Wall clock time and date at job start Tue Mar 31 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00116 * 2 1 4 4 C 1.38730 * 120.06006 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94990 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05250 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94241 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47547 * 342.27615 * 7 6 5 9 9 C 1.53007 * 109.46999 * 102.27853 * 7 6 5 10 10 O 1.42904 * 109.47152 * 56.13576 * 9 7 6 11 11 N 1.46900 * 109.47157 * 222.27217 * 7 6 5 12 12 C 1.46891 * 111.00392 * 184.72097 * 11 7 6 13 13 C 1.46904 * 110.99452 * 60.77116 * 11 7 6 14 14 C 1.53005 * 109.46977 * 189.99786 * 13 11 7 15 15 C 1.53001 * 109.47093 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47134 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00227 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00202 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00153 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47052 * 89.99883 * 20 18 16 22 22 H 1.48502 * 109.47278 * 210.00396 * 20 18 16 23 23 H 1.48502 * 109.46846 * 330.00302 * 20 18 16 24 24 C 1.38271 * 120.11109 * 0.27251 * 6 5 4 25 25 C 1.38143 * 120.05397 * 359.45904 * 24 6 5 26 26 H 1.09001 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47176 * 299.99805 * 1 2 3 28 28 H 1.08998 * 109.47298 * 60.00175 * 1 2 3 29 29 H 1.08003 * 120.02622 * 359.95280 * 4 3 2 30 30 H 1.07997 * 119.97382 * 180.02562 * 5 4 3 31 31 H 1.08992 * 109.47002 * 296.13349 * 9 7 6 32 32 H 1.09001 * 109.46726 * 176.13384 * 9 7 6 33 33 H 0.96693 * 113.99457 * 180.02562 * 10 9 7 34 34 H 1.09010 * 109.47140 * 66.02745 * 12 11 7 35 35 H 1.08998 * 109.47412 * 186.02620 * 12 11 7 36 36 H 1.09004 * 109.47662 * 306.03215 * 12 11 7 37 37 H 1.09003 * 109.47342 * 309.99663 * 13 11 7 38 38 H 1.08997 * 109.47063 * 70.00006 * 13 11 7 39 39 H 1.08990 * 109.47227 * 300.00289 * 14 13 11 40 40 H 1.09007 * 109.47156 * 60.00303 * 14 13 11 41 41 H 1.09000 * 109.47632 * 300.00563 * 15 14 13 42 42 H 1.08997 * 109.46771 * 60.00328 * 15 14 13 43 43 H 0.97002 * 119.99588 * 180.02562 * 19 18 16 44 44 H 1.07992 * 119.96981 * 179.70839 * 24 6 5 45 45 H 1.07997 * 120.03031 * 180.27751 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0185 -0.0028 8 1 5.0232 4.8981 0.3098 9 6 3.9437 5.6112 -1.4127 10 8 2.5878 5.6856 -1.8578 11 7 3.2956 5.9207 0.9285 12 6 3.8657 7.2733 0.8713 13 6 3.3320 5.3916 2.2984 14 6 2.4010 6.2171 3.1889 15 6 2.4385 5.6656 4.6156 16 6 1.5211 6.4782 5.4925 17 1 0.9663 7.3050 5.0740 18 6 1.3898 6.1662 6.8290 19 7 0.5887 6.8750 7.5942 20 14 2.3486 4.7356 7.5527 21 1 3.6611 5.2206 8.0502 22 1 1.5808 4.1437 8.6776 23 1 2.5661 3.7054 6.5056 24 6 1.9210 3.6048 0.0041 25 6 1.2915 2.3751 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 4.0208 0.3800 -0.0002 30 1 5.1345 2.5750 -0.0019 31 1 4.5144 4.9768 -2.0908 32 1 4.3772 6.6113 -1.3996 33 1 2.4852 6.0523 -2.7465 34 1 3.6679 7.7099 -0.1078 35 1 3.4101 7.8926 1.6439 36 1 4.9421 7.2213 1.0351 37 1 3.0044 4.3520 2.2953 38 1 4.3499 5.4506 2.6837 39 1 2.7286 7.2566 3.1920 40 1 1.3830 6.1581 2.8036 41 1 2.1107 4.6261 4.6121 42 1 3.4563 5.7242 5.0011 43 1 0.4967 6.6557 8.5346 44 1 1.3342 4.5114 0.0084 45 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304064359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:39 Heat of formation + Delta-G solvation = -81.198539 kcal Electronic energy + Delta-G solvation = -23985.227593 eV Core-core repulsion = 20581.239121 eV Total energy + Delta-G solvation = -3403.988472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.21244 -39.85714 -37.79756 -37.14793 -35.55658 -33.72063 -32.01380 -31.92227 -29.69992 -28.66989 -27.61300 -26.77791 -24.03901 -23.71172 -22.84233 -21.61280 -20.86683 -19.04870 -18.89331 -18.30622 -17.37155 -17.03766 -16.63464 -16.44693 -16.29225 -15.76884 -15.55846 -15.11743 -14.90389 -14.80840 -14.51574 -14.39255 -14.02026 -13.80032 -13.61121 -13.50273 -13.22630 -12.95046 -12.74726 -12.71894 -12.50281 -12.31540 -11.98939 -11.81977 -11.78892 -11.61689 -11.44080 -11.31476 -11.15993 -10.76669 -10.71521 -9.84857 -9.15905 -8.97447 -8.30121 -6.33862 0.45696 0.55582 1.33399 1.35989 1.48340 2.35226 2.41318 2.79191 3.03002 3.05028 3.48585 3.86676 3.96810 4.02598 4.12965 4.21782 4.31587 4.35629 4.37428 4.50369 4.52934 4.56072 4.60983 4.64088 4.65712 4.70126 4.72837 4.78776 4.85272 4.92239 4.99744 5.05762 5.18525 5.21865 5.36022 5.51645 5.52576 5.60613 5.66172 5.77203 5.89020 6.15488 6.28984 6.30529 6.48536 6.73883 7.09038 7.30611 8.86949 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.004665 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.274514 B = 6001.237946 C = 7601.449308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.110 3.890 4 C -0.168 4.168 5 C -0.080 4.080 6 C -0.117 4.117 7 C 0.123 3.877 8 H 0.069 0.931 9 C 0.090 3.910 10 O -0.573 6.573 11 N -0.535 5.535 12 C 0.021 3.979 13 C 0.068 3.932 14 C -0.085 4.085 15 C -0.008 4.008 16 C -0.530 4.530 17 H 0.030 0.970 18 C 0.005 3.995 19 N -0.952 5.952 20 Si 0.950 3.050 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.251 1.251 24 C -0.035 4.035 25 C -0.226 4.226 26 H 0.121 0.879 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.388 0.612 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.013 0.987 42 H 0.017 0.983 43 H 0.266 0.734 44 H 0.120 0.880 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.638 -10.134 -22.970 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.065 3.935 4 C -0.186 4.186 5 C -0.099 4.099 6 C -0.118 4.118 7 C 0.016 3.984 8 H 0.087 0.913 9 C 0.012 3.988 10 O -0.379 6.379 11 N -0.259 5.259 12 C -0.126 4.126 13 C -0.060 4.060 14 C -0.123 4.123 15 C -0.046 4.046 16 C -0.568 4.568 17 H 0.048 0.952 18 C -0.192 4.192 19 N -0.593 5.593 20 Si 0.773 3.227 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.174 1.174 24 C -0.054 4.054 25 C -0.244 4.244 26 H 0.139 0.861 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.053 -10.527 -22.374 26.005 hybrid contribution 0.422 0.169 0.613 0.763 sum 8.475 -10.359 -21.760 25.547 Atomic orbital electron populations 1.23271 0.76912 1.05375 1.01830 1.86003 1.23069 1.27009 1.88875 1.19258 0.92974 0.84268 0.96976 1.20550 0.91270 0.99191 1.07639 1.21071 1.00647 0.90551 0.97596 1.19621 0.93773 0.94217 1.04202 1.20735 0.95286 0.89564 0.92863 0.91308 1.22201 0.84069 0.99698 0.92793 1.86610 1.26090 1.87338 1.37903 1.61923 1.55687 1.02630 1.05663 1.22486 0.97275 0.89814 1.03047 1.22014 0.97621 0.98620 0.87760 1.21267 0.98645 0.98586 0.93768 1.19472 0.95555 0.95768 0.93828 1.21477 1.25705 1.15169 0.94484 0.95167 1.26009 0.96158 0.99454 0.97566 1.70073 1.39930 1.42420 1.06836 0.85665 0.78918 0.79837 0.78288 1.18822 1.20782 1.17442 1.20808 0.94722 0.96516 0.93329 1.21438 1.00616 0.92521 1.09855 0.86064 0.92814 0.91852 0.84168 0.83296 0.91893 0.91946 0.76386 0.89874 0.92266 0.94732 0.91835 0.94937 0.93085 0.93851 0.96840 0.96419 0.92482 0.86179 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -8.27 10.50 -92.40 -0.97 -9.24 16 3 C 0.11 2.92 6.69 22.51 0.15 3.07 16 4 C -0.17 -4.02 9.99 22.37 0.22 -3.79 16 5 C -0.08 -1.79 9.66 22.26 0.22 -1.58 16 6 C -0.12 -2.96 3.49 -19.85 -0.07 -3.03 16 7 C 0.12 2.78 2.10 44.17 0.09 2.87 16 8 H 0.07 1.37 7.97 -2.39 -0.02 1.35 16 9 C 0.09 1.55 6.28 71.98 0.45 2.00 16 10 O -0.57 -11.26 11.89 -148.98 -1.77 -13.03 16 11 N -0.53 -14.91 3.92 -901.46 -3.53 -18.45 16 12 C 0.02 0.52 8.80 127.69 1.12 1.64 16 13 C 0.07 2.26 4.69 86.30 0.40 2.67 16 14 C -0.08 -3.53 5.10 30.60 0.16 -3.38 16 15 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 16 C -0.53 -31.93 9.66 25.60 0.25 -31.68 16 17 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 18 C 0.00 0.28 5.47 84.65 0.46 0.75 16 19 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 20 Si 0.95 45.77 27.47 68.60 1.88 47.65 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 24 C -0.04 -1.01 7.68 22.25 0.17 -0.84 16 25 C -0.23 -6.13 9.04 22.37 0.20 -5.93 16 26 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 0.97 7.66 -2.39 -0.02 0.95 16 28 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 29 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.15 2.43 8.02 -2.91 -0.02 2.40 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.89 6.25 -2.39 -0.01 0.88 16 33 H 0.39 4.07 9.12 -74.06 -0.68 3.40 16 34 H 0.08 1.71 6.51 -2.38 -0.02 1.69 16 35 H 0.06 1.67 6.08 -2.39 -0.01 1.65 16 36 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 37 H 0.06 2.24 6.43 -2.39 -0.02 2.23 16 38 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 39 H 0.05 2.12 6.36 -2.39 -0.02 2.10 16 40 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 42 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 43 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 44 H 0.12 3.85 7.38 -2.91 -0.02 3.83 16 45 H 0.13 3.20 6.30 -2.91 -0.02 3.18 16 Total: -1.00 -74.06 356.52 1.22 -72.84 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.25 Total: 17.30 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 5.06 Total: -36.05 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -3.23 Total: -79.46 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -2.74 Total: -22.27 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Total: -74.06 1.22 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304064359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.362 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds