Wall clock time and date at job start Tue Mar 31 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47095 * 177.25993 * 3 2 1 5 5 C 1.37094 * 120.00083 * 95.99855 * 4 3 2 6 6 H 1.08006 * 120.00114 * 156.29504 * 5 4 3 7 7 C 1.38948 * 120.00323 * 336.29906 * 5 4 3 8 8 N 1.31415 * 119.99636 * 345.52941 * 7 5 4 9 9 Si 1.86792 * 120.00232 * 165.52853 * 7 5 4 10 10 H 1.48505 * 109.47419 * 60.00178 * 9 7 5 11 11 H 1.48501 * 109.47302 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47301 * 300.00312 * 9 7 5 13 13 C 1.34777 * 119.99994 * 276.00264 * 4 3 2 14 14 O 1.21295 * 120.00271 * 184.33156 * 13 4 3 15 15 C 1.50700 * 119.99939 * 4.33176 * 13 4 3 16 16 H 1.08996 * 109.47284 * 40.77236 * 15 13 4 17 17 C 1.53004 * 109.47302 * 280.76947 * 15 13 4 18 18 O 1.42900 * 109.47259 * 160.76975 * 15 13 4 19 19 C 1.42900 * 114.00237 * 219.43764 * 18 15 13 20 20 C 1.54242 * 108.89651 * 265.04959 * 19 18 15 21 21 C 1.50557 * 108.48286 * 159.17671 * 20 19 18 22 22 C 1.54064 * 112.41603 * 94.26768 * 21 20 19 23 23 C 1.54066 * 112.81456 * 318.28134 * 22 21 20 24 24 C 1.50470 * 112.49548 * 318.28062 * 23 22 21 25 25 C 1.45542 * 108.89791 * 142.25923 * 19 18 15 26 26 H 4.40640 * 5.51421 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47309 * 57.25973 * 3 2 1 28 28 H 1.09001 * 109.47439 * 297.26091 * 3 2 1 29 29 H 0.97005 * 119.99923 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46535 * 54.92186 * 17 15 13 31 31 H 1.09002 * 109.47282 * 174.92100 * 17 15 13 32 32 H 1.08996 * 109.47025 * 294.92225 * 17 15 13 33 33 H 1.08999 * 108.87285 * 23.65729 * 19 18 15 34 34 H 1.08997 * 109.63231 * 278.97404 * 20 19 18 35 35 H 1.08996 * 109.62539 * 39.55337 * 20 19 18 36 36 H 1.09001 * 108.92225 * 333.51121 * 21 20 19 37 37 H 1.08996 * 108.91573 * 215.02146 * 21 20 19 38 38 H 1.08994 * 108.81962 * 197.41968 * 22 21 20 39 39 H 1.09003 * 108.72495 * 79.07850 * 22 21 20 40 40 H 1.08999 * 108.87719 * 197.50388 * 23 22 21 41 41 H 1.09000 * 108.88021 * 79.06215 * 23 22 21 42 42 H 1.08996 * 109.62837 * 334.44352 * 24 23 22 43 43 H 1.09004 * 109.62936 * 213.86679 * 24 23 22 44 44 H 1.09001 * 108.89656 * 303.44589 * 25 19 18 45 45 H 1.09002 * 108.89640 * 62.02841 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3805 -0.0660 5 6 3.4789 2.0413 1.0845 6 1 4.1722 2.8685 1.0448 7 6 2.9368 1.6470 2.3016 8 7 1.8950 0.8464 2.3282 9 14 3.6890 2.2546 3.8997 10 1 3.6274 3.7378 3.9434 11 1 2.9325 1.6933 5.0478 12 1 5.1054 1.8156 3.9787 13 6 3.2430 2.0003 -1.2578 14 8 3.7201 3.1137 -1.3210 15 6 2.7723 1.3101 -2.5120 16 1 1.8351 0.7909 -2.3112 17 6 3.8281 0.2997 -2.9651 18 8 2.5683 2.2799 -3.5416 19 6 1.4152 2.0361 -4.3496 20 6 1.8440 1.2572 -5.6099 21 6 0.6329 0.5681 -6.1802 22 6 -0.0537 1.4010 -7.2795 23 6 -0.1357 2.8994 -6.9303 24 6 -0.5072 3.1357 -5.4915 25 6 0.7885 3.3093 -4.6730 26 1 -1.0502 -0.0004 0.0002 27 1 3.0096 -0.5550 -0.8644 28 1 3.0096 -0.4699 0.9135 29 1 1.5168 0.5707 3.1779 30 1 4.0493 -0.3860 -2.1472 31 1 3.4500 -0.2629 -3.8188 32 1 4.7372 0.8282 -3.2521 33 1 0.7093 1.4292 -3.7826 34 1 2.2542 1.9487 -6.3459 35 1 2.5952 0.5140 -5.3431 36 1 -0.0815 0.3868 -5.3772 37 1 0.9372 -0.3898 -6.6018 38 1 -1.0635 1.0196 -7.4306 39 1 0.5072 1.2864 -8.2071 40 1 -0.8828 3.3700 -7.5694 41 1 0.8327 3.3603 -7.1248 42 1 -1.0678 2.2810 -5.1129 43 1 -1.1134 4.0383 -5.4133 44 1 0.5532 3.8324 -3.7462 45 1 1.4904 3.9119 -5.2494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281545333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:46 Heat of formation + Delta-G solvation = -44.462985 kcal Electronic energy + Delta-G solvation = -24815.372443 eV Core-core repulsion = 21412.976944 eV Total energy + Delta-G solvation = -3402.395499 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15654 -40.09391 -37.74242 -36.96958 -34.22786 -33.29051 -33.05239 -32.66721 -31.26985 -28.22750 -27.04993 -25.69131 -25.34710 -24.28504 -21.78932 -20.95569 -20.12852 -19.70124 -18.63390 -18.17421 -17.47205 -17.07706 -16.49679 -16.27933 -15.86536 -15.73965 -15.42147 -14.96958 -14.71201 -14.41822 -14.24557 -14.08331 -13.95369 -13.62794 -13.45196 -13.10234 -13.04637 -12.91243 -12.79465 -12.64914 -12.47988 -12.17481 -12.11755 -11.87870 -11.50116 -11.39384 -11.22684 -11.20795 -11.11189 -11.02492 -10.73531 -10.58579 -10.06185 -9.80058 -8.29037 -6.00018 1.37504 1.41100 1.50549 1.81782 2.09308 2.30678 2.36503 2.53132 3.04585 3.29300 3.65294 3.79547 3.87824 3.90307 4.02054 4.05701 4.17048 4.21063 4.25675 4.33151 4.38305 4.44872 4.48457 4.59598 4.73172 4.79439 4.89169 4.93595 4.98585 5.02382 5.08983 5.19434 5.23867 5.27825 5.34541 5.35420 5.40074 5.41810 5.44393 5.47652 5.59566 6.01180 6.27515 6.50559 7.13047 7.14668 7.37267 7.95113 8.67331 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.004107 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.827743 B = 6816.799907 C = 6976.144993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.152 4.152 3 C 0.229 3.771 4 N -0.449 5.449 5 C -0.354 4.354 6 H 0.071 0.929 7 C 0.005 3.995 8 N -0.874 5.874 9 Si 0.986 3.014 10 H -0.282 1.282 11 H -0.270 1.270 12 H -0.265 1.265 13 C 0.439 3.561 14 O -0.619 6.619 15 C 0.090 3.910 16 H 0.082 0.918 17 C -0.161 4.161 18 O -0.383 6.383 19 C 0.088 3.912 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.103 4.103 25 C -0.124 4.124 26 H 0.232 0.768 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.272 0.728 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 -6.486 -15.440 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.153 4.153 3 C 0.107 3.893 4 N -0.168 5.168 5 C -0.481 4.481 6 H 0.089 0.911 7 C -0.198 4.198 8 N -0.511 5.511 9 Si 0.810 3.190 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.190 1.190 13 C 0.228 3.772 14 O -0.505 6.505 15 C 0.029 3.971 16 H 0.100 0.900 17 C -0.218 4.218 18 O -0.302 6.302 19 C 0.031 3.969 20 C -0.166 4.166 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.141 4.141 25 C -0.162 4.162 26 H 0.249 0.751 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.883 -5.889 -15.339 17.452 hybrid contribution 0.071 0.567 1.437 1.546 sum -5.812 -5.323 -13.902 15.980 Atomic orbital electron populations 1.25106 0.96290 1.00248 1.04762 1.23381 0.94928 1.00017 0.97000 1.18496 0.84820 0.83327 1.02660 1.43780 1.56464 1.11773 1.04829 1.19517 1.26364 1.17283 0.84949 0.91148 1.26012 0.94941 0.97139 1.01756 1.70089 1.19176 1.34297 1.27530 0.85111 0.78744 0.78068 0.77059 1.20805 1.19475 1.19011 1.21133 0.83627 0.86410 0.86012 1.90472 1.50132 1.22640 1.87210 1.21919 0.99973 0.89281 0.85955 0.89998 1.22309 0.98502 0.97824 1.03157 1.88029 1.47150 1.50521 1.44500 1.21422 0.86237 0.97262 0.92020 1.21855 0.99020 0.99583 0.96157 1.21308 0.96239 0.99138 0.98808 1.21911 1.00991 0.94070 0.98148 1.21368 1.01827 0.96980 0.95585 1.21210 0.94927 1.02510 0.95428 1.20638 0.98246 0.96959 1.00358 0.75125 0.88179 0.88875 0.91748 0.90178 0.88455 0.92290 0.92838 0.91090 0.90996 0.92329 0.90538 0.91159 0.91413 0.90822 0.92598 0.91127 0.90796 0.94303 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.60 19.25 74.32 1.43 -8.17 16 2 C -0.15 -6.60 10.06 31.12 0.31 -6.29 16 3 C 0.23 10.06 4.82 84.57 0.41 10.46 16 4 N -0.45 -23.61 2.59 -645.41 -1.67 -25.29 16 5 C -0.35 -20.42 9.27 84.04 0.78 -19.65 16 6 H 0.07 4.39 7.41 -2.91 -0.02 4.37 16 7 C 0.00 0.26 5.00 84.93 0.42 0.68 16 8 N -0.87 -45.62 9.30 21.66 0.20 -45.42 16 9 Si 0.99 42.71 29.58 68.60 2.03 44.74 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 13 C 0.44 23.09 6.84 87.66 0.60 23.69 16 14 O -0.62 -38.49 16.30 15.22 0.25 -38.24 16 15 C 0.09 3.59 2.39 29.85 0.07 3.66 16 16 H 0.08 3.10 5.50 -2.39 -0.01 3.09 16 17 C -0.16 -4.99 9.05 71.98 0.65 -4.34 16 18 O -0.38 -15.43 9.13 -130.69 -1.19 -16.62 16 19 C 0.09 2.63 2.14 28.74 0.06 2.69 16 20 C -0.13 -2.92 5.24 30.22 0.16 -2.77 16 21 C -0.12 -2.03 5.32 30.16 0.16 -1.87 16 22 C -0.11 -1.68 5.85 31.31 0.18 -1.49 16 23 C -0.12 -2.01 5.31 30.14 0.16 -1.85 16 24 C -0.10 -2.12 5.61 30.20 0.17 -1.95 16 25 C -0.12 -3.56 4.82 28.74 0.14 -3.42 16 26 H 0.23 7.00 7.80 -4.41 -0.03 6.96 16 27 H 0.10 3.55 4.82 -2.39 -0.01 3.54 16 28 H 0.09 4.32 6.68 -2.39 -0.02 4.31 16 29 H 0.27 13.49 8.31 -92.70 -0.77 12.72 16 30 H 0.08 2.32 5.87 -2.39 -0.01 2.31 16 31 H 0.10 2.29 6.43 -2.39 -0.02 2.28 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.61 6.48 -2.39 -0.02 1.59 16 34 H 0.07 1.61 6.97 -2.39 -0.02 1.59 16 35 H 0.07 1.61 6.15 -2.39 -0.01 1.60 16 36 H 0.06 1.06 6.63 -2.39 -0.02 1.05 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.03 6.62 -2.39 -0.02 1.01 16 42 H 0.07 1.39 6.98 -2.39 -0.02 1.37 16 43 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 1.86 7.46 -2.39 -0.02 1.84 16 Total: -1.00 -72.24 346.28 6.30 -65.94 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.98 Total: 25.49 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 5.71 Total: -10.61 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -1.47 Total: -70.70 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.94 Total: -54.86 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -72.24 6.30 -65.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281545333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.481 kcal (2) G-P(sol) polarization free energy of solvation -72.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds