Wall clock time and date at job start Tue Mar 31 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00096 * 2 1 4 4 C 1.52996 * 112.85387 * 295.56713 * 3 2 1 5 5 C 1.52999 * 109.47125 * 288.66112 * 4 3 2 6 6 N 1.46904 * 109.47283 * 174.67004 * 5 4 3 7 7 C 1.46902 * 110.99890 * 190.00081 * 6 5 4 8 8 C 1.50701 * 109.46798 * 75.71993 * 7 6 5 9 9 H 1.08003 * 120.00561 * 5.06063 * 8 7 6 10 10 C 1.37876 * 119.99979 * 185.05469 * 8 7 6 11 11 N 1.31516 * 119.99858 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00422 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47057 * 90.00265 * 12 10 8 14 14 H 1.48501 * 109.47422 * 210.00529 * 12 10 8 15 15 H 1.48504 * 109.46699 * 330.00447 * 12 10 8 16 16 C 1.46901 * 110.99895 * 66.04858 * 6 5 4 17 17 C 1.50700 * 109.47071 * 195.94136 * 16 6 5 18 18 C 1.34514 * 125.79261 * 89.71586 * 17 16 6 19 19 C 1.41379 * 106.83899 * 179.88989 * 18 17 16 20 20 C 1.34518 * 106.84113 * 0.37362 * 19 18 17 21 21 O 1.34301 * 125.78277 * 270.02276 * 17 16 6 22 22 C 1.53782 * 113.68846 * 66.83562 * 3 2 1 23 23 C 1.53779 * 87.08429 * 89.12616 * 22 3 2 24 24 C 1.53781 * 87.08028 * 25.43455 * 23 22 3 25 25 H 1.09001 * 109.47041 * 185.65023 * 1 2 3 26 26 H 1.08996 * 109.46980 * 305.65414 * 1 2 3 27 27 H 1.09004 * 109.47164 * 65.65180 * 1 2 3 28 28 H 1.09002 * 109.47015 * 168.66333 * 4 3 2 29 29 H 1.09003 * 109.47221 * 48.66198 * 4 3 2 30 30 H 1.09000 * 109.47474 * 294.67431 * 5 4 3 31 31 H 1.08999 * 109.46845 * 54.67038 * 5 4 3 32 32 H 1.08997 * 109.46815 * 195.71731 * 7 6 5 33 33 H 1.08997 * 109.47364 * 315.72165 * 7 6 5 34 34 H 0.97004 * 120.00241 * 179.97438 * 11 10 8 35 35 H 1.09007 * 109.46706 * 315.93626 * 16 6 5 36 36 H 1.08994 * 109.47247 * 75.93499 * 16 6 5 37 37 H 1.07997 * 126.57823 * 0.02562 * 18 17 16 38 38 H 1.08004 * 126.58117 * 180.16409 * 19 18 17 39 39 H 1.08001 * 125.78914 * 179.75656 * 20 19 18 40 40 H 1.09000 * 113.61648 * 203.67670 * 22 3 2 41 41 H 1.09001 * 113.61443 * 334.57783 * 22 3 2 42 42 H 1.09002 * 113.61938 * 270.88537 * 23 22 3 43 43 H 1.08997 * 113.69674 * 139.99066 * 23 22 3 44 44 H 1.09000 * 113.61403 * 220.02333 * 24 23 22 45 45 H 1.08995 * 113.61836 * 89.11908 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6961 2.0957 -1.2718 5 6 2.4739 1.5006 -2.4473 6 7 2.0764 2.1762 -3.6897 7 6 2.6192 1.4803 -4.8641 8 6 1.8229 0.2261 -5.1172 9 1 0.9472 0.0130 -4.5221 10 6 2.2122 -0.6493 -6.1087 11 7 3.2788 -0.3901 -6.8332 12 14 1.2250 -2.2036 -6.4230 13 1 0.1688 -1.9242 -7.4288 14 1 2.1260 -3.2677 -6.9339 15 1 0.5951 -2.6546 -5.1560 16 6 2.4875 3.5864 -3.6769 17 6 1.7442 4.3361 -4.7524 18 6 0.5558 4.9490 -4.6063 19 6 0.2344 5.5231 -5.8576 20 6 1.2418 5.2196 -6.6959 21 8 2.1535 4.5006 -6.0209 22 6 1.7555 2.0952 1.2947 23 6 3.0461 1.4626 1.8416 24 6 3.5004 1.3163 0.3797 25 1 -0.3633 -1.0227 0.1012 26 1 -0.3633 0.5990 0.8350 27 1 -0.3634 0.4237 -0.9363 28 1 1.9870 3.1371 -1.1336 29 1 0.6272 2.0414 -1.4787 30 1 3.5425 1.6401 -2.2837 31 1 2.2544 0.4359 -2.5263 32 1 2.5554 2.1330 -5.7347 33 1 3.6614 1.2184 -4.6818 34 1 3.5530 -1.0062 -7.5305 35 1 2.2578 4.0229 -2.7048 36 1 3.5595 3.6541 -3.8614 37 1 -0.0378 4.9956 -3.7053 38 1 -0.6516 6.0928 -6.0959 39 1 1.3064 5.5055 -7.7353 40 1 1.8190 3.1757 1.1667 41 1 0.8568 1.7831 1.8269 42 1 2.8856 0.5100 2.3464 43 1 3.6594 2.1514 2.4225 44 1 4.0104 0.3754 0.1731 45 1 4.0411 2.1839 0.0016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292725076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:50 Heat of formation + Delta-G solvation = -23.048483 kcal Electronic energy + Delta-G solvation = -24415.580330 eV Core-core repulsion = 21014.113434 eV Total energy + Delta-G solvation = -3401.466896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.35970 -41.00217 -38.46427 -36.45604 -34.83779 -33.82078 -32.45921 -31.20263 -28.74196 -27.93628 -26.78923 -26.14945 -25.18595 -23.12030 -22.52001 -21.98279 -21.04567 -20.26324 -18.61270 -18.18217 -17.23500 -17.09422 -16.98669 -16.48958 -16.12241 -15.93918 -15.73736 -15.32613 -15.07829 -14.82168 -14.50336 -13.97971 -13.83552 -13.59576 -13.48604 -13.33320 -13.10557 -13.06719 -12.92572 -12.69356 -12.58804 -12.43945 -12.11595 -11.98920 -11.77771 -11.65389 -11.58451 -11.31792 -10.92142 -10.72119 -10.61162 -10.19574 -9.33036 -9.06823 -8.20455 -6.30332 0.90502 1.36411 1.38304 1.49597 1.81982 2.27913 2.38370 2.80885 3.11192 3.27341 3.64745 3.72189 3.87236 3.95336 4.03152 4.14719 4.25546 4.26878 4.39957 4.46124 4.47501 4.50735 4.60100 4.64497 4.76856 4.81909 4.88737 4.92413 4.97856 5.01211 5.07254 5.09462 5.11052 5.16984 5.22302 5.30900 5.33662 5.41188 5.48840 5.64464 5.76106 6.05969 6.27806 6.38989 6.42416 6.55343 6.84824 7.38423 8.89992 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.009514 B = 0.006094 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.343063 B = 4593.521160 C = 6668.071700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.081 3.919 4 C -0.117 4.117 5 C 0.079 3.921 6 N -0.536 5.536 7 C 0.210 3.790 8 C -0.515 4.515 9 H 0.057 0.943 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.964 3.036 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.128 3.872 17 C -0.017 4.017 18 C -0.203 4.203 19 C -0.219 4.219 20 C -0.060 4.060 21 O -0.206 6.206 22 C -0.151 4.151 23 C -0.126 4.126 24 C -0.133 4.133 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.004 0.996 33 H -0.038 1.038 34 H 0.263 0.737 35 H 0.129 0.871 36 H 0.030 0.970 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.227 0.773 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 10.287 14.464 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C 0.041 3.959 4 C -0.155 4.155 5 C -0.049 4.049 6 N -0.260 5.260 7 C 0.083 3.917 8 C -0.554 4.554 9 H 0.075 0.925 10 C -0.196 4.196 11 N -0.575 5.575 12 Si 0.789 3.211 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.190 1.190 16 C 0.001 3.999 17 C -0.068 4.068 18 C -0.223 4.223 19 C -0.238 4.238 20 C -0.127 4.127 21 O -0.102 6.102 22 C -0.188 4.188 23 C -0.163 4.163 24 C -0.170 4.170 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.022 0.978 33 H -0.020 1.020 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.048 0.952 37 H 0.181 0.819 38 H 0.192 0.808 39 H 0.243 0.757 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.901 9.908 14.190 17.988 hybrid contribution 0.380 -0.848 -0.945 1.326 sum -4.520 9.061 13.245 16.672 Atomic orbital electron populations 1.22830 0.80328 1.03251 1.00557 1.87877 1.20873 1.26997 1.94876 1.22718 0.95721 0.83702 0.93738 1.21996 1.00929 0.99721 0.92855 1.21793 0.96221 0.98396 0.88481 1.62106 1.60160 1.00486 1.03271 1.19380 0.91483 0.92987 0.87818 1.21391 1.11364 1.05518 1.17108 0.92507 1.25883 0.96270 1.01749 0.95730 1.70097 1.26265 1.38635 1.22551 0.85455 0.78419 0.78563 0.78662 1.19807 1.20531 1.18981 1.20656 0.95402 0.88810 0.95049 1.22606 0.97974 1.02436 0.83743 1.21771 0.96253 1.03542 1.00749 1.22132 1.01919 1.06471 0.93297 1.24717 0.89903 0.98304 0.99737 1.84063 1.45673 1.58196 1.22313 1.23515 0.99026 1.00855 0.95408 1.22713 0.97038 1.01281 0.95290 1.23076 0.93913 1.02601 0.97415 0.89153 0.91931 0.94689 0.89064 0.91437 0.95998 0.93074 0.97778 1.01989 0.92778 0.85290 0.95178 0.81875 0.80818 0.75681 0.87493 0.90513 0.90565 0.89457 0.92445 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.55 113.37 1.20 1.85 16 2 O -0.39 -11.81 10.46 -148.98 -1.56 -13.37 16 3 C 0.08 2.09 0.72 -10.27 -0.01 2.08 16 4 C -0.12 -3.33 4.55 30.59 0.14 -3.19 16 5 C 0.08 3.06 4.48 86.30 0.39 3.45 16 6 N -0.54 -23.63 4.37 -905.35 -3.96 -27.58 16 7 C 0.21 11.76 4.59 85.56 0.39 12.16 16 8 C -0.52 -30.81 8.56 25.60 0.22 -30.59 16 9 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 10 C 0.00 0.08 5.46 84.65 0.46 0.54 16 11 N -0.93 -58.70 13.29 21.45 0.28 -58.41 16 12 Si 0.96 46.44 29.54 68.60 2.03 48.46 16 13 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 16 C 0.13 4.69 5.37 85.56 0.46 5.15 16 17 C -0.02 -0.67 6.13 24.83 0.15 -0.51 16 18 C -0.20 -6.55 10.81 22.19 0.24 -6.31 16 19 C -0.22 -6.37 10.91 22.19 0.24 -6.13 16 20 C -0.06 -1.89 12.09 66.97 0.81 -1.08 16 21 O -0.21 -8.43 9.79 -2.48 -0.02 -8.45 16 22 C -0.15 -2.75 7.18 31.12 0.22 -2.53 16 23 C -0.13 -2.32 8.02 31.12 0.25 -2.07 16 24 C -0.13 -3.14 6.61 31.12 0.21 -2.93 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 1.21 6.63 -2.39 -0.02 1.19 16 27 H 0.03 0.96 6.85 -2.38 -0.02 0.94 16 28 H 0.09 2.09 6.31 -2.39 -0.02 2.08 16 29 H 0.07 2.03 6.64 -2.39 -0.02 2.01 16 30 H 0.02 0.84 7.62 -2.39 -0.02 0.82 16 31 H 0.05 2.38 7.36 -2.39 -0.02 2.36 16 32 H 0.00 0.26 6.45 -2.39 -0.02 0.24 16 33 H -0.04 -2.31 8.00 -2.39 -0.02 -2.33 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.13 3.60 6.03 -2.38 -0.01 3.59 16 36 H 0.03 1.15 8.05 -2.39 -0.02 1.13 16 37 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.23 5.18 8.06 -2.91 -0.02 5.15 16 40 H 0.11 1.57 7.96 -2.39 -0.02 1.55 16 41 H 0.08 1.31 6.78 -2.39 -0.02 1.29 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.10 2.17 8.10 -2.39 -0.02 2.15 16 Total: -1.00 -73.95 360.41 3.10 -70.85 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.96 Total: 18.62 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 5.37 Total: -30.12 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.67 Total: -85.99 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.58 Total: -21.82 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -73.95 3.10 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292725076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.802 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds