Wall clock time and date at job start Tue Mar 31 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47286 * 2 1 4 4 C 1.36932 * 120.00040 * 264.23862 * 3 2 1 5 5 H 1.07997 * 119.99623 * 187.55973 * 4 3 2 6 6 C 1.38807 * 120.00062 * 7.55097 * 4 3 2 7 7 N 1.31617 * 120.00398 * 23.08092 * 6 4 3 8 8 Si 1.86803 * 119.99852 * 203.08352 * 6 4 3 9 9 H 1.48497 * 109.47284 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47186 * 120.00262 * 8 6 4 11 11 H 1.48503 * 109.46999 * 240.00015 * 8 6 4 12 12 C 1.46507 * 119.99673 * 84.23288 * 3 2 1 13 13 C 1.52998 * 109.46810 * 96.21924 * 12 3 2 14 14 H 1.08996 * 109.47180 * 58.68430 * 13 12 3 15 15 O 1.42908 * 109.46733 * 298.68628 * 13 12 3 16 16 C 1.53000 * 109.46790 * 178.69123 * 13 12 3 17 17 O 1.42908 * 109.46870 * 184.99663 * 16 13 12 18 18 C 1.35899 * 116.99637 * 179.97438 * 17 16 13 19 19 C 1.38731 * 120.05621 * 269.72311 * 18 17 16 20 20 C 1.50703 * 120.02800 * 0.02562 * 19 18 17 21 21 C 1.38146 * 119.94125 * 179.70276 * 19 18 17 22 22 C 1.38262 * 120.05860 * 0.60345 * 21 19 18 23 23 C 1.38272 * 120.10857 * 359.67197 * 22 21 19 24 24 C 1.38147 * 120.05535 * 0.02801 * 23 22 21 25 25 C 1.50694 * 120.02662 * 179.97438 * 24 23 22 26 26 H 1.09001 * 109.47125 * 294.86930 * 1 2 3 27 27 H 1.09006 * 109.46776 * 54.86726 * 1 2 3 28 28 H 1.08997 * 109.47275 * 174.86470 * 1 2 3 29 29 H 1.09000 * 109.47187 * 240.00047 * 2 1 3 30 30 H 1.09002 * 109.46624 * 120.00106 * 2 1 3 31 31 H 0.96996 * 120.00701 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46503 * 216.21461 * 12 3 2 33 33 H 1.08992 * 109.47180 * 336.21550 * 12 3 2 34 34 H 0.96700 * 113.99803 * 299.99773 * 15 13 12 35 35 H 1.08995 * 109.46979 * 304.99103 * 16 13 12 36 36 H 1.08995 * 109.47695 * 64.99405 * 16 13 12 37 37 H 1.08993 * 109.46898 * 90.00132 * 20 19 18 38 38 H 1.09003 * 109.46783 * 209.99849 * 20 19 18 39 39 H 1.08996 * 109.46896 * 329.99658 * 20 19 18 40 40 H 1.08004 * 119.96818 * 180.27420 * 21 19 18 41 41 H 1.07996 * 119.95007 * 179.70271 * 22 21 19 42 42 H 1.08002 * 119.96926 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.47324 * 270.02447 * 25 24 23 44 44 H 1.09007 * 109.47242 * 30.02071 * 25 24 23 45 45 H 1.09003 * 109.47142 * 150.01977 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3589 1.9870 -1.1799 5 1 2.8324 2.9576 -1.1715 6 6 2.0956 1.3536 -2.3866 7 7 1.1536 0.4371 -2.4571 8 14 3.0785 1.8018 -3.9106 9 1 4.0704 2.8527 -3.5687 10 1 3.7862 0.5977 -4.4150 11 1 2.1596 2.3117 -4.9599 12 6 2.1424 2.1143 1.2624 13 6 3.5832 2.0188 1.7682 14 1 4.2593 2.4304 1.0189 15 8 3.9142 0.6493 2.0074 16 6 3.7204 2.8115 3.0696 17 8 5.0892 2.8196 3.4803 18 6 5.3853 3.4866 4.6267 19 6 5.7259 4.8306 4.5805 20 6 5.7675 5.5530 3.2585 21 6 6.0205 5.5078 5.7479 22 6 5.9883 4.8442 6.9605 23 6 5.6546 3.5032 7.0086 24 6 5.3532 2.8230 5.8446 25 6 4.9902 1.3614 5.8978 26 1 -0.3633 0.4322 0.9324 27 1 -0.3633 0.5914 -0.8405 28 1 -0.3634 -1.0235 -0.0920 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.9694 -0.0053 -3.3004 32 1 1.8822 3.1605 1.1019 33 1 1.4684 1.6815 2.0015 34 1 3.3517 0.2179 2.6651 35 1 3.3834 3.8354 2.9085 36 1 3.1113 2.3462 3.8445 37 1 4.7878 5.9817 3.0479 38 1 6.5106 6.3492 3.3028 39 1 6.0342 4.8506 2.4689 40 1 6.2815 6.5553 5.7129 41 1 6.2236 5.3742 7.8716 42 1 5.6297 2.9872 7.9570 43 1 5.8933 0.7590 5.8006 44 1 4.5074 1.1413 6.8500 45 1 4.3072 1.1267 5.0813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299506351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:31 Heat of formation + Delta-G solvation = -44.875559 kcal Electronic energy + Delta-G solvation = -24108.596632 eV Core-core repulsion = 20706.183242 eV Total energy + Delta-G solvation = -3402.413389 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25140 -37.94900 -36.62640 -35.04333 -33.66471 -31.55092 -31.18051 -30.20284 -28.71513 -27.05870 -26.72710 -25.27813 -23.23740 -21.81769 -21.35079 -20.96178 -20.14414 -17.66843 -16.86596 -16.52997 -16.06151 -15.44969 -15.09472 -14.82355 -14.57939 -14.17537 -13.73119 -13.56230 -13.37263 -13.19206 -13.08085 -12.95221 -12.73185 -12.68860 -11.98274 -11.90789 -11.75950 -11.63988 -11.37162 -11.28422 -11.21500 -10.80535 -10.67268 -10.46354 -10.31750 -9.94590 -9.82083 -9.71095 -9.60585 -9.27901 -8.70015 -8.54632 -8.28712 -6.81677 -5.73027 -3.03887 1.12564 1.21442 3.34620 3.42402 3.50946 3.52414 3.90401 4.53323 4.67255 4.71727 4.83393 4.93260 5.11390 5.16154 5.28638 5.32331 5.40081 5.43088 5.49422 5.57142 5.58074 5.62517 5.70728 5.71908 5.78320 5.92953 6.01859 6.05898 6.19548 6.32956 6.35600 6.50161 6.50790 6.61310 6.67986 6.75105 6.94994 7.06418 7.18621 7.65650 7.70337 7.86818 8.08487 8.25015 8.41288 9.27192 9.90013 10.33825 11.30637 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003661 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.731787 B = 7647.092832 C = 8445.648418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 N -0.586 5.586 4 C -0.248 4.248 5 H 0.072 0.928 6 C -0.002 4.002 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.294 1.294 12 C 0.128 3.872 13 C 0.088 3.912 14 H 0.103 0.897 15 O -0.541 6.541 16 C 0.038 3.962 17 O -0.321 6.321 18 C 0.098 3.902 19 C -0.100 4.100 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.101 4.101 25 C -0.110 4.110 26 H 0.005 0.995 27 H 0.082 0.918 28 H 0.022 0.978 29 H 0.093 0.907 30 H 0.005 0.995 31 H 0.250 0.750 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.358 0.642 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 6.551 18.212 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.043 3.957 3 N -0.307 5.307 4 C -0.377 4.377 5 H 0.090 0.910 6 C -0.199 4.199 7 N -0.543 5.543 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.221 1.221 12 C -0.001 4.001 13 C 0.026 3.974 14 H 0.121 0.879 15 O -0.344 6.344 16 C -0.037 4.037 17 O -0.238 6.238 18 C 0.054 3.946 19 C -0.101 4.101 20 C -0.172 4.172 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.101 4.101 25 C -0.167 4.167 26 H 0.024 0.976 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.111 0.889 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.203 0.797 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.616 6.480 17.450 19.755 hybrid contribution -0.094 0.362 -0.174 0.413 sum 6.522 6.842 17.276 19.693 Atomic orbital electron populations 1.22245 0.99691 0.98891 0.99477 1.20864 0.91730 0.84318 0.98826 1.43953 1.75304 1.10791 1.00602 1.19264 1.32389 1.02419 0.83630 0.90991 1.24688 0.98293 0.99570 0.97343 1.70189 1.29365 1.30058 1.24701 0.86316 0.80189 0.77609 0.83289 1.20515 1.21628 1.22108 1.21195 0.92157 0.96957 0.89758 1.22999 1.00815 0.81171 0.92451 0.87868 1.86679 1.59923 1.24059 1.63758 1.23717 0.81004 1.00878 0.98112 1.86142 1.26804 1.72933 1.37954 1.18491 1.00120 0.89962 0.86059 1.20284 1.00323 0.93179 0.96309 1.20732 1.02172 1.00077 0.94174 1.20916 1.01222 0.99711 0.91701 1.21090 1.00712 0.94709 0.97742 1.20909 1.00773 0.94529 0.97388 1.20269 1.00345 0.97137 0.92374 1.20701 1.02176 0.91393 1.02402 0.97599 0.89933 0.95852 0.88920 0.97664 0.93917 0.93203 0.93786 0.79718 0.92525 0.93247 0.91234 0.91595 0.90455 0.85915 0.86052 0.85936 0.90887 0.91860 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.63 37.16 0.36 -2.94 16 2 C 0.17 4.03 5.45 -4.04 -0.02 4.01 16 3 N -0.59 -14.20 2.44 -173.24 -0.42 -14.63 16 4 C -0.25 -6.66 9.71 -15.06 -0.15 -6.81 16 5 H 0.07 1.90 7.93 -52.49 -0.42 1.48 16 6 C 0.00 -0.06 4.97 -17.43 -0.09 -0.15 16 7 N -0.90 -25.13 8.57 55.49 0.48 -24.65 16 8 Si 0.90 21.79 29.61 -169.99 -5.03 16.75 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 C 0.13 2.48 5.36 -4.04 -0.02 2.46 16 13 C 0.09 1.57 3.47 -26.73 -0.09 1.47 16 14 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 15 O -0.54 -10.03 12.52 -40.08 -0.50 -10.54 16 16 C 0.04 0.56 5.32 37.16 0.20 0.75 16 17 O -0.32 -5.02 8.28 -24.27 -0.20 -5.23 16 18 C 0.10 1.36 5.67 -39.22 -0.22 1.14 16 19 C -0.10 -1.26 5.89 -104.47 -0.62 -1.88 16 20 C -0.11 -1.31 9.79 36.01 0.35 -0.96 16 21 C -0.12 -1.24 9.70 -39.61 -0.38 -1.63 16 22 C -0.12 -1.22 10.04 -39.56 -0.40 -1.62 16 23 C -0.12 -1.23 9.70 -39.60 -0.38 -1.62 16 24 C -0.10 -1.24 5.89 -104.48 -0.62 -1.86 16 25 C -0.11 -1.20 9.79 36.00 0.35 -0.85 16 26 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 27 H 0.08 2.16 6.63 -51.93 -0.34 1.81 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 2.54 5.73 -51.93 -0.30 2.24 16 30 H 0.01 0.11 7.56 -51.93 -0.39 -0.28 16 31 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.04 0.78 8.02 -51.93 -0.42 0.36 16 34 H 0.36 5.30 9.05 45.56 0.41 5.71 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.65 7.26 -51.93 -0.38 0.27 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.56 8.09 -51.92 -0.42 0.14 16 45 H 0.07 0.84 6.33 -51.93 -0.33 0.51 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -30.24 364.77 -8.67 -38.90 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.75 Total: 4.35 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.73 Total: -10.47 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.05 Total: -39.28 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.70 Total: -15.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.24 -8.67 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299506351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.972 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds