Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46991 * 2 1 4 4 C 1.36938 * 120.00307 * 83.20992 * 3 2 1 5 5 H 1.08000 * 120.00333 * 168.47388 * 4 3 2 6 6 C 1.38812 * 119.99798 * 348.47337 * 4 3 2 7 7 N 1.31625 * 119.99966 * 8.69346 * 6 4 3 8 8 Si 1.86803 * 120.00054 * 188.69329 * 6 4 3 9 9 H 1.48503 * 109.46742 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47148 * 119.99891 * 8 6 4 11 11 H 1.48499 * 109.47155 * 240.00052 * 8 6 4 12 12 C 1.46502 * 119.99711 * 263.20762 * 3 2 1 13 13 C 1.53000 * 109.47070 * 264.39161 * 12 3 2 14 14 H 1.09005 * 109.47205 * 306.22674 * 13 12 3 15 15 O 1.42903 * 109.47440 * 66.22441 * 13 12 3 16 16 C 1.53006 * 109.47199 * 186.22804 * 13 12 3 17 17 O 1.42898 * 109.46822 * 174.99930 * 16 13 12 18 18 C 1.35909 * 116.99740 * 179.97438 * 17 16 13 19 19 C 1.38730 * 120.05677 * 270.27620 * 18 17 16 20 20 C 1.50700 * 120.02627 * 359.97438 * 19 18 17 21 21 C 1.38143 * 119.94409 * 180.25050 * 19 18 17 22 22 C 1.38267 * 120.05181 * 359.45186 * 21 19 18 23 23 C 1.38265 * 120.11705 * 0.29338 * 22 21 19 24 24 C 1.38142 * 120.05219 * 359.97438 * 23 22 21 25 25 C 1.50700 * 120.02908 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47215 * 67.32301 * 1 2 3 27 27 H 1.09006 * 109.47009 * 187.31701 * 1 2 3 28 28 H 1.08995 * 109.47276 * 307.31328 * 1 2 3 29 29 H 1.09004 * 109.47379 * 239.99421 * 2 1 3 30 30 H 1.09005 * 109.47158 * 119.99722 * 2 1 3 31 31 H 0.97001 * 119.99485 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.46898 * 144.39640 * 12 3 2 33 33 H 1.08992 * 109.47528 * 24.39155 * 12 3 2 34 34 H 0.96697 * 113.99652 * 60.00047 * 15 13 12 35 35 H 1.08999 * 109.46790 * 55.00139 * 16 13 12 36 36 H 1.09003 * 109.46571 * 294.99858 * 16 13 12 37 37 H 1.08992 * 109.47241 * 270.25278 * 20 19 18 38 38 H 1.09000 * 109.47459 * 30.26148 * 20 19 18 39 39 H 1.09004 * 109.46553 * 150.25545 * 20 19 18 40 40 H 1.08000 * 119.97459 * 179.72341 * 21 19 18 41 41 H 1.08003 * 119.94215 * 180.27759 * 22 21 19 42 42 H 1.07999 * 119.97516 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47220 * 90.00108 * 25 24 23 44 44 H 1.09006 * 109.46980 * 210.00057 * 25 24 23 45 45 H 1.08999 * 109.46919 * 329.99553 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1143 2.0735 1.1776 5 1 2.6428 3.0149 1.2090 6 6 1.5325 1.5653 2.3309 7 7 1.0388 0.3452 2.3363 8 14 1.4500 2.6132 3.8751 9 1 2.0707 3.9358 3.6095 10 1 0.0309 2.8020 4.2700 11 1 2.1833 1.9344 4.9736 12 6 2.4039 2.0217 -1.2599 13 6 3.9150 1.8874 -1.4587 14 1 4.4327 2.2718 -0.5798 15 8 4.2505 0.5109 -1.6450 16 6 4.3403 2.6875 -2.6916 17 8 5.7640 2.6581 -2.8106 18 6 6.3092 3.3254 -3.8616 19 6 6.5061 2.6748 -5.0710 20 6 6.1161 1.2269 -5.2206 21 6 7.0652 3.3539 -6.1362 22 6 7.4180 4.6839 -6.0011 23 6 7.2180 5.3361 -4.7984 24 6 6.6643 4.6599 -3.7286 25 6 6.4470 5.3711 -2.4178 26 1 -0.3633 0.3962 -0.9482 27 1 -0.3633 -1.0194 0.1309 28 1 -0.3633 0.6229 0.8173 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.6319 -0.0097 3.1421 32 1 2.1340 3.0773 -1.2282 33 1 1.8843 1.5385 -2.0872 34 1 3.8246 0.1025 -2.4110 35 1 4.0056 3.7196 -2.5881 36 1 3.8920 2.2476 -3.5825 37 1 6.9595 0.5933 -4.9466 38 1 5.2707 1.0089 -4.5681 39 1 5.8360 1.0313 -6.2558 40 1 7.2229 2.8467 -7.0765 41 1 7.8509 5.2144 -6.8364 42 1 7.4948 6.3749 -4.6953 43 1 5.4555 5.8238 -2.4100 44 1 6.5264 4.6560 -1.5989 45 1 7.2021 6.1477 -2.2963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299506353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = -56.857522 kcal Electronic energy + Delta-G solvation = -24105.708789 eV Core-core repulsion = 20702.775823 eV Total energy + Delta-G solvation = -3402.932966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20046 -39.26519 -37.95233 -36.79421 -34.51030 -33.32326 -32.25594 -31.68001 -30.32551 -28.14638 -27.53875 -26.84483 -24.98835 -22.91032 -22.66478 -21.95932 -21.81313 -18.93134 -18.46477 -17.61317 -17.59448 -16.77543 -16.40774 -16.21367 -15.86963 -15.38797 -15.14567 -15.05171 -14.72283 -14.20610 -14.02184 -13.96685 -13.85942 -13.77699 -13.57342 -13.37956 -13.10578 -12.83706 -12.75277 -12.50362 -12.44764 -12.35455 -12.22287 -12.16950 -11.89005 -11.70605 -11.58103 -11.44515 -10.98716 -10.77274 -10.29682 -9.52854 -9.44265 -8.69003 -7.62438 -5.13809 0.24962 0.38244 1.47887 1.49754 1.58240 2.40111 2.55849 2.92218 3.37711 3.61074 3.69889 3.84133 3.90798 4.06554 4.11080 4.18226 4.35945 4.39172 4.42765 4.49300 4.51902 4.64119 4.67542 4.72212 4.78627 4.79862 4.89115 4.92506 4.94947 5.12993 5.18747 5.22473 5.29322 5.34483 5.39382 5.53102 5.53312 5.60947 5.64843 5.90187 5.98976 6.18780 6.51643 6.65273 6.97992 7.28149 7.98601 8.35492 9.26211 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.003645 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.048165 B = 7680.577161 C = 8591.628602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.174 3.826 3 N -0.608 5.608 4 C -0.250 4.250 5 H 0.072 0.928 6 C -0.056 4.056 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.293 1.293 11 H -0.298 1.298 12 C 0.128 3.872 13 C 0.101 3.899 14 H 0.068 0.932 15 O -0.563 6.563 16 C 0.051 3.949 17 O -0.341 6.341 18 C 0.064 3.936 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.112 4.112 26 H 0.015 0.985 27 H 0.029 0.971 28 H 0.046 0.954 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.241 0.759 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.376 0.624 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 7.800 -19.186 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 N -0.329 5.329 4 C -0.380 4.380 5 H 0.089 0.911 6 C -0.250 4.250 7 N -0.572 5.572 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.220 1.220 11 H -0.226 1.226 12 C 0.001 3.999 13 C 0.039 3.961 14 H 0.086 0.914 15 O -0.369 6.369 16 C -0.024 4.024 17 O -0.259 6.259 18 C 0.021 3.979 19 C -0.115 4.115 20 C -0.165 4.165 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.169 4.169 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.223 0.777 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.192 7.734 -18.358 22.377 hybrid contribution -0.618 0.310 0.752 1.022 sum 9.574 8.044 -17.606 21.595 Atomic orbital electron populations 1.22141 0.99119 0.98817 0.97879 1.20824 0.92266 0.84192 0.97829 1.44199 1.75056 1.11614 1.02066 1.19581 1.27729 1.02779 0.87948 0.91058 1.25482 1.00733 0.97991 1.00761 1.70426 1.45094 1.14991 1.26683 0.85244 0.76762 0.78597 0.80106 1.19618 1.21970 1.22551 1.21409 0.91929 0.97838 0.88761 1.22626 0.97191 0.81124 0.95181 0.91416 1.86632 1.73004 1.24527 1.52698 1.23434 0.79454 1.00606 0.98899 1.86093 1.21425 1.72831 1.45523 1.18808 1.00315 0.91015 0.87783 1.20511 1.00464 0.97910 0.92659 1.20707 1.01746 0.90989 1.03072 1.21257 0.98870 0.95040 0.98583 1.21516 0.99358 0.94709 0.98125 1.21239 0.99470 1.00852 0.92269 1.20492 1.00570 0.93072 0.97662 1.20708 1.02793 1.00021 0.93374 0.96567 0.95223 0.93529 0.96242 0.91484 0.94850 0.92597 0.91384 0.77686 0.91930 0.91357 0.91260 0.92278 0.89583 0.83381 0.82895 0.83599 0.90906 0.92893 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 9.30 71.98 0.67 -5.00 16 2 C 0.17 8.54 5.68 86.38 0.49 9.03 16 3 N -0.61 -29.75 2.52 -702.01 -1.77 -31.52 16 4 C -0.25 -13.58 9.75 84.03 0.82 -12.76 16 5 H 0.07 3.78 7.84 -2.91 -0.02 3.76 16 6 C -0.06 -3.11 5.07 84.86 0.43 -2.68 16 7 N -0.92 -52.82 7.51 21.65 0.16 -52.66 16 8 Si 0.96 45.40 29.56 68.60 2.03 47.43 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 12 C 0.13 4.87 5.28 86.38 0.46 5.33 16 13 C 0.10 3.63 3.45 30.60 0.11 3.73 16 14 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 15 O -0.56 -20.93 13.09 -144.34 -1.89 -22.82 16 16 C 0.05 1.48 5.32 71.98 0.38 1.86 16 17 O -0.34 -10.82 8.29 -87.88 -0.73 -11.55 16 18 C 0.06 1.76 5.67 22.51 0.13 1.89 16 19 C -0.11 -2.66 5.89 -19.77 -0.12 -2.78 16 20 C -0.11 -2.21 9.79 71.24 0.70 -1.52 16 21 C -0.12 -2.15 9.70 22.25 0.22 -1.93 16 22 C -0.12 -1.93 10.04 22.28 0.22 -1.71 16 23 C -0.12 -2.25 9.70 22.25 0.22 -2.03 16 24 C -0.12 -2.84 5.89 -19.77 -0.12 -2.95 16 25 C -0.11 -2.55 9.79 71.24 0.70 -1.85 16 26 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.05 2.50 6.13 -2.39 -0.01 2.48 16 29 H 0.02 0.86 7.85 -2.38 -0.02 0.84 16 30 H 0.07 3.84 5.85 -2.38 -0.01 3.83 16 31 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 32 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 33 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 34 H 0.38 10.68 9.04 -74.06 -0.67 10.01 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.70 7.23 -2.39 -0.02 1.68 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.33 6.30 -2.39 -0.02 1.31 16 39 H 0.09 1.30 8.09 -2.38 -0.02 1.28 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.44 7.53 -2.38 -0.02 1.42 16 45 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 Total: -1.00 -66.18 364.02 3.40 -62.78 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.30 Total: 21.72 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 5.30 Total: -13.38 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.60 Total: -84.18 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -2.62 Total: -34.37 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.18 3.40 -62.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299506353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.919 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds