Wall clock time and date at job start Tue Mar 31 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37815 * 126.28423 * 2 1 4 4 C 1.47755 * 126.37910 * 0.02562 * 3 2 1 5 5 O 1.35239 * 120.00114 * 179.97438 * 4 3 2 6 6 N 1.30133 * 119.99652 * 359.97023 * 4 3 2 7 7 C 1.46506 * 119.99772 * 185.35857 * 6 4 3 8 8 H 1.09001 * 109.47080 * 5.17484 * 7 6 4 9 9 C 1.53001 * 109.47035 * 125.17554 * 7 6 4 10 10 C 1.50697 * 109.47049 * 245.17137 * 7 6 4 11 11 H 1.07994 * 120.00103 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99982 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00081 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00004 * 0.02562 * 12 10 7 15 15 H 1.48509 * 109.47034 * 89.99830 * 14 12 10 16 16 H 1.48502 * 109.47281 * 209.99674 * 14 12 10 17 17 H 1.48500 * 109.47286 * 330.00026 * 14 12 10 18 18 C 1.41150 * 107.24504 * 179.97438 * 3 2 1 19 19 N 1.30512 * 108.06641 * 0.02562 * 18 3 2 20 20 N 1.34453 * 126.28652 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.79065 * 0.02562 * 20 2 1 22 22 C 1.53000 * 109.47004 * 270.00302 * 21 20 2 23 23 C 1.53004 * 109.47166 * 180.02562 * 22 21 20 24 24 C 1.52996 * 109.47389 * 174.99924 * 23 22 21 25 25 C 1.53007 * 109.46801 * 294.99515 * 23 22 21 26 26 H 1.09003 * 109.47254 * 89.97813 * 1 2 3 27 27 H 1.09002 * 109.47171 * 209.97186 * 1 2 3 28 28 H 1.08996 * 109.47749 * 329.97407 * 1 2 3 29 29 H 0.96700 * 113.99735 * 294.89102 * 5 4 3 30 30 H 1.09001 * 109.47670 * 299.99737 * 9 7 6 31 31 H 1.09001 * 109.47244 * 60.00031 * 9 7 6 32 32 H 1.09002 * 109.47292 * 180.02562 * 9 7 6 33 33 H 0.97001 * 120.00291 * 179.97438 * 13 12 10 34 34 H 1.08004 * 125.96693 * 179.97438 * 18 3 2 35 35 H 1.08998 * 109.47187 * 29.99806 * 21 20 2 36 36 H 1.09003 * 109.47257 * 150.00023 * 21 20 2 37 37 H 1.09003 * 109.47374 * 299.99421 * 22 21 20 38 38 H 1.08998 * 109.47623 * 60.00129 * 22 21 20 39 39 H 1.09002 * 109.47258 * 54.99230 * 23 22 21 40 40 H 1.08996 * 109.47063 * 59.99588 * 24 23 22 41 41 H 1.08994 * 109.47416 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.46803 * 299.99810 * 24 23 22 43 43 H 1.08995 * 109.47222 * 179.97438 * 25 23 22 44 44 H 1.08996 * 109.47310 * 300.00202 * 25 23 22 45 45 H 1.09000 * 109.46823 * 60.00009 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3226 1.1109 0.0000 4 6 1.8823 2.5213 0.0005 5 8 2.7987 3.5158 0.0010 6 7 0.6126 2.8065 0.0005 7 6 0.1748 4.1997 -0.1175 8 1 1.0408 4.8396 -0.2866 9 6 -0.7944 4.3318 -1.2940 10 6 -0.5183 4.6177 1.1537 11 1 -0.6219 3.9161 1.9681 12 6 -1.0192 5.8964 1.2773 13 7 -1.6236 6.2614 2.3868 14 14 -0.8393 7.1102 -0.1311 15 1 -2.0163 7.0029 -1.0304 16 1 -0.7555 8.4898 0.4120 17 1 0.3967 6.8028 -0.8947 18 6 3.6568 0.6505 0.0006 19 7 3.6347 -0.6545 0.0004 20 7 2.3027 -1.0838 0.0005 21 6 1.8519 -2.4777 0.0006 22 6 1.6943 -2.9626 1.4431 23 6 1.2241 -4.4186 1.4433 24 6 1.1862 -4.9423 2.8803 25 6 -0.1765 -4.5022 0.8330 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8897 0.5142 29 1 3.3386 3.5527 0.8024 30 1 -0.2932 4.0294 -2.2135 31 1 -1.6605 3.6919 -1.1249 32 1 -1.1198 5.3684 -1.3820 33 1 -1.9757 7.1610 2.4739 34 1 4.5416 1.2699 0.0004 35 1 0.8934 -2.5496 -0.5135 36 1 2.5870 -3.0974 -0.5129 37 1 2.6528 -2.8908 1.9573 38 1 0.9592 -2.3430 1.9566 39 1 1.9137 -5.0233 0.8542 40 1 0.4966 -4.3376 3.4692 41 1 0.8508 -5.9793 2.8805 42 1 2.1840 -4.8827 3.3151 43 1 -0.5114 -5.5395 0.8326 44 1 -0.8661 -3.8976 1.4219 45 1 -0.1495 -4.1292 -0.1909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331266687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:18 Heat of formation + Delta-G solvation = 36.640069 kcal Electronic energy + Delta-G solvation = -23681.129191 eV Core-core repulsion = 20314.543336 eV Total energy + Delta-G solvation = -3366.585855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18629 -37.98492 -37.22824 -34.66562 -33.36794 -32.60921 -31.60400 -29.78809 -28.53907 -27.51491 -26.92812 -24.99633 -24.19622 -22.61667 -20.46178 -20.38290 -19.95241 -19.07244 -17.20120 -16.56307 -16.04336 -15.71679 -15.29974 -15.12154 -14.52489 -14.32451 -14.30161 -13.97162 -13.71676 -13.18940 -12.86898 -12.65930 -12.60601 -12.49288 -12.21528 -12.15251 -12.00629 -11.74190 -11.72683 -11.46307 -11.25135 -11.05590 -10.98753 -10.81177 -10.73541 -10.46073 -10.25031 -9.77323 -9.48681 -9.19490 -8.98907 -8.62847 -8.37997 -7.62324 -6.07022 -4.05914 1.81191 2.36298 2.46012 3.28890 3.39760 3.43270 3.58493 4.31055 4.40801 4.41630 4.52050 4.55606 4.72981 4.85164 4.98520 5.07859 5.10902 5.19152 5.24956 5.27439 5.30694 5.35448 5.49609 5.53593 5.64153 5.65290 5.82075 5.84050 5.88198 5.96872 6.02299 6.21352 6.25141 6.42950 6.51312 6.62748 6.66648 6.84987 7.00992 7.15750 7.40173 7.71719 7.78350 8.15745 8.45027 8.91739 9.02157 9.55224 11.05891 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.003498 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.451539 B = 8001.997074 C = 8640.062443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.142 3.858 3 C -0.221 4.221 4 C 0.367 3.633 5 O -0.525 6.525 6 N -0.485 5.485 7 C 0.164 3.836 8 H 0.027 0.973 9 C -0.134 4.134 10 C -0.504 4.504 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.900 5.900 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.297 1.297 17 H -0.265 1.265 18 C 0.075 3.925 19 N -0.307 5.307 20 N -0.368 5.368 21 C 0.132 3.868 22 C -0.133 4.133 23 C -0.093 4.093 24 C -0.148 4.148 25 C -0.154 4.154 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.389 0.611 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.186 0.814 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 -20.620 -3.737 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.011 3.989 3 C -0.234 4.234 4 C 0.139 3.861 5 O -0.328 6.328 6 N -0.212 5.212 7 C 0.055 3.945 8 H 0.045 0.955 9 C -0.191 4.191 10 C -0.543 4.543 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.224 1.224 17 H -0.190 1.190 18 C -0.113 4.113 19 N -0.127 5.127 20 N -0.150 5.150 21 C 0.010 3.990 22 C -0.172 4.172 23 C -0.112 4.112 24 C -0.205 4.205 25 C -0.211 4.211 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.244 0.756 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.203 0.797 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.599 -21.786 -4.160 23.140 hybrid contribution 0.434 2.033 -0.149 2.084 sum 7.033 -19.753 -4.309 21.406 Atomic orbital electron populations 1.20728 0.86119 1.05006 1.03771 1.21462 0.94938 0.85980 0.96503 1.18872 0.92211 0.91380 1.20965 1.20940 0.85016 0.84475 0.95716 1.84745 1.51994 1.51855 1.44231 1.72390 1.11285 1.25160 1.12344 1.19665 0.94692 0.84638 0.95514 0.95507 1.22018 1.00316 0.99922 0.96876 1.20865 1.36466 0.98024 0.98928 0.90616 1.24902 0.94582 0.97841 0.95717 1.69879 1.38447 1.19432 1.26063 0.86857 0.79150 0.79877 0.82397 1.20483 1.22431 1.19031 1.23873 0.97243 0.91779 0.98448 1.77085 0.96679 1.13025 1.25862 1.48366 1.03863 1.05730 1.57014 1.21797 1.00942 0.77699 0.98520 1.22091 1.02889 0.96357 0.95852 1.21056 0.97496 0.95199 0.97420 1.21826 1.02010 1.00911 0.95742 1.21957 0.96313 1.02027 1.00850 0.90156 0.92178 0.86139 0.75562 0.95359 0.92292 0.93865 0.92580 0.79712 0.88737 0.88878 0.90855 0.90906 0.90925 0.92427 0.92522 0.92616 0.92484 0.92196 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.29 36.00 0.33 -1.02 16 2 C 0.14 2.14 7.00 -81.60 -0.57 1.57 16 3 C -0.22 -3.65 6.13 -105.06 -0.64 -4.30 16 4 C 0.37 7.13 7.80 -14.38 -0.11 7.01 16 5 O -0.53 -9.56 11.83 -17.41 -0.21 -9.77 16 6 N -0.48 -10.80 7.58 -53.92 -0.41 -11.21 16 7 C 0.16 4.14 2.47 -69.08 -0.17 3.96 16 8 H 0.03 0.72 5.83 -51.93 -0.30 0.41 16 9 C -0.13 -3.12 9.00 37.16 0.33 -2.79 16 10 C -0.50 -14.64 9.42 -34.44 -0.32 -14.96 16 11 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 12 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 13 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 14 Si 0.89 22.47 24.37 -169.99 -4.14 18.33 16 15 H -0.28 -6.81 6.87 56.52 0.39 -6.43 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 18 C 0.07 1.07 11.87 -17.01 -0.20 0.86 16 19 N -0.31 -4.48 12.51 30.84 0.39 -4.10 16 20 N -0.37 -4.90 3.59 -56.62 -0.20 -5.10 16 21 C 0.13 1.23 5.79 -4.04 -0.02 1.20 16 22 C -0.13 -1.14 5.01 -26.73 -0.13 -1.28 16 23 C -0.09 -0.61 2.92 -90.62 -0.26 -0.88 16 24 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 25 C -0.15 -0.95 8.95 37.16 0.33 -0.62 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 28 H 0.12 2.06 6.29 -51.93 -0.33 1.73 16 29 H 0.39 5.20 9.06 45.56 0.41 5.62 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 35 H 0.09 0.74 6.05 -51.93 -0.31 0.42 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.33 6.57 -51.93 -0.34 -0.02 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -34.34 361.53 -6.10 -40.44 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.54 Total: 2.83 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.20 Total: -9.85 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.55 Total: -47.42 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.21 Total: -9.77 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.34 -6.10 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331266687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.078 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds