Wall clock time and date at job start Tue Mar 31 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47396 * 2 1 4 4 C 1.36942 * 119.99560 * 84.69748 * 3 2 1 5 5 H 1.07999 * 119.99584 * 321.24751 * 4 3 2 6 6 C 1.38815 * 119.99999 * 141.25622 * 4 3 2 7 7 N 1.31618 * 119.99809 * 338.92610 * 6 4 3 8 8 Si 1.86800 * 120.00039 * 158.92568 * 6 4 3 9 9 H 1.48494 * 109.47229 * 89.99649 * 8 6 4 10 10 H 1.48495 * 109.47208 * 210.00130 * 8 6 4 11 11 H 1.48503 * 109.46791 * 329.99938 * 8 6 4 12 12 C 1.46497 * 120.00427 * 264.41869 * 3 2 1 13 13 C 1.52991 * 109.47289 * 89.99816 * 12 3 2 14 14 H 1.09000 * 109.47200 * 305.00352 * 13 12 3 15 15 O 1.42903 * 109.46870 * 65.00010 * 13 12 3 16 16 C 1.53000 * 109.47585 * 185.00197 * 13 12 3 17 17 O 1.42896 * 109.47680 * 175.00083 * 16 13 12 18 18 C 1.35900 * 117.00289 * 180.02562 * 17 16 13 19 19 C 1.38751 * 120.05600 * 359.72657 * 18 17 16 20 20 C 1.38123 * 119.94508 * 179.74593 * 19 18 17 21 21 C 1.50703 * 119.97087 * 180.25578 * 20 19 18 22 22 C 1.38290 * 120.05322 * 0.50678 * 20 19 18 23 23 C 1.38241 * 120.10917 * 359.76822 * 22 20 19 24 24 C 1.38165 * 120.06030 * 359.97438 * 23 22 20 25 25 C 1.50701 * 120.02607 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47481 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46909 * 299.99869 * 1 2 3 28 28 H 1.09003 * 109.47030 * 59.99182 * 1 2 3 29 29 H 1.09001 * 109.46909 * 240.00131 * 2 1 3 30 30 H 1.09003 * 109.47030 * 120.00818 * 2 1 3 31 31 H 0.96998 * 119.99569 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47244 * 210.00479 * 12 3 2 33 33 H 1.09005 * 109.46494 * 329.99957 * 12 3 2 34 34 H 0.96696 * 113.99929 * 60.00618 * 15 13 12 35 35 H 1.09002 * 109.47165 * 295.00263 * 16 13 12 36 36 H 1.09005 * 109.46673 * 55.00005 * 16 13 12 37 37 H 1.08008 * 120.02764 * 359.97233 * 19 18 17 38 38 H 1.08997 * 109.46615 * 270.24910 * 21 20 19 39 39 H 1.08999 * 109.47231 * 30.25454 * 21 20 19 40 40 H 1.08999 * 109.46959 * 150.25338 * 21 20 19 41 41 H 1.07991 * 119.93895 * 179.74904 * 22 20 19 42 42 H 1.08004 * 119.96943 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.46803 * 270.02145 * 25 24 23 44 44 H 1.08990 * 109.47314 * 30.02389 * 25 24 23 45 45 H 1.09001 * 109.46699 * 150.02471 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0631 1.1809 5 1 1.4005 1.9420 1.9555 6 6 3.2245 2.9102 1.3823 7 7 4.3181 2.7632 0.6649 8 14 3.1272 4.2587 2.6713 9 1 3.6128 3.7349 3.9732 10 1 3.9725 5.4055 2.2527 11 1 1.7187 4.7075 2.8127 12 6 2.3789 2.0307 -1.2626 13 6 1.1510 2.7354 -1.8425 14 1 0.3338 2.0206 -1.9393 15 8 0.7550 3.7965 -0.9711 16 6 1.4940 3.3073 -3.2195 17 8 0.3179 3.8632 -3.8109 18 6 0.4503 4.4163 -5.0452 19 6 1.6881 4.4290 -5.6719 20 6 1.8190 4.9870 -6.9286 21 6 3.1620 4.9959 -7.6122 22 6 0.7197 5.5422 -7.5577 23 6 -0.5134 5.5359 -6.9330 24 6 -0.6507 4.9741 -5.6782 25 6 -1.9953 4.9682 -4.9976 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 5.0737 3.3549 0.8058 32 1 3.1667 2.7623 -1.0829 33 1 2.7344 1.2801 -1.9687 34 1 1.4350 4.4711 -0.8386 35 1 2.2492 4.0859 -3.1117 36 1 1.8803 2.5122 -3.8572 37 1 2.5479 3.9995 -5.1790 38 1 3.6985 5.9069 -7.3470 39 1 3.7386 4.1282 -7.2918 40 1 3.0201 4.9592 -8.6923 41 1 0.8250 5.9816 -8.5386 42 1 -1.3704 5.9704 -7.4263 43 1 -2.1059 5.8755 -4.4037 44 1 -2.7830 4.9279 -5.7497 45 1 -2.0692 4.0968 -4.3470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299517052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:37 Heat of formation + Delta-G solvation = -74.681229 kcal Electronic energy + Delta-G solvation = -24061.399153 eV Core-core repulsion = 20657.693293 eV Total energy + Delta-G solvation = -3403.705860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28225 -39.32082 -38.14861 -36.53720 -34.68079 -33.80718 -32.02056 -30.97973 -30.14907 -30.08157 -27.41464 -25.76440 -25.34771 -23.46207 -22.52138 -22.12294 -21.62490 -19.05560 -18.22225 -17.64981 -17.34141 -16.85024 -16.55359 -16.27912 -15.89805 -15.47705 -15.30882 -15.15681 -14.85940 -14.40959 -14.10962 -14.06877 -14.05200 -13.77135 -13.46396 -13.43094 -13.16998 -13.00028 -12.69999 -12.62516 -12.60476 -12.36983 -12.20332 -12.08550 -12.01030 -11.78768 -11.75494 -11.61871 -11.38579 -10.84357 -10.49106 -9.65125 -8.98564 -8.50931 -7.80565 -5.41984 0.35347 0.50308 1.44500 1.49526 1.60432 2.17459 2.54399 2.77055 3.26493 3.55828 3.68390 3.79687 3.88468 4.00291 4.09254 4.13055 4.24791 4.32974 4.39287 4.43985 4.50725 4.66984 4.69409 4.77696 4.77900 4.80635 4.82211 4.83348 4.84505 4.88874 5.04109 5.08923 5.15546 5.28498 5.37070 5.41361 5.55211 5.56842 5.63799 5.66377 5.73841 5.93610 6.46768 6.50812 6.89834 7.20439 7.86114 8.39743 9.15304 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.003943 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.349818 B = 7098.953508 C = 7488.439719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 N -0.592 5.592 4 C -0.246 4.246 5 H 0.042 0.958 6 C -0.025 4.025 7 N -0.918 5.918 8 Si 0.948 3.052 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.128 3.872 13 C 0.102 3.898 14 H 0.084 0.916 15 O -0.557 6.557 16 C 0.040 3.960 17 O -0.319 6.319 18 C 0.107 3.893 19 C -0.224 4.224 20 C -0.062 4.062 21 C -0.114 4.114 22 C -0.161 4.161 23 C -0.081 4.081 24 C -0.146 4.146 25 C -0.100 4.100 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.369 0.631 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 4.164 -17.860 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.312 5.312 4 C -0.377 4.377 5 H 0.060 0.940 6 C -0.222 4.222 7 N -0.563 5.563 8 Si 0.777 3.223 9 H -0.215 1.215 10 H -0.213 1.213 11 H -0.204 1.204 12 C 0.001 3.999 13 C 0.040 3.960 14 H 0.101 0.899 15 O -0.361 6.361 16 C -0.036 4.036 17 O -0.233 6.233 18 C 0.062 3.938 19 C -0.242 4.242 20 C -0.062 4.062 21 C -0.170 4.170 22 C -0.179 4.179 23 C -0.099 4.099 24 C -0.147 4.147 25 C -0.157 4.157 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.215 0.785 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.430 3.836 -17.679 19.200 hybrid contribution 0.954 0.839 1.016 1.627 sum -5.476 4.676 -16.664 18.153 Atomic orbital electron populations 1.22188 0.97981 1.00635 1.00332 1.21019 0.93248 0.85713 0.99114 1.43781 1.76024 1.09360 1.02079 1.18959 1.02584 1.21653 0.94516 0.94048 1.25604 0.93950 1.02778 0.99900 1.70097 1.03060 1.38774 1.44340 0.85606 0.77313 0.79916 0.79506 1.21503 1.21281 1.20387 1.21359 0.94671 0.97268 0.86621 1.22725 0.99621 0.88800 0.84818 0.89855 1.86515 1.43997 1.36645 1.68974 1.23589 0.86580 0.97982 0.95422 1.86130 1.36186 1.71935 1.29066 1.19294 0.94638 0.94782 0.85097 1.21317 0.96494 1.08198 0.98230 1.20064 0.97408 0.95576 0.93133 1.20857 0.92197 1.02960 1.00994 1.21258 0.92040 1.02892 1.01718 1.21187 0.98830 0.97059 0.92774 1.19596 0.94939 1.03477 0.96644 1.20562 0.92807 1.01979 1.00304 0.91328 0.94987 0.93963 0.93076 0.94735 0.93871 0.90807 0.93736 0.78490 0.91932 0.90467 0.85603 0.90321 0.91504 0.89544 0.83272 0.82796 0.91634 0.89550 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 10.21 71.98 0.73 -4.82 16 2 C 0.13 5.60 6.44 86.38 0.56 6.15 16 3 N -0.59 -28.80 2.41 -702.03 -1.69 -30.49 16 4 C -0.25 -13.37 8.96 84.03 0.75 -12.62 16 5 H 0.04 2.34 7.91 -2.91 -0.02 2.32 16 6 C -0.03 -1.37 4.95 84.86 0.42 -0.95 16 7 N -0.92 -51.18 11.52 21.65 0.25 -50.93 16 8 Si 0.95 44.18 29.60 68.60 2.03 46.21 16 9 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 C 0.13 5.64 5.01 86.38 0.43 6.07 16 13 C 0.10 4.02 3.49 30.59 0.11 4.12 16 14 H 0.08 3.39 6.50 -2.39 -0.02 3.37 16 15 O -0.56 -24.41 12.79 -144.35 -1.85 -26.25 16 16 C 0.04 1.34 4.37 71.98 0.31 1.66 16 17 O -0.32 -11.09 9.15 -87.79 -0.80 -11.89 16 18 C 0.11 3.29 6.66 22.50 0.15 3.44 16 19 C -0.22 -6.11 8.69 22.37 0.19 -5.92 16 20 C -0.06 -1.37 5.88 -19.88 -0.12 -1.49 16 21 C -0.11 -1.82 10.01 71.24 0.71 -1.11 16 22 C -0.16 -3.15 9.70 22.28 0.22 -2.93 16 23 C -0.08 -1.67 9.70 22.25 0.22 -1.46 16 24 C -0.15 -3.87 5.89 -19.77 -0.12 -3.98 16 25 C -0.10 -2.39 9.79 71.24 0.70 -1.69 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.54 6.50 -2.39 -0.02 1.52 16 29 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 30 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 32 H 0.07 3.66 5.57 -2.39 -0.01 3.65 16 33 H 0.04 1.81 7.86 -2.38 -0.02 1.80 16 34 H 0.37 15.12 9.04 -74.06 -0.67 14.45 16 35 H 0.06 2.04 7.65 -2.39 -0.02 2.02 16 36 H 0.08 2.30 7.67 -2.38 -0.02 2.28 16 37 H 0.13 3.34 6.30 -2.91 -0.02 3.33 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 40 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 45 H 0.05 1.42 7.53 -2.39 -0.02 1.40 16 Total: -1.00 -63.82 366.25 3.51 -60.30 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.30 Total: 28.58 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.27 Total: -15.53 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.44 Total: -81.42 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -2.65 Total: -38.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -63.82 3.51 -60.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299517052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.380 kcal (2) G-P(sol) polarization free energy of solvation -63.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds