Wall clock time and date at job start Tue Mar 31 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00116 * 2 1 4 4 C 1.38730 * 120.06006 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94990 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05250 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94241 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47547 * 342.27615 * 7 6 5 9 9 C 1.53007 * 109.46999 * 102.27853 * 7 6 5 10 10 O 1.42904 * 109.47152 * 56.13576 * 9 7 6 11 11 N 1.46900 * 109.47157 * 222.27217 * 7 6 5 12 12 C 1.46891 * 111.00392 * 184.72097 * 11 7 6 13 13 C 1.46904 * 110.99452 * 60.77116 * 11 7 6 14 14 C 1.53005 * 109.46977 * 189.99786 * 13 11 7 15 15 C 1.53001 * 109.47093 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47134 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00227 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00202 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00153 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47052 * 89.99883 * 20 18 16 22 22 H 1.48502 * 109.47278 * 210.00396 * 20 18 16 23 23 H 1.48502 * 109.46846 * 330.00302 * 20 18 16 24 24 C 1.38271 * 120.11109 * 0.27251 * 6 5 4 25 25 C 1.38143 * 120.05397 * 359.45904 * 24 6 5 26 26 H 1.09001 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47176 * 299.99805 * 1 2 3 28 28 H 1.08998 * 109.47298 * 60.00175 * 1 2 3 29 29 H 1.08003 * 120.02622 * 359.95280 * 4 3 2 30 30 H 1.07997 * 119.97382 * 180.02562 * 5 4 3 31 31 H 1.08992 * 109.47002 * 296.13349 * 9 7 6 32 32 H 1.09001 * 109.46726 * 176.13384 * 9 7 6 33 33 H 0.96693 * 113.99457 * 180.02562 * 10 9 7 34 34 H 1.09010 * 109.47140 * 66.02745 * 12 11 7 35 35 H 1.08998 * 109.47412 * 186.02620 * 12 11 7 36 36 H 1.09004 * 109.47662 * 306.03215 * 12 11 7 37 37 H 1.09003 * 109.47342 * 309.99663 * 13 11 7 38 38 H 1.08997 * 109.47063 * 70.00006 * 13 11 7 39 39 H 1.08990 * 109.47227 * 300.00289 * 14 13 11 40 40 H 1.09007 * 109.47156 * 60.00303 * 14 13 11 41 41 H 1.09000 * 109.47632 * 300.00563 * 15 14 13 42 42 H 1.08997 * 109.46771 * 60.00328 * 15 14 13 43 43 H 0.97002 * 119.99588 * 180.02562 * 19 18 16 44 44 H 1.07992 * 119.96981 * 179.70839 * 24 6 5 45 45 H 1.07997 * 120.03031 * 180.27751 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0185 -0.0028 8 1 5.0232 4.8981 0.3098 9 6 3.9437 5.6112 -1.4127 10 8 2.5878 5.6856 -1.8578 11 7 3.2956 5.9207 0.9285 12 6 3.8657 7.2733 0.8713 13 6 3.3320 5.3916 2.2984 14 6 2.4010 6.2171 3.1889 15 6 2.4385 5.6656 4.6156 16 6 1.5211 6.4782 5.4925 17 1 0.9663 7.3050 5.0740 18 6 1.3898 6.1662 6.8290 19 7 0.5887 6.8750 7.5942 20 14 2.3486 4.7356 7.5527 21 1 3.6611 5.2206 8.0502 22 1 1.5808 4.1437 8.6776 23 1 2.5661 3.7054 6.5056 24 6 1.9210 3.6048 0.0041 25 6 1.2915 2.3751 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 4.0208 0.3800 -0.0002 30 1 5.1345 2.5750 -0.0019 31 1 4.5144 4.9768 -2.0908 32 1 4.3772 6.6113 -1.3996 33 1 2.4852 6.0523 -2.7465 34 1 3.6679 7.7099 -0.1078 35 1 3.4101 7.8926 1.6439 36 1 4.9421 7.2213 1.0351 37 1 3.0044 4.3520 2.2953 38 1 4.3499 5.4506 2.6837 39 1 2.7286 7.2566 3.1920 40 1 1.3830 6.1581 2.8036 41 1 2.1107 4.6261 4.6121 42 1 3.4563 5.7242 5.0011 43 1 0.4967 6.6557 8.5346 44 1 1.3342 4.5114 0.0084 45 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304064359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:40 Heat of formation + Delta-G solvation = -57.124069 kcal Electronic energy + Delta-G solvation = -23984.183646 eV Core-core repulsion = 20581.239121 eV Total energy + Delta-G solvation = -3402.944525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25457 -38.87870 -36.79260 -36.16271 -33.70109 -31.90464 -30.97972 -30.75444 -28.45959 -27.59446 -26.57032 -25.39222 -22.89010 -22.41592 -21.65435 -19.91920 -19.82036 -18.11773 -17.53196 -16.66278 -16.30823 -16.09818 -15.75578 -15.33167 -14.62830 -14.56517 -14.18354 -13.98858 -13.86176 -13.56133 -13.39720 -12.95273 -12.70584 -12.63287 -12.52990 -12.15588 -11.93053 -11.82112 -11.51720 -11.43109 -11.08023 -10.86304 -10.77066 -10.68112 -10.53454 -9.99986 -9.87507 -9.59857 -9.50051 -9.10650 -8.85600 -8.48498 -8.06095 -7.99493 -5.99257 -3.96373 1.43290 1.56271 3.25606 3.34016 3.41355 3.46659 3.79789 4.08071 4.24660 4.50099 4.74155 4.87298 4.95901 5.06329 5.07451 5.13126 5.28732 5.33664 5.35408 5.35766 5.43488 5.48807 5.53155 5.58622 5.60770 5.79267 5.82005 5.95461 6.11948 6.18733 6.28638 6.33292 6.53347 6.62207 6.64472 6.80783 6.84854 6.98824 7.30900 7.33171 7.42322 7.44433 7.54145 7.63313 7.86260 8.60723 9.06642 9.63979 11.14381 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.004665 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.274514 B = 6001.237946 C = 7601.449308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.123 3.877 4 C -0.161 4.161 5 C -0.082 4.082 6 C -0.111 4.111 7 C 0.127 3.873 8 H 0.055 0.945 9 C 0.087 3.913 10 O -0.550 6.550 11 N -0.524 5.524 12 C 0.020 3.980 13 C 0.052 3.948 14 C -0.095 4.095 15 C -0.013 4.013 16 C -0.516 4.516 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.020 4.020 25 C -0.215 4.215 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.370 0.630 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.014 0.986 42 H 0.008 0.992 43 H 0.262 0.738 44 H 0.140 0.860 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -8.531 -21.815 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.078 3.922 4 C -0.179 4.179 5 C -0.100 4.100 6 C -0.112 4.112 7 C 0.019 3.981 8 H 0.073 0.927 9 C 0.009 3.991 10 O -0.353 6.353 11 N -0.248 5.248 12 C -0.128 4.128 13 C -0.075 4.075 14 C -0.133 4.133 15 C -0.051 4.051 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.039 4.039 25 C -0.233 4.233 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.215 0.785 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.157 0.843 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.774 -8.937 -21.178 23.701 hybrid contribution 1.237 -0.397 0.316 1.337 sum 7.011 -9.334 -20.862 23.906 Atomic orbital electron populations 1.23031 0.78498 1.03625 1.01586 1.86023 1.21343 1.27315 1.88919 1.19053 0.92354 0.84070 0.96710 1.20229 0.91323 0.98220 1.08172 1.20779 0.99323 0.91260 0.98669 1.19446 0.94128 0.93197 1.04386 1.20571 0.95142 0.90394 0.92021 0.92724 1.22196 0.84082 0.98730 0.94089 1.86649 1.25470 1.86938 1.36255 1.62021 1.54223 1.01597 1.06979 1.22480 0.96680 0.90950 1.02670 1.22359 0.98603 0.99997 0.86589 1.21461 0.98525 0.98127 0.95174 1.19547 0.96499 0.96687 0.92361 1.21149 1.25203 1.15603 0.93416 0.91044 1.25026 0.95067 0.96277 0.97148 1.69922 1.38087 1.40267 1.06230 0.86799 0.80160 0.83599 0.78876 1.20384 1.21424 1.18994 1.20892 0.94032 0.97041 0.91902 1.21318 1.00027 0.92462 1.09536 0.88516 0.92400 0.92748 0.85692 0.85992 0.93777 0.93340 0.78501 0.91705 0.90274 0.96232 0.90963 0.95638 0.92902 0.92048 0.96722 0.97411 0.92839 0.84265 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.14 10.50 -19.42 -0.20 -4.34 16 3 C 0.12 1.68 6.69 -39.22 -0.26 1.42 16 4 C -0.16 -2.07 9.99 -39.43 -0.39 -2.46 16 5 C -0.08 -1.01 9.66 -39.60 -0.38 -1.39 16 6 C -0.11 -1.49 3.49 -104.60 -0.37 -1.85 16 7 C 0.13 1.59 2.10 -68.86 -0.14 1.44 16 8 H 0.06 0.64 7.97 -51.93 -0.41 0.23 16 9 C 0.09 0.87 6.28 37.16 0.23 1.10 16 10 O -0.55 -5.86 11.89 -35.23 -0.42 -6.28 16 11 N -0.52 -7.68 3.92 -236.28 -0.93 -8.60 16 12 C 0.02 0.26 8.80 60.06 0.53 0.79 16 13 C 0.05 0.89 4.69 -3.82 -0.02 0.87 16 14 C -0.09 -1.96 5.10 -26.73 -0.14 -2.10 16 15 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 16 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 17 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 20 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 24 C -0.02 -0.29 7.68 -39.60 -0.30 -0.60 16 25 C -0.21 -2.93 9.04 -39.43 -0.36 -3.29 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.12 1.22 8.02 -52.49 -0.42 0.80 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.43 6.25 -51.93 -0.32 0.11 16 33 H 0.37 2.28 9.12 45.56 0.42 2.70 16 34 H 0.06 0.74 6.51 -51.92 -0.34 0.40 16 35 H 0.08 1.14 6.08 -51.93 -0.32 0.82 16 36 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 37 H 0.07 1.31 6.43 -51.93 -0.33 0.98 16 38 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 39 H 0.05 1.08 6.36 -51.93 -0.33 0.75 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.01 0.37 7.20 -51.93 -0.37 -0.01 16 42 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.14 2.18 7.38 -52.49 -0.39 1.79 16 45 H 0.13 1.50 6.30 -52.49 -0.33 1.17 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -33.83 356.52 -7.69 -41.52 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.46 Total: 1.24 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -1.15 Total: -18.85 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.15 Total: -36.37 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.62 Total: -10.63 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.83 -7.69 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304064359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.602 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds