Wall clock time and date at job start Tue Mar 31 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47396 * 2 1 4 4 C 1.36942 * 119.99560 * 84.69748 * 3 2 1 5 5 H 1.07999 * 119.99584 * 321.24751 * 4 3 2 6 6 C 1.38815 * 119.99999 * 141.25622 * 4 3 2 7 7 N 1.31618 * 119.99809 * 338.92610 * 6 4 3 8 8 Si 1.86800 * 120.00039 * 158.92568 * 6 4 3 9 9 H 1.48494 * 109.47229 * 89.99649 * 8 6 4 10 10 H 1.48495 * 109.47208 * 210.00130 * 8 6 4 11 11 H 1.48503 * 109.46791 * 329.99938 * 8 6 4 12 12 C 1.46497 * 120.00427 * 264.41869 * 3 2 1 13 13 C 1.52991 * 109.47289 * 89.99816 * 12 3 2 14 14 H 1.09000 * 109.47200 * 305.00352 * 13 12 3 15 15 O 1.42903 * 109.46870 * 65.00010 * 13 12 3 16 16 C 1.53000 * 109.47585 * 185.00197 * 13 12 3 17 17 O 1.42896 * 109.47680 * 175.00083 * 16 13 12 18 18 C 1.35900 * 117.00289 * 180.02562 * 17 16 13 19 19 C 1.38751 * 120.05600 * 359.72657 * 18 17 16 20 20 C 1.38123 * 119.94508 * 179.74593 * 19 18 17 21 21 C 1.50703 * 119.97087 * 180.25578 * 20 19 18 22 22 C 1.38290 * 120.05322 * 0.50678 * 20 19 18 23 23 C 1.38241 * 120.10917 * 359.76822 * 22 20 19 24 24 C 1.38165 * 120.06030 * 359.97438 * 23 22 20 25 25 C 1.50701 * 120.02607 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47481 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46909 * 299.99869 * 1 2 3 28 28 H 1.09003 * 109.47030 * 59.99182 * 1 2 3 29 29 H 1.09001 * 109.46909 * 240.00131 * 2 1 3 30 30 H 1.09003 * 109.47030 * 120.00818 * 2 1 3 31 31 H 0.96998 * 119.99569 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47244 * 210.00479 * 12 3 2 33 33 H 1.09005 * 109.46494 * 329.99957 * 12 3 2 34 34 H 0.96696 * 113.99929 * 60.00618 * 15 13 12 35 35 H 1.09002 * 109.47165 * 295.00263 * 16 13 12 36 36 H 1.09005 * 109.46673 * 55.00005 * 16 13 12 37 37 H 1.08008 * 120.02764 * 359.97233 * 19 18 17 38 38 H 1.08997 * 109.46615 * 270.24910 * 21 20 19 39 39 H 1.08999 * 109.47231 * 30.25454 * 21 20 19 40 40 H 1.08999 * 109.46959 * 150.25338 * 21 20 19 41 41 H 1.07991 * 119.93895 * 179.74904 * 22 20 19 42 42 H 1.08004 * 119.96943 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.46803 * 270.02145 * 25 24 23 44 44 H 1.08990 * 109.47314 * 30.02389 * 25 24 23 45 45 H 1.09001 * 109.46699 * 150.02471 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0631 1.1809 5 1 1.4005 1.9420 1.9555 6 6 3.2245 2.9102 1.3823 7 7 4.3181 2.7632 0.6649 8 14 3.1272 4.2587 2.6713 9 1 3.6128 3.7349 3.9732 10 1 3.9725 5.4055 2.2527 11 1 1.7187 4.7075 2.8127 12 6 2.3789 2.0307 -1.2626 13 6 1.1510 2.7354 -1.8425 14 1 0.3338 2.0206 -1.9393 15 8 0.7550 3.7965 -0.9711 16 6 1.4940 3.3073 -3.2195 17 8 0.3179 3.8632 -3.8109 18 6 0.4503 4.4163 -5.0452 19 6 1.6881 4.4290 -5.6719 20 6 1.8190 4.9870 -6.9286 21 6 3.1620 4.9959 -7.6122 22 6 0.7197 5.5422 -7.5577 23 6 -0.5134 5.5359 -6.9330 24 6 -0.6507 4.9741 -5.6782 25 6 -1.9953 4.9682 -4.9976 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 5.0737 3.3549 0.8058 32 1 3.1667 2.7623 -1.0829 33 1 2.7344 1.2801 -1.9687 34 1 1.4350 4.4711 -0.8386 35 1 2.2492 4.0859 -3.1117 36 1 1.8803 2.5122 -3.8572 37 1 2.5479 3.9995 -5.1790 38 1 3.6985 5.9069 -7.3470 39 1 3.7386 4.1282 -7.2918 40 1 3.0201 4.9592 -8.6923 41 1 0.8250 5.9816 -8.5386 42 1 -1.3704 5.9704 -7.4263 43 1 -2.1059 5.8755 -4.4037 44 1 -2.7830 4.9279 -5.7497 45 1 -2.0692 4.0968 -4.3470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299517052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:37 Heat of formation + Delta-G solvation = -57.884190 kcal Electronic energy + Delta-G solvation = -24060.670779 eV Core-core repulsion = 20657.693293 eV Total energy + Delta-G solvation = -3402.977486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19592 -37.96655 -36.69458 -34.81707 -33.74111 -31.86435 -30.54306 -29.79699 -29.21454 -28.51343 -25.77260 -24.71660 -23.75374 -22.23581 -21.26082 -20.57520 -20.20395 -17.57021 -16.71849 -16.23009 -15.99844 -15.54022 -15.21128 -14.76361 -14.33134 -14.19220 -13.76405 -13.75139 -13.44106 -13.35358 -12.99840 -12.89356 -12.81295 -12.53598 -12.36305 -11.86035 -11.83072 -11.56066 -11.40941 -11.27846 -11.14271 -10.90284 -10.74083 -10.64735 -10.53055 -10.23423 -10.09234 -9.93487 -9.70873 -9.19627 -8.68905 -8.48099 -7.95176 -6.55771 -5.80314 -3.37208 1.30927 1.49632 3.33256 3.41540 3.44471 3.51318 3.73578 4.48948 4.71140 4.78727 4.99958 5.09523 5.13557 5.19086 5.25392 5.35299 5.47231 5.48665 5.49156 5.54499 5.65235 5.70332 5.75225 5.78757 5.83173 5.95977 6.01866 6.17774 6.27939 6.29746 6.36302 6.40193 6.49084 6.51579 6.59436 6.62879 6.73754 6.88081 6.92202 7.17437 7.43982 7.61975 7.84001 8.47806 8.55121 9.17039 9.78560 10.37370 11.20158 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.003943 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.349818 B = 7098.953508 C = 7488.439719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.574 5.574 4 C -0.238 4.238 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.896 5.896 8 Si 0.893 3.107 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.275 1.275 12 C 0.123 3.877 13 C 0.091 3.909 14 H 0.090 0.910 15 O -0.539 6.539 16 C 0.027 3.973 17 O -0.300 6.300 18 C 0.140 3.860 19 C -0.209 4.209 20 C -0.054 4.054 21 C -0.115 4.115 22 C -0.164 4.164 23 C -0.082 4.082 24 C -0.128 4.128 25 C -0.103 4.103 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.253 0.747 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.365 0.635 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 3.533 -15.650 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.294 5.294 4 C -0.368 4.368 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.539 5.539 8 Si 0.722 3.278 9 H -0.214 1.214 10 H -0.216 1.216 11 H -0.200 1.200 12 C -0.004 4.004 13 C 0.028 3.972 14 H 0.108 0.892 15 O -0.342 6.342 16 C -0.050 4.050 17 O -0.213 6.213 18 C 0.093 3.907 19 C -0.228 4.228 20 C -0.055 4.055 21 C -0.171 4.171 22 C -0.183 4.183 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.160 4.160 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.211 0.789 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.914 3.214 -15.453 16.855 hybrid contribution 0.826 1.054 0.429 1.406 sum -5.088 4.268 -15.023 16.426 Atomic orbital electron populations 1.22366 0.99881 0.98861 1.01444 1.20888 0.91837 0.87070 0.98817 1.43558 1.75596 1.08118 1.02101 1.18914 1.03068 1.21051 0.93783 0.92476 1.25123 0.94234 1.01362 0.98199 1.70008 1.02688 1.38147 1.43053 0.86452 0.77797 0.82010 0.81496 1.21406 1.21605 1.20030 1.21452 0.94443 0.97514 0.87040 1.23014 1.01221 0.89358 0.83565 0.89202 1.86554 1.43402 1.36093 1.68142 1.23925 0.86613 0.97550 0.96871 1.86206 1.36287 1.71098 1.27695 1.18976 0.93244 0.93066 0.85397 1.21183 0.97010 1.07409 0.97199 1.19673 0.95675 0.96359 0.93748 1.20802 0.93716 1.02583 1.00035 1.20830 0.92625 1.04109 1.00709 1.20807 0.97468 0.98069 0.93711 1.19274 0.94925 1.03061 0.95631 1.20576 0.92374 1.03042 0.99968 0.94585 0.93026 0.93812 0.94863 0.93614 0.93681 0.88432 0.94897 0.78931 0.92050 0.91910 0.85399 0.91084 0.91485 0.91563 0.86323 0.85763 0.91535 0.92133 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.21 37.16 0.38 -2.72 16 2 C 0.14 2.94 6.44 -4.04 -0.03 2.91 16 3 N -0.57 -13.82 2.41 -173.25 -0.42 -14.24 16 4 C -0.24 -6.35 8.96 -15.06 -0.13 -6.49 16 5 H 0.06 1.57 7.91 -52.49 -0.42 1.16 16 6 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 7 N -0.90 -24.67 11.52 55.49 0.64 -24.03 16 8 Si 0.89 21.18 29.60 -169.99 -5.03 16.15 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.12 2.69 5.01 -4.05 -0.02 2.67 16 13 C 0.09 1.77 3.49 -26.74 -0.09 1.67 16 14 H 0.09 1.81 6.50 -51.93 -0.34 1.47 16 15 O -0.54 -11.55 12.79 -40.07 -0.51 -12.07 16 16 C 0.03 0.44 4.37 37.16 0.16 0.60 16 17 O -0.30 -5.13 9.15 -24.27 -0.22 -5.35 16 18 C 0.14 2.15 6.66 -39.22 -0.26 1.89 16 19 C -0.21 -2.93 8.69 -39.43 -0.34 -3.27 16 20 C -0.05 -0.66 5.88 -104.64 -0.62 -1.28 16 21 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 22 C -0.16 -1.87 9.70 -39.56 -0.38 -2.25 16 23 C -0.08 -0.97 9.70 -39.61 -0.38 -1.35 16 24 C -0.13 -1.77 5.89 -104.47 -0.62 -2.38 16 25 C -0.10 -1.27 9.79 36.01 0.35 -0.92 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.81 6.50 -51.93 -0.34 0.48 16 29 H 0.03 0.64 7.83 -51.93 -0.41 0.24 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.10 2.37 5.57 -51.93 -0.29 2.08 16 33 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 34 H 0.36 7.26 9.04 45.56 0.41 7.67 16 35 H 0.06 0.98 7.65 -51.93 -0.40 0.58 16 36 H 0.06 0.94 7.67 -51.93 -0.40 0.54 16 37 H 0.13 1.70 6.30 -52.48 -0.33 1.37 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 45 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -29.62 366.25 -8.38 -38.00 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.65 Total: 7.47 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.71 Total: -11.45 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.22 Total: -38.27 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.73 Total: -17.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.62 -8.38 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299517052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.880 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds