Wall clock time and date at job start Tue Mar 31 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47620 * 2 1 4 4 C 1.42901 * 114.00186 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47205 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47267 * 59.99586 * 5 4 3 7 7 C 1.53003 * 109.46700 * 299.99815 * 5 4 3 8 8 N 1.46894 * 109.47172 * 179.97438 * 5 4 3 9 9 C 1.46901 * 110.99955 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.46941 * 180.02562 * 9 8 5 11 11 C 1.38305 * 119.93408 * 89.99969 * 10 9 8 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 1.08998 * 109.46981 * 59.99686 * 1 2 3 26 26 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47114 * 300.00349 * 1 2 3 28 28 H 1.09003 * 109.46746 * 239.99470 * 2 1 3 29 29 H 1.09007 * 109.47084 * 120.00098 * 2 1 3 30 30 H 1.09002 * 109.47437 * 59.99350 * 4 3 2 31 31 H 1.09003 * 109.46605 * 299.99821 * 4 3 2 32 32 H 1.08997 * 109.47561 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47393 * 300.00416 * 6 5 4 34 34 H 1.09003 * 109.47167 * 59.99859 * 6 5 4 35 35 H 1.08996 * 109.47059 * 299.99650 * 7 5 4 36 36 H 1.08995 * 109.47270 * 60.00024 * 7 5 4 37 37 H 1.09000 * 109.46826 * 180.02562 * 7 5 4 38 38 H 1.00905 * 110.99775 * 56.04510 * 8 5 4 39 39 H 1.08986 * 109.47081 * 59.99957 * 9 8 5 40 40 H 1.09005 * 109.47052 * 299.99766 * 9 8 5 41 41 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 42 42 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 43 43 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 44 44 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 45 45 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8256 2.9382 0.0001 6 6 3.2608 3.6163 1.2499 7 6 3.2597 3.6176 -1.2485 8 7 5.2899 3.0541 0.0001 9 6 5.7065 4.4628 0.0002 10 6 7.2114 4.5416 -0.0004 11 6 7.9001 4.5778 -1.1993 12 6 9.2792 4.6505 -1.2031 13 6 9.9745 4.6867 -0.0015 14 8 11.3301 4.7587 -0.0020 15 6 11.9348 4.9076 -1.1979 16 1 11.3500 4.8824 -2.1055 17 6 13.3074 5.0932 -1.2624 18 7 13.8972 5.2391 -2.4293 19 14 14.3187 5.1376 0.3074 20 1 14.7704 3.7637 0.6443 21 1 15.5018 6.0130 0.1095 22 1 13.4880 5.6714 1.4165 23 6 9.2805 4.6437 1.2007 24 6 7.9011 4.5768 1.1979 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8334 0.9765 -0.8907 31 1 3.8340 0.9763 0.8892 32 1 3.5415 4.6695 1.2502 33 1 2.1741 3.5303 1.2504 34 1 3.6638 3.1322 2.1395 35 1 3.6621 3.1346 -2.1389 36 1 2.1731 3.5316 -1.2481 37 1 3.5412 4.6707 -1.2483 38 1 5.6919 2.5585 -0.7815 39 1 5.3168 4.9569 0.8901 40 1 5.3168 4.9570 -0.8898 41 1 7.3588 4.5501 -2.1334 42 1 9.8163 4.6792 -2.1396 43 1 14.8573 5.3693 -2.4744 44 1 9.8186 4.6672 2.1367 45 1 7.3605 4.5479 2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293413088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:43 Heat of formation + Delta-G solvation = -54.686914 kcal Electronic energy + Delta-G solvation = -22960.717686 eV Core-core repulsion = 19557.878845 eV Total energy + Delta-G solvation = -3402.838842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45459 -38.94006 -37.44913 -36.34008 -32.63679 -32.17126 -31.02268 -30.23114 -28.73500 -27.40489 -26.76005 -25.45064 -23.77436 -23.03439 -22.04721 -20.39757 -19.34514 -17.88914 -17.32223 -16.91951 -16.37604 -16.13349 -15.10880 -14.74746 -14.61099 -14.42726 -14.12004 -13.89228 -13.71068 -13.55936 -13.18130 -12.96232 -12.79226 -12.72161 -12.61606 -12.27918 -12.16291 -11.96036 -11.67395 -11.60132 -11.46103 -11.24206 -11.13933 -10.81665 -10.72008 -10.65855 -10.52143 -10.14809 -9.81804 -9.38536 -8.87381 -8.40050 -8.23595 -7.31413 -6.42026 -4.08613 2.14288 2.18285 3.22275 3.25247 3.30575 3.40265 4.23522 4.29345 4.57175 4.67892 4.70527 4.75713 4.86534 4.91384 5.01163 5.07501 5.11469 5.25943 5.31130 5.34950 5.39960 5.46627 5.57150 5.60727 5.63564 5.69871 5.76371 5.77966 5.79109 5.87898 5.92901 6.12665 6.13874 6.21165 6.35814 6.58852 6.79940 6.93244 7.00164 7.11723 7.26298 7.29317 7.44016 7.62354 7.79977 8.03867 8.93321 9.56145 10.65610 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035667 B = 0.002456 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.857941 B =11396.855803 C =11486.447682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.386 6.386 4 C 0.076 3.924 5 C 0.112 3.888 6 C -0.134 4.134 7 C -0.178 4.178 8 N -0.673 5.673 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.067 4.067 12 C -0.222 4.222 13 C 0.161 3.839 14 O -0.218 6.218 15 C -0.389 4.389 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.880 5.880 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.194 4.194 24 C -0.054 4.054 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.341 0.659 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.116 0.884 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.096 -6.730 4.780 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.304 6.304 4 C -0.001 4.001 5 C 0.021 3.979 6 C -0.192 4.192 7 C -0.237 4.237 8 N -0.306 5.306 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.086 4.086 12 C -0.241 4.241 13 C 0.109 3.891 14 O -0.123 6.123 15 C -0.465 4.465 16 H 0.123 0.877 17 C -0.141 4.141 18 N -0.518 5.518 19 Si 0.732 3.268 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.213 4.213 24 C -0.073 4.073 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.791 -6.611 5.527 24.366 hybrid contribution 0.626 -0.038 -0.658 0.909 sum -22.165 -6.649 4.869 23.648 Atomic orbital electron populations 1.21734 0.93840 1.02137 1.03058 1.22432 0.95430 0.83974 1.00065 1.87826 1.21044 1.26111 1.95455 1.22375 0.80857 0.96256 1.00609 1.20812 0.88149 0.93352 0.95635 1.21806 1.00678 1.00092 0.96608 1.22479 1.02402 1.01019 0.97768 1.60657 1.05996 1.13771 1.50153 1.20711 0.92004 0.88122 1.00500 1.19202 0.93789 1.11379 0.93308 1.20649 0.93641 0.97855 0.96470 1.21233 0.94191 1.09994 0.98666 1.19148 0.83586 0.92954 0.93413 1.83572 1.14819 1.80091 1.33809 1.20766 0.92057 1.50787 0.82851 0.87659 1.24477 0.95868 0.95575 0.98152 1.69649 1.11409 1.47075 1.23654 0.86170 0.79174 0.78615 0.82886 1.19884 1.20833 1.18346 1.20224 0.93658 1.11500 0.95953 1.20471 0.92680 0.97278 0.96845 0.91938 0.91219 0.91881 0.93562 0.93436 0.93578 0.92402 0.92555 0.91810 0.92092 0.92980 0.91453 0.92232 0.84024 0.90627 0.94757 0.87674 0.85057 0.91066 0.86595 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.15 0.38 -0.56 16 2 C 0.06 0.45 6.66 37.15 0.25 0.69 16 3 O -0.39 -3.86 8.99 -35.23 -0.32 -4.18 16 4 C 0.08 0.76 5.07 37.16 0.19 0.94 16 5 C 0.11 1.16 0.80 -131.60 -0.10 1.06 16 6 C -0.13 -1.37 8.09 37.16 0.30 -1.07 16 7 C -0.18 -1.78 8.09 37.16 0.30 -1.48 16 8 N -0.67 -8.03 6.08 -101.23 -0.62 -8.65 16 9 C 0.11 1.47 5.02 -4.98 -0.02 1.44 16 10 C -0.18 -2.83 5.40 -104.57 -0.56 -3.40 16 11 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 12 C -0.22 -4.74 9.17 -39.40 -0.36 -5.10 16 13 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 14 O -0.22 -5.77 8.59 0.05 0.00 -5.77 16 15 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 16 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 18 N -0.88 -25.42 13.96 55.48 0.77 -24.65 16 19 Si 0.91 21.73 28.62 -169.99 -4.86 16.86 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.26 -6.25 7.11 56.52 0.40 -5.84 16 23 C -0.19 -3.85 9.99 -39.39 -0.39 -4.25 16 24 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 37 H 0.06 0.60 6.40 -51.93 -0.33 0.27 16 38 H 0.34 4.09 8.71 -39.29 -0.34 3.75 16 39 H 0.08 0.93 6.25 -51.94 -0.32 0.61 16 40 H 0.03 0.42 6.25 -51.93 -0.32 0.10 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.96 5.64 -52.49 -0.30 2.67 16 43 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -29.08 363.80 -7.63 -36.71 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.24 Total: 4.32 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -0.85 Total: -20.14 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.16 Total: -33.30 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.32 Total: -9.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.08 -7.63 -36.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293413088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.975 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds