Wall clock time and date at job start Tue Mar 31 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47620 * 2 1 4 4 C 1.42901 * 114.00186 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47205 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47267 * 59.99586 * 5 4 3 7 7 C 1.53003 * 109.46700 * 299.99815 * 5 4 3 8 8 N 1.46894 * 109.47172 * 179.97438 * 5 4 3 9 9 C 1.46901 * 110.99955 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.46941 * 180.02562 * 9 8 5 11 11 C 1.38305 * 119.93408 * 89.99969 * 10 9 8 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 1.08998 * 109.46981 * 59.99686 * 1 2 3 26 26 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47114 * 300.00349 * 1 2 3 28 28 H 1.09003 * 109.46746 * 239.99470 * 2 1 3 29 29 H 1.09007 * 109.47084 * 120.00098 * 2 1 3 30 30 H 1.09002 * 109.47437 * 59.99350 * 4 3 2 31 31 H 1.09003 * 109.46605 * 299.99821 * 4 3 2 32 32 H 1.08997 * 109.47561 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47393 * 300.00416 * 6 5 4 34 34 H 1.09003 * 109.47167 * 59.99859 * 6 5 4 35 35 H 1.08996 * 109.47059 * 299.99650 * 7 5 4 36 36 H 1.08995 * 109.47270 * 60.00024 * 7 5 4 37 37 H 1.09000 * 109.46826 * 180.02562 * 7 5 4 38 38 H 1.00905 * 110.99775 * 56.04510 * 8 5 4 39 39 H 1.08986 * 109.47081 * 59.99957 * 9 8 5 40 40 H 1.09005 * 109.47052 * 299.99766 * 9 8 5 41 41 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 42 42 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 43 43 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 44 44 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 45 45 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8256 2.9382 0.0001 6 6 3.2608 3.6163 1.2499 7 6 3.2597 3.6176 -1.2485 8 7 5.2899 3.0541 0.0001 9 6 5.7065 4.4628 0.0002 10 6 7.2114 4.5416 -0.0004 11 6 7.9001 4.5778 -1.1993 12 6 9.2792 4.6505 -1.2031 13 6 9.9745 4.6867 -0.0015 14 8 11.3301 4.7587 -0.0020 15 6 11.9348 4.9076 -1.1979 16 1 11.3500 4.8824 -2.1055 17 6 13.3074 5.0932 -1.2624 18 7 13.8972 5.2391 -2.4293 19 14 14.3187 5.1376 0.3074 20 1 14.7704 3.7637 0.6443 21 1 15.5018 6.0130 0.1095 22 1 13.4880 5.6714 1.4165 23 6 9.2805 4.6437 1.2007 24 6 7.9011 4.5768 1.1979 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8334 0.9765 -0.8907 31 1 3.8340 0.9763 0.8892 32 1 3.5415 4.6695 1.2502 33 1 2.1741 3.5303 1.2504 34 1 3.6638 3.1322 2.1395 35 1 3.6621 3.1346 -2.1389 36 1 2.1731 3.5316 -1.2481 37 1 3.5412 4.6707 -1.2483 38 1 5.6919 2.5585 -0.7815 39 1 5.3168 4.9569 0.8901 40 1 5.3168 4.9570 -0.8898 41 1 7.3588 4.5501 -2.1334 42 1 9.8163 4.6792 -2.1396 43 1 14.8573 5.3693 -2.4744 44 1 9.8186 4.6672 2.1367 45 1 7.3605 4.5479 2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293413088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:42 Heat of formation + Delta-G solvation = -72.470860 kcal Electronic energy + Delta-G solvation = -22961.488856 eV Core-core repulsion = 19557.878845 eV Total energy + Delta-G solvation = -3403.610011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.93669 -39.98202 -38.67647 -37.55262 -34.50549 -33.36603 -31.85190 -31.74056 -29.98232 -28.20709 -27.77036 -27.15294 -25.05227 -23.65518 -23.60655 -21.89913 -20.19510 -19.80963 -19.10611 -17.63261 -17.29377 -17.00104 -16.64727 -16.16424 -15.78725 -15.55753 -15.50950 -15.36173 -15.04297 -14.78571 -14.38260 -14.16066 -14.07049 -13.87867 -13.79715 -13.40682 -13.21240 -13.07773 -12.80161 -12.57918 -12.46379 -12.40125 -12.24761 -12.10181 -12.01224 -11.93653 -11.84320 -11.44438 -11.25435 -10.89773 -10.51369 -9.78335 -9.35832 -8.96204 -8.49854 -6.22222 0.59352 0.63535 1.31559 1.35945 1.51834 2.28190 2.51961 2.79822 3.06110 3.18268 3.56604 3.87868 3.91135 4.04323 4.09774 4.18920 4.20708 4.23315 4.35442 4.46211 4.52160 4.57194 4.60558 4.65021 4.72350 4.77838 4.85416 4.86778 4.94592 5.00586 5.04468 5.06809 5.11491 5.27833 5.28613 5.31247 5.38672 5.42011 5.59827 5.77713 5.82723 5.92078 6.11417 6.26167 6.28007 6.47045 6.84601 7.59775 8.61703 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035667 B = 0.002456 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.857941 B =11396.855803 C =11486.447682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.398 6.398 4 C 0.078 3.922 5 C 0.113 3.887 6 C -0.131 4.131 7 C -0.173 4.173 8 N -0.677 5.677 9 C 0.119 3.881 10 C -0.148 4.148 11 C -0.066 4.066 12 C -0.237 4.237 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.398 4.398 16 H 0.081 0.919 17 C 0.008 3.992 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.193 4.193 24 C -0.048 4.048 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.342 0.658 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.284 0.716 44 H 0.126 0.874 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.741 -7.149 6.528 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.317 6.317 4 C 0.001 3.999 5 C 0.023 3.977 6 C -0.189 4.189 7 C -0.232 4.232 8 N -0.310 5.310 9 C -0.009 4.009 10 C -0.149 4.149 11 C -0.085 4.085 12 C -0.257 4.257 13 C 0.070 3.930 14 O -0.154 6.154 15 C -0.474 4.474 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.187 1.187 23 C -0.212 4.212 24 C -0.067 4.067 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.160 0.840 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.150 0.850 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.144 0.856 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -25.492 -7.041 7.281 27.430 hybrid contribution 1.030 0.027 -1.184 1.570 sum -24.461 -7.013 6.096 26.167 Atomic orbital electron populations 1.21742 0.92818 1.03229 1.02697 1.22621 0.96304 0.83095 1.00574 1.87808 1.20871 1.27517 1.95530 1.22307 0.81104 0.95874 1.00583 1.20818 0.87027 0.93873 0.96025 1.21778 1.00750 1.00175 0.96183 1.22424 1.02321 1.00952 0.97488 1.60598 1.07142 1.12888 1.50327 1.20702 0.89137 0.89136 1.01936 1.19658 0.95858 1.07054 0.92306 1.20920 0.92066 0.96894 0.98591 1.21243 0.95915 1.11148 0.97350 1.19697 0.82852 0.95130 0.95291 1.83513 1.16586 1.82868 1.32435 1.20703 0.92484 1.51137 0.83109 0.90177 1.25296 0.96854 0.95484 1.01380 1.69732 1.11988 1.49218 1.25500 0.85203 0.77726 0.79057 0.78645 1.19087 1.19252 1.18721 1.20527 0.94954 1.10604 0.95161 1.20907 0.91531 0.95505 0.98741 0.92309 0.89449 0.92186 0.93053 0.92922 0.93339 0.92731 0.92138 0.91693 0.92452 0.92980 0.91538 0.92086 0.84012 0.89136 0.93547 0.85014 0.87575 0.90607 0.85556 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.68 6.66 71.98 0.48 1.16 16 3 O -0.40 -7.14 8.99 -148.98 -1.34 -8.48 16 4 C 0.08 1.38 5.07 71.98 0.36 1.74 16 5 C 0.11 2.02 0.80 3.53 0.00 2.02 16 6 C -0.13 -2.26 8.09 71.98 0.58 -1.68 16 7 C -0.17 -2.96 8.09 71.98 0.58 -2.38 16 8 N -0.68 -13.80 6.08 -474.17 -2.88 -16.68 16 9 C 0.12 2.56 5.02 85.56 0.43 2.99 16 10 C -0.15 -4.29 5.40 -19.83 -0.11 -4.39 16 11 C -0.07 -2.23 9.69 22.25 0.22 -2.02 16 12 C -0.24 -10.41 9.17 22.39 0.21 -10.20 16 13 C 0.12 5.62 6.65 22.58 0.15 5.77 16 14 O -0.25 -13.53 8.59 -22.72 -0.20 -13.73 16 15 C -0.40 -23.66 9.95 67.92 0.68 -22.99 16 16 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 17 C 0.01 0.47 5.49 84.83 0.47 0.94 16 18 N -0.92 -55.53 13.96 21.61 0.30 -55.23 16 19 Si 0.97 45.85 28.62 68.60 1.96 47.81 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.19 -7.42 9.99 22.39 0.22 -7.20 16 24 C -0.05 -1.48 9.69 22.25 0.22 -1.27 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.98 6.40 -2.39 -0.02 0.97 16 33 H 0.06 1.11 7.68 -2.38 -0.02 1.09 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.17 7.68 -2.39 -0.02 1.15 16 37 H 0.06 1.02 6.40 -2.39 -0.02 1.01 16 38 H 0.34 7.12 8.71 -89.69 -0.78 6.33 16 39 H 0.09 1.78 6.25 -2.39 -0.01 1.76 16 40 H 0.05 0.94 6.25 -2.38 -0.01 0.93 16 41 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 42 H 0.11 5.15 5.64 -2.91 -0.02 5.13 16 43 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 44 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 45 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -65.28 363.80 3.27 -62.02 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.19 Total: 22.63 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 5.23 Total: -38.34 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.58 Total: -71.91 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.54 Total: -22.20 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Total: -65.28 3.27 -62.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293413088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.454 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds