Wall clock time and date at job start Tue Mar 31 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47286 * 2 1 4 4 C 1.36932 * 120.00040 * 264.23862 * 3 2 1 5 5 H 1.07997 * 119.99623 * 187.55973 * 4 3 2 6 6 C 1.38807 * 120.00062 * 7.55097 * 4 3 2 7 7 N 1.31617 * 120.00398 * 23.08092 * 6 4 3 8 8 Si 1.86803 * 119.99852 * 203.08352 * 6 4 3 9 9 H 1.48497 * 109.47284 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47186 * 120.00262 * 8 6 4 11 11 H 1.48503 * 109.46999 * 240.00015 * 8 6 4 12 12 C 1.46507 * 119.99673 * 84.23288 * 3 2 1 13 13 C 1.52998 * 109.46810 * 96.21924 * 12 3 2 14 14 H 1.08996 * 109.47180 * 58.68430 * 13 12 3 15 15 O 1.42908 * 109.46733 * 298.68628 * 13 12 3 16 16 C 1.53000 * 109.46790 * 178.69123 * 13 12 3 17 17 O 1.42908 * 109.46870 * 184.99663 * 16 13 12 18 18 C 1.35899 * 116.99637 * 179.97438 * 17 16 13 19 19 C 1.38731 * 120.05621 * 269.72311 * 18 17 16 20 20 C 1.50703 * 120.02800 * 0.02562 * 19 18 17 21 21 C 1.38146 * 119.94125 * 179.70276 * 19 18 17 22 22 C 1.38262 * 120.05860 * 0.60345 * 21 19 18 23 23 C 1.38272 * 120.10857 * 359.67197 * 22 21 19 24 24 C 1.38147 * 120.05535 * 0.02801 * 23 22 21 25 25 C 1.50694 * 120.02662 * 179.97438 * 24 23 22 26 26 H 1.09001 * 109.47125 * 294.86930 * 1 2 3 27 27 H 1.09006 * 109.46776 * 54.86726 * 1 2 3 28 28 H 1.08997 * 109.47275 * 174.86470 * 1 2 3 29 29 H 1.09000 * 109.47187 * 240.00047 * 2 1 3 30 30 H 1.09002 * 109.46624 * 120.00106 * 2 1 3 31 31 H 0.96996 * 120.00701 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46503 * 216.21461 * 12 3 2 33 33 H 1.08992 * 109.47180 * 336.21550 * 12 3 2 34 34 H 0.96700 * 113.99803 * 299.99773 * 15 13 12 35 35 H 1.08995 * 109.46979 * 304.99103 * 16 13 12 36 36 H 1.08995 * 109.47695 * 64.99405 * 16 13 12 37 37 H 1.08993 * 109.46898 * 90.00132 * 20 19 18 38 38 H 1.09003 * 109.46783 * 209.99849 * 20 19 18 39 39 H 1.08996 * 109.46896 * 329.99658 * 20 19 18 40 40 H 1.08004 * 119.96818 * 180.27420 * 21 19 18 41 41 H 1.07996 * 119.95007 * 179.70271 * 22 21 19 42 42 H 1.08002 * 119.96926 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.47324 * 270.02447 * 25 24 23 44 44 H 1.09007 * 109.47242 * 30.02071 * 25 24 23 45 45 H 1.09003 * 109.47142 * 150.01977 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3589 1.9870 -1.1799 5 1 2.8324 2.9576 -1.1715 6 6 2.0956 1.3536 -2.3866 7 7 1.1536 0.4371 -2.4571 8 14 3.0785 1.8018 -3.9106 9 1 4.0704 2.8527 -3.5687 10 1 3.7862 0.5977 -4.4150 11 1 2.1596 2.3117 -4.9599 12 6 2.1424 2.1143 1.2624 13 6 3.5832 2.0188 1.7682 14 1 4.2593 2.4304 1.0189 15 8 3.9142 0.6493 2.0074 16 6 3.7204 2.8115 3.0696 17 8 5.0892 2.8196 3.4803 18 6 5.3853 3.4866 4.6267 19 6 5.7259 4.8306 4.5805 20 6 5.7675 5.5530 3.2585 21 6 6.0205 5.5078 5.7479 22 6 5.9883 4.8442 6.9605 23 6 5.6546 3.5032 7.0086 24 6 5.3532 2.8230 5.8446 25 6 4.9902 1.3614 5.8978 26 1 -0.3633 0.4322 0.9324 27 1 -0.3633 0.5914 -0.8405 28 1 -0.3634 -1.0235 -0.0920 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.9694 -0.0053 -3.3004 32 1 1.8822 3.1605 1.1019 33 1 1.4684 1.6815 2.0015 34 1 3.3517 0.2179 2.6651 35 1 3.3834 3.8354 2.9085 36 1 3.1113 2.3462 3.8445 37 1 4.7878 5.9817 3.0479 38 1 6.5106 6.3492 3.3028 39 1 6.0342 4.8506 2.4689 40 1 6.2815 6.5553 5.7129 41 1 6.2236 5.3742 7.8716 42 1 5.6297 2.9872 7.9570 43 1 5.8933 0.7590 5.8006 44 1 4.5074 1.1413 6.8500 45 1 4.3072 1.1267 5.0813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299506351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:31 Heat of formation + Delta-G solvation = -62.151739 kcal Electronic energy + Delta-G solvation = -24109.345783 eV Core-core repulsion = 20706.183242 eV Total energy + Delta-G solvation = -3403.162541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19668 -39.26657 -37.94163 -36.71936 -34.50747 -33.32733 -32.31564 -31.74218 -30.31604 -28.15384 -27.53587 -26.83896 -25.00739 -22.96084 -22.65801 -21.93158 -21.81149 -18.89584 -18.45663 -17.59246 -17.56561 -16.74665 -16.42518 -16.21300 -15.86102 -15.44670 -15.20154 -15.08069 -14.70496 -14.21310 -14.03620 -13.96321 -13.85761 -13.74266 -13.58607 -13.56131 -13.06376 -12.83404 -12.74755 -12.48237 -12.45548 -12.37370 -12.21886 -12.16830 -11.91986 -11.72511 -11.65948 -11.37299 -10.97864 -10.77119 -10.29411 -9.52615 -9.43881 -8.74669 -7.78799 -5.09271 0.25168 0.38433 1.45554 1.50566 1.58071 2.39497 2.56165 2.91841 3.31785 3.61263 3.69631 3.84372 3.91012 4.06438 4.11181 4.18711 4.36022 4.39334 4.43245 4.48413 4.51579 4.64360 4.67643 4.72545 4.77126 4.78851 4.89304 4.92620 4.94073 5.09423 5.17577 5.21442 5.27434 5.31941 5.34847 5.53284 5.53479 5.61118 5.65008 5.87238 5.90649 6.15514 6.39468 6.65307 6.98498 7.23900 7.96187 8.34447 9.22804 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003661 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.731787 B = 7647.092832 C = 8445.648418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.171 3.829 3 N -0.602 5.602 4 C -0.254 4.254 5 H 0.070 0.930 6 C -0.051 4.051 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.296 1.296 11 H -0.294 1.294 12 C 0.128 3.872 13 C 0.103 3.897 14 H 0.070 0.930 15 O -0.561 6.561 16 C 0.051 3.949 17 O -0.341 6.341 18 C 0.064 3.936 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.109 4.109 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.027 0.973 31 H 0.245 0.755 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.375 0.625 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 7.607 20.992 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.046 3.954 3 N -0.324 5.324 4 C -0.384 4.384 5 H 0.087 0.913 6 C -0.246 4.246 7 N -0.564 5.564 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.223 1.223 11 H -0.222 1.222 12 C 0.001 3.999 13 C 0.041 3.959 14 H 0.088 0.912 15 O -0.366 6.366 16 C -0.024 4.024 17 O -0.258 6.258 18 C 0.021 3.979 19 C -0.118 4.118 20 C -0.169 4.169 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.115 4.115 25 C -0.165 4.165 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.222 0.778 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.048 7.553 20.268 22.749 hybrid contribution -0.174 0.070 -0.895 0.914 sum 6.874 7.623 19.373 21.924 Atomic orbital electron populations 1.22033 0.98810 0.99101 0.98965 1.20712 0.92384 0.84347 0.97985 1.44105 1.75681 1.11094 1.01478 1.19499 1.31633 1.02386 0.84895 0.91254 1.25290 0.99310 1.00385 0.99593 1.70334 1.30278 1.31066 1.24683 0.85461 0.78926 0.77001 0.80617 1.19973 1.22341 1.22169 1.21352 0.93517 0.96719 0.88349 1.22556 0.98556 0.81389 0.93430 0.91204 1.86629 1.60782 1.24558 1.64676 1.23422 0.81549 1.00649 0.96780 1.86087 1.26894 1.73580 1.39248 1.18789 1.02262 0.90877 0.85969 1.20491 1.00908 0.93039 0.97349 1.20707 1.02925 0.99964 0.93296 1.21238 1.00466 1.00853 0.91288 1.21514 0.98964 0.94605 0.98643 1.21259 0.99816 0.95001 0.97705 1.20505 1.00717 0.97800 0.92505 1.20706 1.01911 0.90774 1.03125 0.95489 0.93391 0.94716 0.92599 0.95515 0.94573 0.92955 0.91465 0.77766 0.91913 0.91418 0.90897 0.89705 0.92837 0.83610 0.82921 0.83411 0.91243 0.89625 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 9.63 71.98 0.69 -5.17 16 2 C 0.17 8.20 5.45 86.38 0.47 8.67 16 3 N -0.60 -29.23 2.44 -702.00 -1.71 -30.95 16 4 C -0.25 -13.85 9.71 84.03 0.82 -13.03 16 5 H 0.07 3.72 7.93 -2.91 -0.02 3.69 16 6 C -0.05 -2.85 4.97 84.86 0.42 -2.43 16 7 N -0.92 -52.51 8.57 21.65 0.19 -52.32 16 8 Si 0.95 45.77 29.61 68.60 2.03 47.80 16 9 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 C 0.13 4.85 5.36 86.38 0.46 5.31 16 13 C 0.10 3.64 3.47 30.59 0.11 3.74 16 14 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 15 O -0.56 -20.55 12.52 -144.35 -1.81 -22.36 16 16 C 0.05 1.45 5.32 71.98 0.38 1.84 16 17 O -0.34 -10.65 8.28 -87.78 -0.73 -11.38 16 18 C 0.06 1.75 5.67 22.51 0.13 1.87 16 19 C -0.12 -2.80 5.89 -19.77 -0.12 -2.92 16 20 C -0.11 -2.51 9.79 71.24 0.70 -1.81 16 21 C -0.12 -2.23 9.70 22.25 0.22 -2.01 16 22 C -0.12 -1.92 10.04 22.28 0.22 -1.70 16 23 C -0.12 -2.14 9.70 22.26 0.22 -1.93 16 24 C -0.11 -2.64 5.89 -19.77 -0.12 -2.76 16 25 C -0.11 -2.20 9.79 71.23 0.70 -1.50 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 2.51 6.63 -2.38 -0.02 2.49 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 3.12 5.73 -2.39 -0.01 3.11 16 30 H 0.03 1.15 7.56 -2.39 -0.02 1.13 16 31 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 32 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 33 H 0.07 2.23 8.02 -2.39 -0.02 2.21 16 34 H 0.37 10.60 9.05 -74.06 -0.67 9.93 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.67 7.26 -2.39 -0.02 1.65 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 39 H 0.05 1.43 7.53 -2.39 -0.02 1.41 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.29 8.09 -2.38 -0.02 1.27 16 45 H 0.06 1.32 6.33 -2.39 -0.02 1.31 16 Total: -1.00 -66.17 364.77 3.56 -62.60 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.30 Total: 20.42 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 5.30 Total: -13.82 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.53 Total: -83.27 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -2.53 Total: -33.74 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -66.17 3.56 -62.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299506351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.452 kcal (2) G-P(sol) polarization free energy of solvation -66.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds