5.73064 5.84362 5.88047 5.95593 6.04142 6.08216 6.11720 6.13595 6.19862 6.25791 6.28014 6.35953 6.42281 6.48857 6.57266 6.73210 7.02362 7.57743 7.60864 8.12196 8.46708 8.81336 9.16108 9.35980 9.92768 10.72427 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.004107 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.827743 B = 6816.799907 C = 6976.144993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.110 4.110 3 C 0.227 3.773 4 N -0.442 5.442 5 C -0.313 4.313 6 H 0.101 0.899 7 C 0.031 3.969 8 N -0.870 5.870 9 Si 0.925 3.075 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.457 3.543 14 O -0.561 6.561 15 C 0.076 3.924 16 H 0.075 0.925 17 C -0.168 4.168 18 O -0.353 6.353 19 C 0.093 3.907 20 C -0.138 4.138 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.124 4.124 26 H 0.198 0.802 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.268 0.732 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -4.601 -14.319 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.111 4.111 3 C 0.104 3.896 4 N -0.163 5.163 5 C -0.440 4.440 6 H 0.119 0.881 7 C -0.172 4.172 8 N -0.508 5.508 9 Si 0.752 3.248 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.244 3.756 14 O -0.443 6.443 15 C 0.015 3.985 16 H 0.093 0.907 17 C -0.226 4.226 18 O -0.271 6.271 19 C 0.035 3.965 20 C -0.175 4.175 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.162 4.162 26 H 0.215 0.785 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.382 -3.951 -14.211 15.387 hybrid contribution -0.312 -0.057 1.061 1.107 sum -4.693 -4.008 -13.150 14.526 Atomic orbital electron populations 1.24243 0.95336 1.02198 1.06526 1.23165 0.94352 0.98278 0.95349 1.18409 0.84357 0.85090 1.01748 1.43574 1.57024 1.10510 1.05203 1.19587 1.25000 1.16435 0.82977 0.88136 1.25339 0.94924 0.97374 0.99604 1.69984 1.19349 1.34771 1.26666 0.86015 0.78953 0.79228 0.80609 1.19878 1.21047 1.19901 1.20071 0.84526 0.86676 0.84326 1.90530 1.47566 1.20046 1.86128 1.22076 0.98890 0.89451 0.88086 0.90744 1.22338 1.00010 0.98649 1.01567 1.88054 1.45166 1.49628 1.44210 1.21121 0.87509 0.96490 0.91335 1.21935 0.97876 0.99900 0.97821 1.21313 0.97359 0.98463 0.98505 1.21911 1.00179 0.94965 0.98265 1.21377 1.01696 0.96114 0.96610 1.21239 0.96831 1.01876 0.94961 1.20589 0.96613 0.97647 1.01337 0.78488 0.91784 0.87364 0.92131 0.90981 0.92168 0.91325 0.92655 0.91132 0.91135 0.92031 0.92204 0.92469 0.92458 0.92516 0.91867 0.91585 0.91564 0.91219 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.42 19.25 29.55 0.57 -4.85 16 2 C -0.11 -2.43 10.06 -37.12 -0.37 -2.81 16 3 C 0.23 4.98 4.82 -6.83 -0.03 4.95 16 4 N -0.44 -11.28 2.59 -117.93 -0.31 -11.59 16 5 C -0.31 -8.68 9.27 -14.94 -0.14 -8.81 16 6 H 0.10 2.93 7.41 -52.48 -0.39 2.54 16 7 C 0.03 0.82 5.00 -17.47 -0.09 0.73 16 8 N -0.87 -22.82 9.30 55.50 0.52 -22.30 16 9 Si 0.93 20.68 29.58 -169.99 -5.03 15.66 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.46 11.55 6.84 -10.99 -0.08 11.47 16 14 O -0.56 -16.44 16.30 -13.59 -0.22 -16.66 16 15 C 0.08 1.52 2.39 -27.88 -0.07 1.45 16 16 H 0.07 1.43 5.50 -51.93 -0.29 1.14 16 17 C -0.17 -2.71 9.05 37.16 0.34 -2.38 16 18 O -0.35 -6.95 9.13 -54.36 -0.50 -7.45 16 19 C 0.09 1.42 2.14 -29.60 -0.06 1.35 16 20 C -0.14 -1.69 5.24 -27.30 -0.14 -1.84 16 21 C -0.12 -1.21 5.32 -27.40 -0.15 -1.35 16 22 C -0.12 -1.04 5.85 -25.62 -0.15 -1.19 16 23 C -0.12 -1.15 5.31 -27.44 -0.15 -1.30 16 24 C -0.11 -1.22 5.61 -27.35 -0.15 -1.37 16 25 C -0.12 -1.75 4.82 -29.60 -0.14 -1.90 16 26 H 0.20 3.31 7.80 -54.08 -0.42 2.89 16 27 H 0.06 1.17 4.82 -51.93 -0.25 0.92 16 28 H 0.11 2.49 6.68 -51.93 -0.35 2.14 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.07 1.10 5.87 -51.93 -0.30 0.80 16 31 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.85 6.48 -51.93 -0.34 0.51 16 34 H 0.07 0.86 6.97 -51.93 -0.36 0.49 16 35 H 0.07 0.88 6.15 -51.93 -0.32 0.56 16 36 H 0.06 0.65 6.63 -51.93 -0.34 0.30 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.63 6.62 -51.93 -0.34 0.29 16 42 H 0.07 0.71 6.98 -51.93 -0.36 0.35 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 0.99 7.46 -51.93 -0.39 0.60 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -31.84 346.28 -8.01 -39.85 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.88 Total: 5.11 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.81 Total: -7.83 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.21 Total: -33.89 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.72 Total: -24.11 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.84 -8.01 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281545333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.655 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds