Wall clock time and date at job start Tue Mar 31 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 N 1.46896 * 109.47255 * 179.97438 * 15 14 12 17 17 C 1.46849 * 110.99677 * 45.79025 * 16 15 14 18 18 C 1.53040 * 109.52187 * 185.83959 * 17 16 15 19 19 C 1.53126 * 109.27755 * 300.81954 * 18 17 16 20 20 C 1.52998 * 109.57455 * 177.58989 * 19 18 17 21 21 C 1.47194 * 109.52209 * 297.75045 * 19 18 17 22 22 N 8.09586 * 90.81214 * 205.98725 * 2 1 3 23 23 C 1.53120 * 109.15814 * 57.65546 * 19 18 17 24 24 C 1.46847 * 110.99913 * 169.99675 * 16 15 14 25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 30 30 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 32 32 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 34 34 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 35 35 H 1.08995 * 109.46512 * 305.85033 * 17 16 15 36 36 H 1.09002 * 109.46603 * 65.82643 * 17 16 15 37 37 H 1.08997 * 109.50368 * 180.88052 * 18 17 16 38 38 H 1.08999 * 109.53625 * 60.77824 * 18 17 16 39 39 H 1.08998 * 109.47319 * 300.28424 * 20 19 18 40 40 H 1.09003 * 109.47237 * 60.28588 * 20 19 18 41 41 H 1.09000 * 109.47090 * 180.28395 * 20 19 18 42 42 H 1.09008 * 109.50008 * 182.40638 * 23 19 18 43 43 H 1.08997 * 109.53698 * 62.30568 * 23 19 18 44 44 H 1.08998 * 109.46619 * 294.17949 * 24 16 15 45 45 H 1.08997 * 109.46561 * 54.14765 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 7 1.6454 -4.9073 -0.0154 17 6 0.5541 -4.8811 -0.9977 18 6 -0.2761 -6.1607 -0.8742 19 6 0.6258 -7.3740 -1.1177 20 6 -0.1842 -8.6593 -0.9366 21 6 1.1636 -7.3202 -2.4868 22 7 1.5798 -7.2766 -3.5470 23 6 1.7809 -7.3512 -0.1128 24 6 2.5515 -6.0371 -0.2585 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0317 4.4431 -0.8505 31 1 0.7588 -2.5340 0.8844 32 1 0.7590 -2.5261 -0.8955 33 1 3.0065 -3.5735 -0.9001 34 1 3.0065 -3.5813 0.8798 35 1 -0.0820 -4.0160 -0.8108 36 1 0.9714 -4.8146 -2.0025 37 1 -1.0766 -6.1480 -1.6139 38 1 -0.7056 -6.2214 0.1258 39 1 -0.5839 -8.6972 0.0767 40 1 -1.0062 -8.6746 -1.6523 41 1 0.4605 -9.5218 -1.1054 42 1 2.4501 -8.1891 -0.3086 43 1 1.3849 -7.4306 0.8996 44 1 2.9595 -5.9651 -1.2667 45 1 3.3660 -6.0116 0.4653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330783703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:47 Heat of formation + Delta-G solvation = -37.671766 kcal Electronic energy + Delta-G solvation = -23689.170266 eV Core-core repulsion = 20319.362008 eV Total energy + Delta-G solvation = -3369.808258 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11026 -40.40256 -37.61676 -36.60898 -35.71607 -34.75490 -32.52805 -31.71303 -29.91454 -28.44602 -27.24713 -25.48657 -24.61650 -24.06306 -22.99336 -21.67649 -19.86690 -18.73522 -18.19285 -17.55771 -17.13092 -16.71152 -16.25012 -16.22502 -15.93744 -15.68917 -15.36429 -15.11120 -14.75491 -14.45348 -14.24362 -13.87342 -13.68991 -13.65440 -13.46830 -13.35558 -13.18230 -13.09031 -12.97069 -12.84311 -12.69088 -12.58071 -12.42241 -12.25343 -12.23589 -12.12129 -11.97993 -11.70377 -11.30994 -11.17497 -10.68069 -10.59823 -9.43253 -9.37968 -8.25839 -6.40719 1.32319 1.34998 1.46432 1.71557 1.74669 1.83422 2.27134 2.39779 2.83685 2.99712 3.03497 3.68376 3.74009 3.82434 3.91074 3.94205 4.10753 4.26886 4.36976 4.38351 4.48730 4.55549 4.62259 4.75086 4.75982 4.80774 4.91363 4.92603 4.96959 4.99101 5.00378 5.04025 5.10952 5.15145 5.22232 5.26284 5.31295 5.42347 5.53959 5.83021 5.95876 6.03628 6.08570 6.55699 6.67146 6.79059 7.25407 7.48026 8.81320 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023783 B = 0.003084 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.048535 B = 9077.793395 C = 9461.019763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.927 5.927 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.492 3.508 13 O -0.604 6.604 14 C -0.121 4.121 15 C 0.078 3.922 16 N -0.517 5.517 17 C 0.030 3.970 18 C -0.096 4.096 19 C 0.032 3.968 20 C -0.135 4.135 21 C 0.235 3.765 22 N -0.505 5.505 23 C -0.095 4.095 24 C 0.043 3.957 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.026 0.974 29 H -0.003 1.003 30 H 0.268 0.732 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.006 0.994 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.002 0.998 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.002 0.998 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 -24.745 5.220 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.068 0.932 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.190 1.190 11 H -0.208 1.208 12 C 0.281 3.719 13 O -0.486 6.486 14 C -0.160 4.160 15 C -0.050 4.050 16 N -0.242 5.242 17 C -0.097 4.097 18 C -0.135 4.135 19 C 0.029 3.971 20 C -0.193 4.193 21 C -0.082 4.082 22 N -0.180 5.180 23 C -0.133 4.133 24 C -0.085 4.085 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.024 0.976 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.020 0.980 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.143 0.857 44 H 0.020 0.980 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.407 -24.564 4.107 28.284 hybrid contribution 1.312 1.216 -1.672 2.449 sum -12.094 -23.348 2.436 26.407 Atomic orbital electron populations 1.21963 0.77605 1.03974 1.02873 1.48206 1.08591 1.06320 1.71125 1.18750 0.91177 0.80630 0.95845 1.21737 1.36801 1.06520 0.93125 0.93156 1.25854 0.94915 0.96464 1.01927 1.70049 1.38918 1.14849 1.32908 0.85387 0.77890 0.78486 0.79148 1.19431 1.19047 1.20790 1.21437 0.87813 0.86847 0.75829 1.90638 1.16925 1.88301 1.52713 1.21752 0.98939 0.88835 1.06519 1.21662 0.94806 0.88152 1.00423 1.62187 1.11383 1.01573 1.49016 1.22502 0.94046 1.01271 0.91926 1.21796 0.96294 0.89247 1.06150 1.18852 0.96936 1.00333 0.81007 1.21886 0.99317 0.92767 1.05313 1.30245 0.91810 0.90910 0.95223 1.81416 1.11029 1.10953 1.14646 1.21761 0.95465 0.95455 1.00617 1.22263 0.95936 0.91709 0.98597 0.90636 0.91815 0.88638 0.95641 0.98524 0.92330 0.84909 0.87307 0.97569 0.90646 0.87811 0.98008 0.89378 0.85576 0.87312 0.91457 0.91613 0.89624 0.85744 0.97993 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 10.25 127.77 1.31 3.52 16 2 N -0.61 -25.97 2.86 -851.12 -2.43 -28.41 16 3 C 0.26 14.17 5.16 85.63 0.44 14.61 16 4 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.44 5.46 84.66 0.46 0.90 16 7 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 8 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.49 20.49 7.67 87.66 0.67 21.16 16 13 O -0.60 -32.04 15.56 -3.04 -0.05 -32.09 16 14 C -0.12 -3.21 3.50 29.85 0.10 -3.10 16 15 C 0.08 2.16 4.56 86.30 0.39 2.55 16 16 N -0.52 -10.00 4.81 -896.37 -4.31 -14.31 16 17 C 0.03 0.50 4.64 86.33 0.40 0.90 16 18 C -0.10 -0.86 4.86 30.65 0.15 -0.71 16 19 C 0.03 0.33 0.72 -53.91 -0.04 0.29 16 20 C -0.13 -0.55 8.44 71.98 0.61 0.06 16 21 C 0.23 4.70 11.61 89.40 1.04 5.74 16 22 N -0.50 -14.14 18.56 20.05 0.37 -13.77 16 23 C -0.09 -0.92 4.86 30.65 0.15 -0.77 16 24 C 0.04 0.78 5.22 86.33 0.45 1.23 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 27 H 0.10 1.97 6.43 -2.39 -0.02 1.95 16 28 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 29 H 0.00 -0.21 7.42 -2.38 -0.02 -0.23 16 30 H 0.27 15.34 8.31 -92.72 -0.77 14.57 16 31 H 0.13 2.62 8.11 -2.38 -0.02 2.60 16 32 H 0.11 2.47 5.46 -2.39 -0.01 2.46 16 33 H 0.01 0.21 8.04 -2.38 -0.02 0.19 16 34 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 35 H 0.10 1.44 5.81 -2.39 -0.01 1.42 16 36 H 0.00 0.04 7.31 -2.39 -0.02 0.02 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.13 0.48 8.14 -2.39 -0.02 0.47 16 39 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.09 0.71 8.14 -2.38 -0.02 0.70 16 43 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 44 H 0.00 0.04 7.31 -2.39 -0.02 0.03 16 45 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 Total: -1.00 -84.10 361.80 3.24 -80.87 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 0.96 Total: 1.88 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.38 Total: 14.52 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -6.08 Total: -113.21 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -84.10 3.24 -80.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330783703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.193 kcal (2) G-P(sol) polarization free energy of solvation -84.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds