Wall clock time and date at job start Tue Mar 31 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47204 * 2 1 4 4 C 1.42907 * 113.99856 * 179.97438 * 3 2 1 5 5 C 1.53785 * 113.61167 * 150.00597 * 4 3 2 6 6 C 1.53776 * 87.08084 * 89.20140 * 5 4 3 7 7 C 1.53002 * 113.61590 * 139.98123 * 6 5 4 8 8 N 1.46900 * 109.47475 * 177.51001 * 7 6 5 9 9 C 1.46898 * 110.99965 * 288.27445 * 8 7 6 10 10 C 1.50697 * 109.46837 * 169.99974 * 9 8 7 11 11 H 1.08000 * 120.00464 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99691 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00454 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99873 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46889 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47126 * 119.99731 * 14 12 10 17 17 H 1.48494 * 109.47031 * 239.99833 * 14 12 10 18 18 C 1.46898 * 110.99715 * 164.31807 * 8 7 6 19 19 C 1.50707 * 109.47157 * 288.30272 * 18 8 7 20 20 C 1.34510 * 125.78973 * 95.43585 * 19 18 8 21 21 C 1.41382 * 106.83994 * 179.97438 * 20 19 18 22 22 C 1.34510 * 106.84319 * 0.02562 * 21 20 19 23 23 O 1.34303 * 125.78887 * 275.40659 * 19 18 8 24 24 C 1.53782 * 87.17562 * 25.38810 * 6 5 4 25 25 H 1.09003 * 109.46894 * 299.99489 * 1 2 3 26 26 H 1.08999 * 109.47067 * 59.99530 * 1 2 3 27 27 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46894 * 240.00511 * 2 1 3 29 29 H 1.08995 * 109.47413 * 120.00801 * 2 1 3 30 30 H 1.08997 * 112.84760 * 18.81130 * 4 3 2 31 31 H 1.08998 * 113.61098 * 334.65234 * 5 4 3 32 32 H 1.08994 * 113.61505 * 203.75222 * 5 4 3 33 33 H 1.09004 * 113.61829 * 270.79784 * 6 5 4 34 34 H 1.09001 * 109.46793 * 57.50583 * 7 6 5 35 35 H 1.09000 * 109.46816 * 297.51696 * 7 6 5 36 36 H 1.08996 * 109.46911 * 289.99600 * 9 8 7 37 37 H 1.09001 * 109.47146 * 50.00226 * 9 8 7 38 38 H 0.96992 * 120.00692 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.46526 * 168.30609 * 18 8 7 40 40 H 1.08992 * 109.47125 * 48.30776 * 18 8 7 41 41 H 1.08004 * 126.57684 * 0.23959 * 20 19 18 42 42 H 1.08001 * 126.57381 * 179.97438 * 21 20 19 43 43 H 1.07997 * 125.78886 * 179.97438 * 22 21 20 44 44 H 1.09006 * 113.61147 * 89.15567 * 24 6 5 45 45 H 1.08998 * 113.61835 * 220.05802 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.9490 2.7251 -0.7038 6 6 3.8413 3.4320 0.6576 7 6 5.0041 4.3830 0.9481 8 7 4.7804 5.0507 2.2373 9 6 3.6961 6.0368 2.1383 10 6 3.3298 6.5206 3.5177 11 1 3.8501 6.1340 4.3816 12 6 2.3296 7.4562 3.6770 13 7 1.6956 7.9267 2.6253 14 14 1.8760 8.0566 5.3869 15 1 2.7319 7.3780 6.3930 16 1 2.0852 9.5245 5.4677 17 1 0.4501 7.7440 5.6591 18 6 6.0163 5.6746 2.7284 19 6 6.9749 4.6030 3.1801 20 6 7.9648 4.0707 2.4411 21 6 8.6097 3.1089 3.2522 22 6 7.9751 3.1106 4.4382 23 8 6.9861 4.0180 4.3889 24 6 4.0026 2.0461 1.3043 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9280 0.5455 -0.3230 31 1 3.2640 3.1179 -1.4552 32 1 4.9719 2.6338 -1.0687 33 1 2.8673 3.8871 0.8375 34 1 5.0678 5.1310 0.1577 35 1 5.9348 3.8171 0.9885 36 1 4.0268 6.8808 1.5332 37 1 2.8259 5.5744 1.6725 38 1 0.9923 8.5851 2.7373 39 1 5.7835 6.3308 3.5670 40 1 6.4727 6.2563 1.9276 41 1 8.2207 4.3314 1.4247 42 1 9.4502 2.4909 2.9728 43 1 8.2195 2.4882 5.2862 44 1 5.0404 1.7689 1.4895 45 1 3.3610 1.8917 2.1718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286589887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:06 Heat of formation + Delta-G solvation = -26.310526 kcal Electronic energy + Delta-G solvation = -24013.710933 eV Core-core repulsion = 20612.102584 eV Total energy + Delta-G solvation = -3401.608349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.35881 -40.63683 -38.52201 -36.83117 -34.73744 -33.75775 -31.97699 -31.44764 -29.70359 -27.95742 -26.58353 -25.80659 -24.11052 -23.70953 -22.54010 -22.07721 -21.09923 -20.31986 -18.62680 -18.10290 -17.52404 -17.10140 -16.63355 -16.55989 -16.31489 -16.13166 -15.74677 -15.26296 -14.70698 -14.64614 -14.08700 -14.07944 -13.88436 -13.61201 -13.52974 -13.40158 -13.27841 -13.14387 -13.01586 -12.69879 -12.58888 -12.37715 -12.23119 -12.12711 -11.91842 -11.52510 -11.33216 -11.23710 -10.93510 -10.70566 -10.61130 -10.33775 -9.32427 -8.99345 -8.21145 -6.30439 0.91828 1.37952 1.39101 1.52685 1.81068 2.27195 2.39303 2.70718 3.10988 3.28222 3.73977 3.78291 3.91371 3.93823 4.12313 4.20532 4.24043 4.27264 4.31868 4.40278 4.43430 4.50338 4.60699 4.67679 4.75347 4.76779 4.82487 4.92015 4.94633 5.02402 5.02922 5.08538 5.15777 5.19874 5.23790 5.26371 5.32345 5.40776 5.53382 5.64787 5.75577 6.06184 6.29820 6.38538 6.43133 6.64354 6.85417 7.38877 8.90016 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.008327 B = 0.005890 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.882691 B = 4752.894221 C = 7177.917004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.398 6.398 4 C 0.070 3.930 5 C -0.125 4.125 6 C -0.101 4.101 7 C 0.066 3.934 8 N -0.537 5.537 9 C 0.213 3.787 10 C -0.522 4.522 11 H 0.057 0.943 12 C 0.005 3.995 13 N -0.932 5.932 14 Si 0.964 3.036 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.279 1.279 18 C 0.133 3.867 19 C -0.005 4.005 20 C -0.215 4.215 21 C -0.215 4.215 22 C -0.054 4.054 23 O -0.197 6.197 24 C -0.136 4.136 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.089 0.911 36 H -0.035 1.035 37 H 0.009 0.991 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.158 0.842 42 H 0.175 0.825 43 H 0.232 0.768 44 H 0.098 0.902 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.967 -16.443 -4.827 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.318 6.318 4 C 0.013 3.987 5 C -0.163 4.163 6 C -0.120 4.120 7 C -0.061 4.061 8 N -0.261 5.261 9 C 0.087 3.913 10 C -0.560 4.560 11 H 0.075 0.925 12 C -0.193 4.193 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.205 1.205 18 C 0.006 3.994 19 C -0.056 4.056 20 C -0.234 4.234 21 C -0.234 4.234 22 C -0.121 4.121 23 O -0.093 6.093 24 C -0.173 4.173 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.107 0.893 36 H -0.017 1.017 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.176 0.824 42 H 0.192 0.808 43 H 0.249 0.751 44 H 0.117 0.883 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.348 -16.442 -4.307 19.398 hybrid contribution -0.297 1.242 0.185 1.291 sum 9.051 -15.199 -4.123 18.164 Atomic orbital electron populations 1.21784 0.93451 1.03398 1.02248 1.22727 0.96027 0.82851 1.00996 1.87925 1.20972 1.28221 1.94646 1.23096 0.81027 0.98448 0.96170 1.23236 1.02404 0.94946 0.95685 1.22341 0.97598 0.94827 0.97271 1.22176 0.98681 0.96218 0.89064 1.61923 1.05268 1.31428 1.27471 1.19354 0.88789 0.87494 0.95687 1.21468 1.18665 1.22459 0.93443 0.92458 1.25842 0.95971 0.96521 1.00983 1.70079 1.24852 1.31158 1.31174 0.85412 0.78053 0.78100 0.79552 1.19093 1.20031 1.20462 1.20315 0.88026 0.91405 0.99673 1.22431 0.99566 0.99534 0.84054 1.21795 0.98611 1.01178 1.01863 1.22076 1.04350 1.03002 0.93968 1.24797 0.89946 0.95148 1.02171 1.84063 1.47098 1.44011 1.34128 1.23356 1.01177 0.95697 0.97087 0.93432 0.92362 0.88551 0.91459 0.92920 0.88129 0.91591 0.86391 0.92960 0.96156 0.89323 1.01691 0.97251 0.92684 0.90812 0.91740 0.82434 0.80770 0.75145 0.88344 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.05 1.09 6.50 71.98 0.47 1.56 16 3 O -0.40 -12.15 10.27 -148.98 -1.53 -13.68 16 4 C 0.07 1.85 4.38 31.18 0.14 1.99 16 5 C -0.12 -3.38 7.48 31.12 0.23 -3.15 16 6 C -0.10 -3.65 3.66 -10.27 -0.04 -3.69 16 7 C 0.07 2.44 4.63 86.30 0.40 2.83 16 8 N -0.54 -24.04 4.40 -905.38 -3.99 -28.03 16 9 C 0.21 11.68 4.57 85.56 0.39 12.07 16 10 C -0.52 -30.66 8.29 25.60 0.21 -30.45 16 11 H 0.06 3.38 7.25 -2.91 -0.02 3.36 16 12 C 0.00 0.29 5.46 84.66 0.46 0.75 16 13 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 14 Si 0.96 45.90 29.54 68.60 2.03 47.92 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 18 C 0.13 5.41 5.35 85.56 0.46 5.87 16 19 C -0.01 -0.18 6.29 24.83 0.16 -0.03 16 20 C -0.21 -5.98 9.55 22.19 0.21 -5.76 16 21 C -0.22 -4.98 10.91 22.19 0.24 -4.74 16 22 C -0.05 -1.34 12.09 66.97 0.81 -0.53 16 23 O -0.20 -6.95 10.65 -2.50 -0.03 -6.98 16 24 C -0.14 -4.24 7.48 31.18 0.23 -4.01 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.96 7.87 -2.39 -0.02 1.94 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.12 2.46 8.10 -2.39 -0.02 2.44 16 33 H 0.05 2.39 6.52 -2.39 -0.02 2.38 16 34 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 35 H 0.09 2.80 5.94 -2.39 -0.01 2.78 16 36 H -0.03 -2.03 8.12 -2.39 -0.02 -2.05 16 37 H 0.01 0.57 6.35 -2.39 -0.02 0.55 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.07 3.37 6.59 -2.39 -0.02 3.35 16 40 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 41 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.23 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.10 2.72 7.93 -2.38 -0.02 2.70 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -71.79 366.64 2.83 -68.96 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.95 Total: 18.59 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 5.11 Total: -29.59 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.70 Total: -85.22 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.56 Total: -20.66 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.79 2.83 -68.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286589887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.649 kcal (2) G-P(sol) polarization free energy of solvation -71.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds