Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46822 * 2 1 4 4 C 1.36935 * 119.99854 * 275.30722 * 3 2 1 5 5 H 1.08003 * 120.00265 * 37.72620 * 4 3 2 6 6 C 1.38816 * 119.99774 * 217.72995 * 4 3 2 7 7 N 1.31614 * 120.00480 * 21.24275 * 6 4 3 8 8 Si 1.86800 * 119.99860 * 201.25025 * 6 4 3 9 9 H 1.48498 * 109.47636 * 59.99166 * 8 6 4 10 10 H 1.48499 * 109.47332 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46941 * 299.99252 * 8 6 4 12 12 C 1.46501 * 120.00034 * 95.30768 * 3 2 1 13 13 C 1.53005 * 109.46922 * 269.99746 * 12 3 2 14 14 H 1.08998 * 109.47055 * 60.00518 * 13 12 3 15 15 O 1.42901 * 109.47060 * 299.99938 * 13 12 3 16 16 C 1.53002 * 109.46914 * 179.97438 * 13 12 3 17 17 O 1.42893 * 109.46952 * 184.99663 * 16 13 12 18 18 C 1.35909 * 116.99737 * 179.97438 * 17 16 13 19 19 C 1.38750 * 120.05495 * 359.72999 * 18 17 16 20 20 C 1.38123 * 119.94198 * 179.69677 * 19 18 17 21 21 C 1.38289 * 120.05422 * 0.60039 * 20 19 18 22 22 C 1.50699 * 119.94469 * 179.70123 * 21 20 19 23 23 C 1.38245 * 120.11203 * 359.67381 * 21 20 19 24 24 C 1.38166 * 120.05241 * 0.02676 * 23 21 20 25 25 C 1.50706 * 120.02466 * 179.97438 * 24 23 21 26 26 H 1.09007 * 109.46752 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47370 * 299.99852 * 1 2 3 28 28 H 1.09000 * 109.47325 * 60.00198 * 1 2 3 29 29 H 1.09003 * 109.47054 * 239.99715 * 2 1 3 30 30 H 1.08994 * 109.46734 * 120.00153 * 2 1 3 31 31 H 0.96994 * 120.00420 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47052 * 149.99631 * 12 3 2 33 33 H 1.08997 * 109.46830 * 29.99668 * 12 3 2 34 34 H 0.96700 * 114.00021 * 299.99695 * 15 13 12 35 35 H 1.09001 * 109.47427 * 305.00339 * 16 13 12 36 36 H 1.09000 * 109.46957 * 64.99780 * 16 13 12 37 37 H 1.08004 * 120.03105 * 359.97438 * 19 18 17 38 38 H 1.07996 * 119.97184 * 180.30154 * 20 19 18 39 39 H 1.09001 * 109.46818 * 269.97743 * 22 21 20 40 40 H 1.09005 * 109.47085 * 29.97457 * 22 21 20 41 41 H 1.08995 * 109.47331 * 149.97773 * 22 21 20 42 42 H 1.07999 * 119.96999 * 180.02562 * 23 21 20 43 43 H 1.09000 * 109.47602 * 270.02494 * 25 24 23 44 44 H 1.09000 * 109.46608 * 30.02690 * 25 24 23 45 45 H 1.09002 * 109.46784 * 150.01804 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4092 1.9296 -1.9619 6 6 3.2129 2.9266 -1.3740 7 7 4.3036 2.7954 -0.6492 8 14 3.1043 4.2746 -2.6626 9 1 1.9690 5.1763 -2.3414 10 1 4.3681 5.0543 -2.6711 11 1 2.8893 3.6651 -3.9996 12 6 2.3731 2.0327 1.2633 13 6 1.1424 2.7383 1.8365 14 1 0.3540 2.0069 2.0138 15 8 0.6806 3.7207 0.9071 16 6 1.5128 3.4182 3.1561 17 8 0.3394 3.9778 3.7493 18 6 0.4951 4.6221 4.9358 19 6 1.7507 4.7088 5.5199 20 6 1.9074 5.3695 6.7227 21 6 0.8122 5.9335 7.3509 22 6 0.9849 6.6480 8.6664 23 6 -0.4409 5.8435 6.7738 24 6 -0.6018 5.1890 5.5677 25 6 -1.9681 5.0908 4.9394 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.0509 3.3989 -0.7839 32 1 3.1616 2.7642 1.0860 33 1 2.7253 1.2834 1.9721 34 1 1.3322 4.4052 0.7020 35 1 1.9476 2.6836 3.8339 36 1 2.2369 4.2104 2.9660 37 1 2.6056 4.2640 5.0322 38 1 2.8853 5.4415 7.1753 39 1 0.8592 5.9386 9.4844 40 1 1.9823 7.0850 8.7144 41 1 0.2380 7.4372 8.7521 42 1 -1.2946 6.2852 7.2662 43 1 -2.4646 4.1856 5.2890 44 1 -2.5604 5.9617 5.2201 45 1 -1.8674 5.0542 3.8547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000303264832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = -73.891725 kcal Electronic energy + Delta-G solvation = -23972.167270 eV Core-core repulsion = 20568.495645 eV Total energy + Delta-G solvation = -3403.671625 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26610 -39.34142 -38.19166 -36.50304 -34.14856 -33.79809 -32.51168 -31.85553 -30.27515 -28.12482 -27.65957 -26.64552 -25.40741 -23.42469 -22.17045 -22.05871 -21.53072 -19.21017 -18.51705 -17.64548 -17.40470 -16.82913 -16.46324 -15.89725 -15.78619 -15.46590 -15.38844 -15.13392 -14.95232 -14.46525 -14.10983 -14.08816 -13.99245 -13.86493 -13.43767 -13.33854 -13.16186 -12.97858 -12.72904 -12.66574 -12.58304 -12.37585 -12.21270 -12.08127 -11.99690 -11.77722 -11.69659 -11.58694 -11.37696 -10.82482 -10.48299 -9.76655 -8.90218 -8.51159 -7.79566 -5.40015 0.36642 0.46720 1.47288 1.50928 1.58206 2.18690 2.54930 2.75819 3.26600 3.56315 3.70368 3.83335 3.87901 4.00749 4.02997 4.11236 4.30323 4.37712 4.40232 4.44103 4.50250 4.64583 4.67644 4.71343 4.79595 4.80019 4.83854 4.85326 4.90246 5.01637 5.05846 5.09269 5.15484 5.29021 5.34853 5.40685 5.52091 5.57597 5.64655 5.68159 5.74322 5.92933 6.46933 6.50913 6.89674 7.20879 7.86979 8.40358 9.16147 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.003752 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.225320 B = 7460.402823 C = 7954.158440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.591 5.591 4 C -0.243 4.243 5 H 0.042 0.958 6 C -0.029 4.029 7 N -0.918 5.918 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.293 1.293 11 H -0.283 1.283 12 C 0.125 3.875 13 C 0.102 3.898 14 H 0.084 0.916 15 O -0.555 6.555 16 C 0.040 3.960 17 O -0.320 6.320 18 C 0.097 3.903 19 C -0.215 4.215 20 C -0.094 4.094 21 C -0.129 4.129 22 C -0.105 4.105 23 C -0.088 4.088 24 C -0.133 4.133 25 C -0.101 4.101 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.252 0.748 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.368 0.632 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.151 0.849 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 5.187 17.769 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.311 5.311 4 C -0.374 4.374 5 H 0.060 0.940 6 C -0.225 4.225 7 N -0.563 5.563 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.219 1.219 11 H -0.209 1.209 12 C -0.002 4.002 13 C 0.040 3.960 14 H 0.101 0.899 15 O -0.359 6.359 16 C -0.036 4.036 17 O -0.234 6.234 18 C 0.052 3.948 19 C -0.234 4.234 20 C -0.112 4.112 21 C -0.130 4.130 22 C -0.161 4.161 23 C -0.106 4.106 24 C -0.133 4.133 25 C -0.158 4.158 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.214 0.786 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.169 0.831 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.228 4.831 17.640 19.666 hybrid contribution 1.012 0.797 -1.051 1.662 sum -6.217 5.628 16.589 18.588 Atomic orbital electron populations 1.22181 0.97981 1.00564 1.00347 1.21017 0.93247 0.85709 0.99114 1.43763 1.76041 1.09284 1.02048 1.18932 1.03285 1.20945 0.94215 0.93995 1.25595 0.93974 1.02940 1.00037 1.70083 1.03588 1.38329 1.44264 0.85664 0.76487 0.80317 0.79844 1.20436 1.21867 1.20935 1.21386 0.94829 0.97324 0.86646 1.22698 0.99016 0.89705 0.84558 0.89859 1.86501 1.43713 1.40711 1.65000 1.23588 0.86664 0.97708 0.95646 1.86126 1.35498 1.68468 1.33260 1.19291 0.94608 0.94763 0.86177 1.21447 0.96243 1.06282 0.99438 1.21107 0.99763 0.96362 0.93967 1.20189 0.92866 1.01022 0.98877 1.20746 1.03321 0.99741 0.92306 1.21057 0.98058 0.98060 0.93418 1.19588 0.94884 1.02013 0.96859 1.20588 0.92252 1.02915 1.00052 0.91399 0.93989 0.94990 0.94708 0.93088 0.93918 0.90636 0.93749 0.78594 0.90390 0.92069 0.85342 0.83983 0.90472 0.90930 0.90563 0.83109 0.91035 0.89727 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 10.21 71.98 0.73 -4.80 16 2 C 0.13 5.59 6.44 86.38 0.56 6.15 16 3 N -0.59 -28.64 2.38 -701.98 -1.67 -30.31 16 4 C -0.24 -13.10 8.80 84.03 0.74 -12.36 16 5 H 0.04 2.36 7.92 -2.91 -0.02 2.33 16 6 C -0.03 -1.54 4.96 84.86 0.42 -1.12 16 7 N -0.92 -51.04 11.47 21.65 0.25 -50.80 16 8 Si 0.95 43.96 29.60 68.60 2.03 45.99 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 C 0.13 5.51 5.05 86.38 0.44 5.95 16 13 C 0.10 4.01 3.52 30.60 0.11 4.12 16 14 H 0.08 3.35 6.64 -2.39 -0.02 3.33 16 15 O -0.56 -24.41 12.58 -144.36 -1.82 -26.23 16 16 C 0.04 1.34 4.38 71.98 0.31 1.65 16 17 O -0.32 -11.10 9.15 -87.91 -0.80 -11.91 16 18 C 0.10 2.97 6.66 22.50 0.15 3.12 16 19 C -0.22 -5.88 9.04 22.36 0.20 -5.68 16 20 C -0.09 -2.11 9.69 22.25 0.22 -1.89 16 21 C -0.13 -2.60 5.88 -19.85 -0.12 -2.72 16 22 C -0.10 -1.35 10.01 71.24 0.71 -0.63 16 23 C -0.09 -1.88 9.35 22.25 0.21 -1.67 16 24 C -0.13 -3.54 5.89 -19.77 -0.12 -3.66 16 25 C -0.10 -2.42 9.79 71.24 0.70 -1.73 16 26 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.04 1.53 6.64 -2.39 -0.02 1.52 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.03 1.50 8.08 -2.39 -0.02 1.48 16 30 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 31 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.08 3.74 5.52 -2.39 -0.01 3.72 16 33 H 0.04 1.81 7.86 -2.39 -0.02 1.79 16 34 H 0.37 15.47 9.05 -74.06 -0.67 14.80 16 35 H 0.08 2.32 7.65 -2.39 -0.02 2.30 16 36 H 0.06 2.02 7.68 -2.39 -0.02 2.00 16 37 H 0.13 3.37 6.30 -2.91 -0.02 3.35 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.82 8.08 -2.38 -0.02 0.80 16 41 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 42 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 45 H 0.05 1.44 7.53 -2.39 -0.02 1.42 16 Total: -1.00 -62.96 366.11 3.55 -59.41 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.30 Total: 29.11 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.26 Total: -15.27 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.42 Total: -81.11 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -2.62 Total: -38.14 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.96 3.55 -59.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303264832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.482 kcal (2) G-P(sol) polarization free energy of solvation -62.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds