Wall clock time and date at job start Tue Mar 31 2020 07:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 N 1.46896 * 109.47255 * 179.97438 * 15 14 12 17 17 C 1.46849 * 110.99677 * 45.79025 * 16 15 14 18 18 C 1.53040 * 109.52187 * 185.83959 * 17 16 15 19 19 C 1.53126 * 109.27755 * 300.81954 * 18 17 16 20 20 C 1.52998 * 109.57455 * 177.58989 * 19 18 17 21 21 C 1.47194 * 109.52209 * 297.75045 * 19 18 17 22 22 N 8.09586 * 90.81214 * 205.98725 * 2 1 3 23 23 C 1.53120 * 109.15814 * 57.65546 * 19 18 17 24 24 C 1.46847 * 110.99913 * 169.99675 * 16 15 14 25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 30 30 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 32 32 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 34 34 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 35 35 H 1.08995 * 109.46512 * 305.85033 * 17 16 15 36 36 H 1.09002 * 109.46603 * 65.82643 * 17 16 15 37 37 H 1.08997 * 109.50368 * 180.88052 * 18 17 16 38 38 H 1.08999 * 109.53625 * 60.77824 * 18 17 16 39 39 H 1.08998 * 109.47319 * 300.28424 * 20 19 18 40 40 H 1.09003 * 109.47237 * 60.28588 * 20 19 18 41 41 H 1.09000 * 109.47090 * 180.28395 * 20 19 18 42 42 H 1.09008 * 109.50008 * 182.40638 * 23 19 18 43 43 H 1.08997 * 109.53698 * 62.30568 * 23 19 18 44 44 H 1.08998 * 109.46619 * 294.17949 * 24 16 15 45 45 H 1.08997 * 109.46561 * 54.14765 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 7 1.6454 -4.9073 -0.0154 17 6 0.5541 -4.8811 -0.9977 18 6 -0.2761 -6.1607 -0.8742 19 6 0.6258 -7.3740 -1.1177 20 6 -0.1842 -8.6593 -0.9366 21 6 1.1636 -7.3202 -2.4868 22 7 1.5798 -7.2766 -3.5470 23 6 1.7809 -7.3512 -0.1128 24 6 2.5515 -6.0371 -0.2585 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0317 4.4431 -0.8505 31 1 0.7588 -2.5340 0.8844 32 1 0.7590 -2.5261 -0.8955 33 1 3.0065 -3.5735 -0.9001 34 1 3.0065 -3.5813 0.8798 35 1 -0.0820 -4.0160 -0.8108 36 1 0.9714 -4.8146 -2.0025 37 1 -1.0766 -6.1480 -1.6139 38 1 -0.7056 -6.2214 0.1258 39 1 -0.5839 -8.6972 0.0767 40 1 -1.0062 -8.6746 -1.6523 41 1 0.4605 -9.5218 -1.1054 42 1 2.4501 -8.1891 -0.3086 43 1 1.3849 -7.4306 0.8996 44 1 2.9595 -5.9651 -1.2667 45 1 3.3660 -6.0116 0.4653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330783703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:48 Heat of formation + Delta-G solvation = -12.595243 kcal Electronic energy + Delta-G solvation = -23688.082867 eV Core-core repulsion = 20319.362008 eV Total energy + Delta-G solvation = -3368.720859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24353 -38.94094 -36.67628 -35.02034 -34.69663 -32.65356 -31.60115 -30.86994 -28.40480 -27.32860 -25.73223 -24.33808 -23.58623 -23.09829 -21.87222 -20.73978 -18.32107 -17.12595 -16.63152 -16.45116 -15.50874 -15.38526 -15.26657 -15.21061 -14.81176 -14.63797 -14.22494 -14.04288 -13.85232 -13.27707 -13.02552 -12.67984 -12.56557 -12.45031 -12.33728 -12.21062 -12.17027 -12.09709 -11.82578 -11.68160 -11.56164 -11.45227 -11.15512 -11.02341 -10.83783 -10.70197 -10.59639 -10.46102 -10.15936 -9.60851 -8.88736 -8.44752 -8.43893 -7.63556 -6.04641 -4.09300 2.50492 2.52117 3.29370 3.36605 3.39556 3.46064 3.47502 3.66309 4.11370 4.25887 4.32308 4.43392 4.45498 4.79455 5.00171 5.04680 5.12875 5.14900 5.21016 5.23306 5.25443 5.30836 5.32604 5.38608 5.53729 5.58020 5.63994 5.66580 5.70107 5.75418 5.80023 5.83861 5.92645 6.08302 6.15420 6.21123 6.90887 6.92194 7.06784 7.31976 7.44860 7.54695 7.92066 8.23546 8.42604 8.90414 9.10238 9.55948 11.03485 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023783 B = 0.003084 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.048535 B = 9077.793395 C = 9461.019763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.142 4.142 15 C 0.072 3.928 16 N -0.534 5.534 17 C 0.038 3.962 18 C -0.103 4.103 19 C 0.033 3.967 20 C -0.140 4.140 21 C 0.212 3.788 22 N -0.435 5.435 23 C -0.102 4.102 24 C 0.049 3.951 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.032 0.968 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -22.860 4.579 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.422 6.422 14 C -0.182 4.182 15 C -0.056 4.056 16 N -0.259 5.259 17 C -0.090 4.090 18 C -0.142 4.142 19 C 0.029 3.971 20 C -0.198 4.198 21 C -0.106 4.106 22 N -0.110 5.110 23 C -0.141 4.141 24 C -0.079 4.079 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.050 0.950 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.306 -22.657 3.460 25.130 hybrid contribution 0.351 0.631 -1.531 1.693 sum -9.955 -22.025 1.929 24.248 Atomic orbital electron populations 1.21629 0.81465 1.02472 1.00420 1.48159 1.06173 1.07885 1.71332 1.19288 0.92590 0.78159 0.97460 1.21473 1.36383 1.06236 0.92344 0.92510 1.24942 0.95368 0.96415 0.97425 1.69941 1.38442 1.14358 1.30648 0.86451 0.78112 0.78303 0.84607 1.19853 1.20918 1.20852 1.20277 0.88081 0.85142 0.77499 1.90670 1.13989 1.87332 1.50250 1.21816 0.99428 0.93095 1.03908 1.21837 0.94925 0.86161 1.02635 1.62094 1.11671 1.03138 1.48984 1.22320 0.94180 0.98588 0.93895 1.21741 0.96843 0.91601 1.03974 1.18486 0.96560 0.98487 0.83531 1.21861 0.99740 0.94674 1.03504 1.29339 0.93476 0.93014 0.94759 1.81407 1.08795 1.08539 1.12224 1.21728 0.95656 0.97480 0.99239 1.22133 0.95250 0.90230 1.00294 0.93663 0.90855 0.92553 0.95006 0.93831 0.92762 0.88650 0.89467 0.93896 0.89490 0.89088 0.94964 0.90608 0.88607 0.90146 0.91688 0.91724 0.90630 0.88612 0.94970 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.25 59.85 0.61 1.92 16 2 N -0.60 -12.78 2.86 -182.95 -0.52 -13.30 16 3 C 0.24 6.46 5.16 -5.20 -0.03 6.43 16 4 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 C 0.50 10.37 7.67 -10.98 -0.08 10.28 16 13 O -0.54 -13.70 15.56 5.55 0.09 -13.61 16 14 C -0.14 -2.01 3.50 -27.88 -0.10 -2.11 16 15 C 0.07 0.99 4.56 -3.83 -0.02 0.98 16 16 N -0.53 -5.63 4.81 -234.67 -1.13 -6.76 16 17 C 0.04 0.36 4.64 -3.83 -0.02 0.34 16 18 C -0.10 -0.67 4.86 -26.65 -0.13 -0.79 16 19 C 0.03 0.22 0.72 -157.17 -0.11 0.10 16 20 C -0.14 -0.58 8.44 37.16 0.31 -0.26 16 21 C 0.21 2.20 11.61 -20.64 -0.24 1.96 16 22 N -0.44 -5.93 18.56 42.31 0.79 -5.14 16 23 C -0.10 -0.65 4.86 -26.65 -0.13 -0.78 16 24 C 0.05 0.47 5.22 -3.83 -0.02 0.45 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 27 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.10 1.14 8.11 -51.93 -0.42 0.72 16 32 H 0.09 1.12 5.46 -51.93 -0.28 0.83 16 33 H 0.04 0.69 8.04 -51.93 -0.42 0.28 16 34 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.09 0.81 5.81 -51.93 -0.30 0.51 16 36 H 0.03 0.38 7.31 -51.93 -0.38 0.00 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.03 0.37 7.31 -51.93 -0.38 -0.01 16 45 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -35.36 361.80 -7.49 -42.85 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -7.51 Total: -5.24 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.37 Total: 4.72 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.13 Total: -51.34 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.36 -7.49 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330783703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.256 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds