Wall clock time and date at job start Tue Mar 31 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47132 * 2 1 4 4 C 1.36934 * 119.99567 * 275.29963 * 3 2 1 5 5 H 1.08000 * 120.00127 * 37.73837 * 4 3 2 6 6 C 1.38812 * 120.00154 * 217.72416 * 4 3 2 7 7 N 1.31627 * 119.99830 * 21.25890 * 6 4 3 8 8 Si 1.86797 * 120.00226 * 201.25141 * 6 4 3 9 9 H 1.48502 * 109.46967 * 60.00359 * 8 6 4 10 10 H 1.48507 * 109.46973 * 179.97438 * 8 6 4 11 11 H 1.48489 * 109.47344 * 300.00304 * 8 6 4 12 12 C 1.46497 * 120.00153 * 95.30719 * 3 2 1 13 13 C 1.52993 * 109.47103 * 269.99616 * 12 3 2 14 14 H 1.09005 * 109.46850 * 60.00151 * 13 12 3 15 15 O 1.42898 * 109.47455 * 300.00150 * 13 12 3 16 16 C 1.53003 * 109.47261 * 180.02562 * 13 12 3 17 17 O 1.42901 * 109.47070 * 185.00220 * 16 13 12 18 18 C 1.35902 * 116.99752 * 179.97438 * 17 16 13 19 19 C 1.38756 * 120.05545 * 359.72798 * 18 17 16 20 20 C 1.38124 * 119.94044 * 179.74330 * 19 18 17 21 21 C 1.50699 * 119.96925 * 180.25515 * 20 19 18 22 22 C 1.38286 * 120.05756 * 0.50175 * 20 19 18 23 23 C 1.38241 * 120.11223 * 359.77487 * 22 20 19 24 24 C 1.38167 * 120.05567 * 359.97383 * 23 22 20 25 25 C 1.50703 * 120.03050 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.47080 * 300.00601 * 1 2 3 27 27 H 1.09002 * 109.47179 * 59.99974 * 1 2 3 28 28 H 1.08999 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47010 * 239.99285 * 2 1 3 30 30 H 1.09005 * 109.46459 * 120.00035 * 2 1 3 31 31 H 0.96994 * 119.99774 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47307 * 149.99426 * 12 3 2 33 33 H 1.09001 * 109.47090 * 29.99765 * 12 3 2 34 34 H 0.96704 * 113.99966 * 300.00337 * 15 13 12 35 35 H 1.08999 * 109.46863 * 304.99941 * 16 13 12 36 36 H 1.08994 * 109.47022 * 64.99708 * 16 13 12 37 37 H 1.07997 * 120.02915 * 359.97211 * 19 18 17 38 38 H 1.09006 * 109.47010 * 270.24832 * 21 20 19 39 39 H 1.08995 * 109.47567 * 30.24738 * 21 20 19 40 40 H 1.09007 * 109.47252 * 150.25281 * 21 20 19 41 41 H 1.08001 * 119.94183 * 179.74432 * 22 20 19 42 42 H 1.07995 * 119.97413 * 179.97438 * 23 22 20 43 43 H 1.09000 * 109.46868 * 270.01885 * 25 24 23 44 44 H 1.09000 * 109.46933 * 30.01492 * 25 24 23 45 45 H 1.09002 * 109.47103 * 150.01784 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0631 -1.1809 5 1 1.4094 1.9295 -1.9619 6 6 3.2130 2.9264 -1.3740 7 7 4.3038 2.7951 -0.6492 8 14 3.1046 4.2743 -2.6628 9 1 1.9693 5.1761 -2.3415 10 1 4.3685 5.0540 -2.6711 11 1 2.8896 3.6648 -3.9996 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7383 1.8364 14 1 0.3541 2.0069 2.0137 15 8 0.6808 3.7207 0.9070 16 6 1.5133 3.4193 3.1554 17 8 0.3399 3.9790 3.7487 18 6 0.4959 4.6241 4.9346 19 6 1.7518 4.7117 5.5181 20 6 1.9086 5.3725 6.7208 21 6 3.2732 5.4730 7.3523 22 6 0.8136 5.9376 7.3486 23 6 -0.4396 5.8467 6.7721 24 6 -0.6009 5.1913 5.5666 25 6 -1.9675 5.0921 4.9390 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 5.0511 3.3986 -0.7839 32 1 3.1617 2.7641 1.0860 33 1 2.7254 1.2833 1.9721 34 1 1.3325 4.4051 0.7019 35 1 1.9485 2.6853 3.8335 36 1 2.2371 4.2115 2.9644 37 1 2.6065 4.2668 5.0305 38 1 3.4350 4.6160 8.0061 39 1 4.0346 5.4839 6.5724 40 1 3.3371 6.3919 7.9353 41 1 0.9376 6.4503 8.2910 42 1 -1.2933 6.2885 7.2645 43 1 -2.4633 4.1869 5.2894 44 1 -2.5601 5.9628 5.2194 45 1 -1.8672 5.0547 3.8542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299517051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:35 Heat of formation + Delta-G solvation = -74.117025 kcal Electronic energy + Delta-G solvation = -24089.634268 eV Core-core repulsion = 20685.952874 eV Total energy + Delta-G solvation = -3403.681395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28110 -39.32092 -38.15314 -36.50209 -34.68072 -33.80236 -32.01917 -30.97695 -30.14481 -30.08188 -27.42006 -25.76180 -25.34198 -23.46150 -22.51947 -22.11481 -21.61862 -19.05359 -18.21243 -17.61964 -17.37045 -16.84272 -16.55343 -16.27082 -15.89603 -15.47846 -15.31282 -15.14523 -14.84977 -14.43206 -14.13149 -14.09466 -13.98030 -13.76856 -13.45869 -13.42922 -13.16685 -12.97991 -12.70152 -12.62079 -12.58461 -12.37728 -12.20467 -12.08242 -12.01583 -11.79636 -11.75423 -11.60831 -11.38510 -10.83116 -10.48569 -9.65176 -8.98587 -8.51535 -7.79980 -5.40456 0.35263 0.50233 1.47047 1.50640 1.57904 2.17562 2.54648 2.76910 3.26315 3.55872 3.69750 3.79851 3.88546 3.99937 4.09675 4.12880 4.24814 4.32838 4.39659 4.44401 4.51405 4.66080 4.69291 4.77682 4.77778 4.80701 4.82114 4.83681 4.85043 4.88851 5.05559 5.09007 5.15545 5.28779 5.37100 5.41364 5.55219 5.57485 5.64143 5.66255 5.74085 5.93545 6.46626 6.50612 6.89186 7.20599 7.86665 8.40022 9.15862 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.004021 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.293175 B = 6961.241271 C = 7427.968690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.591 5.591 4 C -0.244 4.244 5 H 0.043 0.957 6 C -0.027 4.027 7 N -0.919 5.919 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.126 3.874 13 C 0.102 3.898 14 H 0.084 0.916 15 O -0.555 6.555 16 C 0.041 3.959 17 O -0.319 6.319 18 C 0.107 3.893 19 C -0.224 4.224 20 C -0.062 4.062 21 C -0.114 4.114 22 C -0.161 4.161 23 C -0.081 4.081 24 C -0.146 4.146 25 C -0.100 4.100 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.252 0.748 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.368 0.632 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 4.792 17.386 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.311 5.311 4 C -0.375 4.375 5 H 0.060 0.940 6 C -0.224 4.224 7 N -0.563 5.563 8 Si 0.776 3.224 9 H -0.205 1.205 10 H -0.219 1.219 11 H -0.209 1.209 12 C -0.001 4.001 13 C 0.040 3.960 14 H 0.101 0.899 15 O -0.359 6.359 16 C -0.036 4.036 17 O -0.233 6.233 18 C 0.062 3.938 19 C -0.243 4.243 20 C -0.062 4.062 21 C -0.170 4.170 22 C -0.179 4.179 23 C -0.098 4.098 24 C -0.146 4.146 25 C -0.157 4.157 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.214 0.786 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.316 4.432 17.252 18.899 hybrid contribution 0.928 0.828 -1.031 1.615 sum -5.388 5.260 16.221 17.884 Atomic orbital electron populations 1.22181 0.97985 1.00571 1.00345 1.21014 0.93241 0.85697 0.99110 1.43757 1.76038 1.09292 1.02031 1.18946 1.03331 1.20992 0.94237 0.93963 1.25581 0.93938 1.02888 0.99985 1.70090 1.03609 1.38345 1.44280 0.85672 0.76493 0.80333 0.79885 1.20451 1.21852 1.20885 1.21376 0.94805 0.97308 0.86647 1.22698 0.99029 0.89698 0.84528 0.89852 1.86501 1.43711 1.40716 1.64998 1.23584 0.86646 0.97667 0.95654 1.86131 1.35504 1.68361 1.33299 1.19300 0.94541 0.94067 0.85917 1.21316 0.96244 1.07264 0.99452 1.20061 0.97490 0.95235 0.93404 1.20857 0.91599 1.03669 1.00879 1.21258 0.91868 1.03045 1.01730 1.21188 0.98633 0.96884 0.93141 1.19599 0.94825 1.02922 0.97288 1.20570 0.92308 1.02855 0.99971 0.94005 0.94983 0.91385 0.94705 0.93095 0.93893 0.90660 0.93761 0.78581 0.90464 0.92120 0.85667 0.90009 0.91728 0.89647 0.83255 0.82773 0.91163 0.89727 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 10.21 71.98 0.73 -4.81 16 2 C 0.13 5.60 6.44 86.38 0.56 6.16 16 3 N -0.59 -28.66 2.38 -702.02 -1.67 -30.33 16 4 C -0.24 -13.18 8.80 84.03 0.74 -12.44 16 5 H 0.04 2.38 7.91 -2.91 -0.02 2.35 16 6 C -0.03 -1.45 4.96 84.86 0.42 -1.03 16 7 N -0.92 -51.11 11.47 21.65 0.25 -50.86 16 8 Si 0.95 43.94 29.60 68.60 2.03 45.97 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.13 5.54 5.05 86.38 0.44 5.98 16 13 C 0.10 4.03 3.52 30.59 0.11 4.14 16 14 H 0.08 3.36 6.64 -2.38 -0.02 3.34 16 15 O -0.56 -24.47 12.57 -144.31 -1.81 -26.28 16 16 C 0.04 1.37 4.37 71.98 0.31 1.68 16 17 O -0.32 -11.16 9.15 -87.78 -0.80 -11.96 16 18 C 0.11 3.31 6.66 22.51 0.15 3.46 16 19 C -0.22 -6.20 8.69 22.37 0.19 -6.01 16 20 C -0.06 -1.39 5.88 -19.88 -0.12 -1.51 16 21 C -0.11 -1.86 10.01 71.24 0.71 -1.14 16 22 C -0.16 -3.18 9.70 22.28 0.22 -2.96 16 23 C -0.08 -1.68 9.70 22.25 0.22 -1.47 16 24 C -0.15 -3.88 5.89 -19.77 -0.12 -4.00 16 25 C -0.10 -2.41 9.79 71.24 0.70 -1.71 16 26 H 0.04 1.53 6.64 -2.38 -0.02 1.51 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.03 1.50 8.08 -2.39 -0.02 1.48 16 30 H 0.05 1.92 7.83 -2.38 -0.02 1.90 16 31 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.08 3.73 5.52 -2.39 -0.01 3.72 16 33 H 0.04 1.81 7.86 -2.39 -0.02 1.79 16 34 H 0.37 15.50 9.05 -74.05 -0.67 14.83 16 35 H 0.08 2.33 7.65 -2.39 -0.02 2.31 16 36 H 0.06 2.02 7.68 -2.39 -0.02 2.01 16 37 H 0.13 3.39 6.30 -2.91 -0.02 3.37 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 40 H 0.08 1.07 8.09 -2.38 -0.02 1.05 16 41 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 45 H 0.05 1.41 7.53 -2.39 -0.02 1.39 16 Total: -1.00 -63.21 366.11 3.55 -59.65 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.30 Total: 29.46 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.26 Total: -15.66 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -1.42 Total: -81.19 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -2.62 Total: -38.24 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -63.21 3.55 -59.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299517051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.463 kcal (2) G-P(sol) polarization free energy of solvation -63.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds