Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46991 * 2 1 4 4 C 1.36938 * 120.00307 * 83.20992 * 3 2 1 5 5 H 1.08000 * 120.00333 * 168.47388 * 4 3 2 6 6 C 1.38812 * 119.99798 * 348.47337 * 4 3 2 7 7 N 1.31625 * 119.99966 * 8.69346 * 6 4 3 8 8 Si 1.86803 * 120.00054 * 188.69329 * 6 4 3 9 9 H 1.48503 * 109.46742 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47148 * 119.99891 * 8 6 4 11 11 H 1.48499 * 109.47155 * 240.00052 * 8 6 4 12 12 C 1.46502 * 119.99711 * 263.20762 * 3 2 1 13 13 C 1.53000 * 109.47070 * 264.39161 * 12 3 2 14 14 H 1.09005 * 109.47205 * 306.22674 * 13 12 3 15 15 O 1.42903 * 109.47440 * 66.22441 * 13 12 3 16 16 C 1.53006 * 109.47199 * 186.22804 * 13 12 3 17 17 O 1.42898 * 109.46822 * 174.99930 * 16 13 12 18 18 C 1.35909 * 116.99740 * 179.97438 * 17 16 13 19 19 C 1.38730 * 120.05677 * 270.27620 * 18 17 16 20 20 C 1.50700 * 120.02627 * 359.97438 * 19 18 17 21 21 C 1.38143 * 119.94409 * 180.25050 * 19 18 17 22 22 C 1.38267 * 120.05181 * 359.45186 * 21 19 18 23 23 C 1.38265 * 120.11705 * 0.29338 * 22 21 19 24 24 C 1.38142 * 120.05219 * 359.97438 * 23 22 21 25 25 C 1.50700 * 120.02908 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47215 * 67.32301 * 1 2 3 27 27 H 1.09006 * 109.47009 * 187.31701 * 1 2 3 28 28 H 1.08995 * 109.47276 * 307.31328 * 1 2 3 29 29 H 1.09004 * 109.47379 * 239.99421 * 2 1 3 30 30 H 1.09005 * 109.47158 * 119.99722 * 2 1 3 31 31 H 0.97001 * 119.99485 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.46898 * 144.39640 * 12 3 2 33 33 H 1.08992 * 109.47528 * 24.39155 * 12 3 2 34 34 H 0.96697 * 113.99652 * 60.00047 * 15 13 12 35 35 H 1.08999 * 109.46790 * 55.00139 * 16 13 12 36 36 H 1.09003 * 109.46571 * 294.99858 * 16 13 12 37 37 H 1.08992 * 109.47241 * 270.25278 * 20 19 18 38 38 H 1.09000 * 109.47459 * 30.26148 * 20 19 18 39 39 H 1.09004 * 109.46553 * 150.25545 * 20 19 18 40 40 H 1.08000 * 119.97459 * 179.72341 * 21 19 18 41 41 H 1.08003 * 119.94215 * 180.27759 * 22 21 19 42 42 H 1.07999 * 119.97516 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47220 * 90.00108 * 25 24 23 44 44 H 1.09006 * 109.46980 * 210.00057 * 25 24 23 45 45 H 1.08999 * 109.46919 * 329.99553 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1143 2.0735 1.1776 5 1 2.6428 3.0149 1.2090 6 6 1.5325 1.5653 2.3309 7 7 1.0388 0.3452 2.3363 8 14 1.4500 2.6132 3.8751 9 1 2.0707 3.9358 3.6095 10 1 0.0309 2.8020 4.2700 11 1 2.1833 1.9344 4.9736 12 6 2.4039 2.0217 -1.2599 13 6 3.9150 1.8874 -1.4587 14 1 4.4327 2.2718 -0.5798 15 8 4.2505 0.5109 -1.6450 16 6 4.3403 2.6875 -2.6916 17 8 5.7640 2.6581 -2.8106 18 6 6.3092 3.3254 -3.8616 19 6 6.5061 2.6748 -5.0710 20 6 6.1161 1.2269 -5.2206 21 6 7.0652 3.3539 -6.1362 22 6 7.4180 4.6839 -6.0011 23 6 7.2180 5.3361 -4.7984 24 6 6.6643 4.6599 -3.7286 25 6 6.4470 5.3711 -2.4178 26 1 -0.3633 0.3962 -0.9482 27 1 -0.3633 -1.0194 0.1309 28 1 -0.3633 0.6229 0.8173 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.6319 -0.0097 3.1421 32 1 2.1340 3.0773 -1.2282 33 1 1.8843 1.5385 -2.0872 34 1 3.8246 0.1025 -2.4110 35 1 4.0056 3.7196 -2.5881 36 1 3.8920 2.2476 -3.5825 37 1 6.9595 0.5933 -4.9466 38 1 5.2707 1.0089 -4.5681 39 1 5.8360 1.0313 -6.2558 40 1 7.2229 2.8467 -7.0765 41 1 7.8509 5.2144 -6.8364 42 1 7.4948 6.3749 -4.6953 43 1 5.4555 5.8238 -2.4100 44 1 6.5264 4.6560 -1.5989 45 1 7.2021 6.1477 -2.2963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299506353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = -39.561504 kcal Electronic energy + Delta-G solvation = -24104.958778 eV Core-core repulsion = 20702.775823 eV Total energy + Delta-G solvation = -3402.182955 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24578 -37.93788 -36.61581 -35.10984 -33.65928 -31.57543 -31.16020 -30.04347 -28.70712 -27.04504 -26.72199 -25.26689 -23.21970 -21.80032 -21.30120 -20.95535 -20.13723 -17.67482 -16.87394 -16.53562 -16.07484 -15.44485 -15.11678 -14.83126 -14.58176 -14.16905 -13.73374 -13.46754 -13.36981 -13.17253 -13.07508 -12.93123 -12.72515 -12.64041 -11.97684 -11.91241 -11.64777 -11.60855 -11.33280 -11.27712 -11.17151 -10.88844 -10.64404 -10.46436 -10.29187 -9.87267 -9.78722 -9.69489 -9.60255 -9.30949 -8.69506 -8.54061 -8.28374 -6.75737 -5.57536 -3.08836 1.13120 1.21981 3.35411 3.40372 3.46837 3.48392 3.91463 4.50773 4.67676 4.72262 4.83873 4.93581 5.12174 5.18497 5.29334 5.32910 5.39975 5.45617 5.50074 5.57936 5.59132 5.62988 5.71810 5.73289 5.78972 5.95860 6.03406 6.06718 6.20220 6.33467 6.36153 6.49849 6.51462 6.68823 6.70080 6.76224 7.06225 7.15135 7.32108 7.66758 7.70597 8.01432 8.15422 8.25373 8.54673 9.32352 9.92015 10.34377 11.33074 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.003645 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.048165 B = 7680.577161 C = 8591.628602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.169 3.831 3 N -0.591 5.591 4 C -0.242 4.242 5 H 0.072 0.928 6 C -0.006 4.006 7 N -0.904 5.904 8 Si 0.906 3.094 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.292 1.292 12 C 0.129 3.871 13 C 0.087 3.913 14 H 0.104 0.896 15 O -0.542 6.542 16 C 0.038 3.962 17 O -0.321 6.321 18 C 0.098 3.902 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.100 4.100 25 C -0.115 4.115 26 H -0.003 1.003 27 H 0.021 0.979 28 H 0.078 0.922 29 H -0.001 1.001 30 H 0.105 0.895 31 H 0.248 0.752 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.358 0.642 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 6.481 -16.547 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 N -0.312 5.312 4 C -0.371 4.371 5 H 0.090 0.910 6 C -0.202 4.202 7 N -0.552 5.552 8 Si 0.737 3.263 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.219 1.219 12 C 0.000 4.000 13 C 0.024 3.976 14 H 0.122 0.878 15 O -0.345 6.345 16 C -0.037 4.037 17 O -0.238 6.238 18 C 0.054 3.946 19 C -0.101 4.101 20 C -0.167 4.167 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.101 4.101 25 C -0.172 4.172 26 H 0.016 0.984 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.017 0.983 30 H 0.123 0.877 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.203 0.797 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.469 6.398 -15.678 19.400 hybrid contribution -0.498 0.705 0.056 0.865 sum 8.971 7.103 -15.622 19.364 Atomic orbital electron populations 1.22354 0.99708 0.98940 0.98334 1.21048 0.91834 0.83955 0.98706 1.44044 1.74500 1.11578 1.01068 1.19326 1.28301 1.02752 0.86758 0.90993 1.24831 1.00164 0.96940 0.98243 1.70214 1.44318 1.14037 1.26645 0.86133 0.77252 0.79608 0.83297 1.20614 1.21754 1.21877 1.21242 0.91006 0.97648 0.90127 1.23079 0.98812 0.80885 0.94837 0.87809 1.86684 1.72442 1.24025 1.51380 1.23733 0.79024 1.00912 1.00059 1.86148 1.21340 1.72159 1.44187 1.18506 0.98580 0.90066 0.87470 1.20274 0.99993 0.97244 0.92639 1.20701 1.02391 0.91627 1.01946 1.20904 0.99859 0.94609 0.98226 1.21090 1.00750 0.94835 0.97583 1.20916 1.00282 0.99747 0.92602 1.20290 0.99859 0.93199 0.96741 1.20735 1.01906 1.00201 0.94326 0.98388 0.96003 0.90345 0.98319 0.87732 0.94069 0.93204 0.93701 0.79718 0.92520 0.93274 0.90881 0.91052 0.91861 0.85938 0.86055 0.85915 0.91230 0.90444 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.30 37.16 0.35 -2.84 16 2 C 0.17 4.15 5.68 -4.04 -0.02 4.12 16 3 N -0.59 -14.43 2.52 -173.24 -0.44 -14.87 16 4 C -0.24 -6.48 9.75 -15.06 -0.15 -6.63 16 5 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 6 C -0.01 -0.16 5.07 -17.43 -0.09 -0.25 16 7 N -0.90 -25.25 7.51 55.49 0.42 -24.83 16 8 Si 0.91 21.69 29.56 -169.99 -5.03 16.67 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 C 0.13 2.50 5.28 -4.04 -0.02 2.48 16 13 C 0.09 1.55 3.45 -26.73 -0.09 1.46 16 14 H 0.10 2.15 8.14 -51.93 -0.42 1.73 16 15 O -0.54 -10.13 13.09 -40.09 -0.52 -10.66 16 16 C 0.04 0.56 5.32 37.16 0.20 0.76 16 17 O -0.32 -5.07 8.29 -24.31 -0.20 -5.27 16 18 C 0.10 1.37 5.67 -39.21 -0.22 1.15 16 19 C -0.10 -1.25 5.89 -104.48 -0.62 -1.87 16 20 C -0.11 -1.21 9.79 36.01 0.35 -0.85 16 21 C -0.12 -1.24 9.70 -39.61 -0.38 -1.62 16 22 C -0.12 -1.23 10.04 -39.56 -0.40 -1.63 16 23 C -0.12 -1.25 9.70 -39.61 -0.38 -1.64 16 24 C -0.10 -1.27 5.89 -104.47 -0.62 -1.89 16 25 C -0.12 -1.33 9.79 36.01 0.35 -0.98 16 26 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 2.10 6.13 -51.93 -0.32 1.78 16 29 H 0.00 -0.03 7.85 -51.93 -0.41 -0.44 16 30 H 0.11 2.93 5.85 -51.93 -0.30 2.62 16 31 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 34 H 0.36 5.29 9.04 45.56 0.41 5.70 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.65 7.23 -51.93 -0.38 0.27 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 39 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.02 7.53 -51.93 -0.39 0.63 16 45 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -30.16 364.02 -8.77 -38.93 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.74 Total: 4.78 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.74 Total: -10.22 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: -0.02 Total: -39.70 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.73 Total: -15.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.16 -8.77 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299506353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.634 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds