Wall clock time and date at job start Tue Mar 31 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37815 * 126.28423 * 2 1 4 4 C 1.47755 * 126.37910 * 0.02562 * 3 2 1 5 5 O 1.35239 * 120.00114 * 179.97438 * 4 3 2 6 6 N 1.30133 * 119.99652 * 359.97023 * 4 3 2 7 7 C 1.46506 * 119.99772 * 185.35857 * 6 4 3 8 8 H 1.09001 * 109.47080 * 5.17484 * 7 6 4 9 9 C 1.53001 * 109.47035 * 125.17554 * 7 6 4 10 10 C 1.50697 * 109.47049 * 245.17137 * 7 6 4 11 11 H 1.07994 * 120.00103 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99982 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00081 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00004 * 0.02562 * 12 10 7 15 15 H 1.48509 * 109.47034 * 89.99830 * 14 12 10 16 16 H 1.48502 * 109.47281 * 209.99674 * 14 12 10 17 17 H 1.48500 * 109.47286 * 330.00026 * 14 12 10 18 18 C 1.41150 * 107.24504 * 179.97438 * 3 2 1 19 19 N 1.30512 * 108.06641 * 0.02562 * 18 3 2 20 20 N 1.34453 * 126.28652 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.79065 * 0.02562 * 20 2 1 22 22 C 1.53000 * 109.47004 * 270.00302 * 21 20 2 23 23 C 1.53004 * 109.47166 * 180.02562 * 22 21 20 24 24 C 1.52996 * 109.47389 * 174.99924 * 23 22 21 25 25 C 1.53007 * 109.46801 * 294.99515 * 23 22 21 26 26 H 1.09003 * 109.47254 * 89.97813 * 1 2 3 27 27 H 1.09002 * 109.47171 * 209.97186 * 1 2 3 28 28 H 1.08996 * 109.47749 * 329.97407 * 1 2 3 29 29 H 0.96700 * 113.99735 * 294.89102 * 5 4 3 30 30 H 1.09001 * 109.47670 * 299.99737 * 9 7 6 31 31 H 1.09001 * 109.47244 * 60.00031 * 9 7 6 32 32 H 1.09002 * 109.47292 * 180.02562 * 9 7 6 33 33 H 0.97001 * 120.00291 * 179.97438 * 13 12 10 34 34 H 1.08004 * 125.96693 * 179.97438 * 18 3 2 35 35 H 1.08998 * 109.47187 * 29.99806 * 21 20 2 36 36 H 1.09003 * 109.47257 * 150.00023 * 21 20 2 37 37 H 1.09003 * 109.47374 * 299.99421 * 22 21 20 38 38 H 1.08998 * 109.47623 * 60.00129 * 22 21 20 39 39 H 1.09002 * 109.47258 * 54.99230 * 23 22 21 40 40 H 1.08996 * 109.47063 * 59.99588 * 24 23 22 41 41 H 1.08994 * 109.47416 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.46803 * 299.99810 * 24 23 22 43 43 H 1.08995 * 109.47222 * 179.97438 * 25 23 22 44 44 H 1.08996 * 109.47310 * 300.00202 * 25 23 22 45 45 H 1.09000 * 109.46823 * 60.00009 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3226 1.1109 0.0000 4 6 1.8823 2.5213 0.0005 5 8 2.7987 3.5158 0.0010 6 7 0.6126 2.8065 0.0005 7 6 0.1748 4.1997 -0.1175 8 1 1.0408 4.8396 -0.2866 9 6 -0.7944 4.3318 -1.2940 10 6 -0.5183 4.6177 1.1537 11 1 -0.6219 3.9161 1.9681 12 6 -1.0192 5.8964 1.2773 13 7 -1.6236 6.2614 2.3868 14 14 -0.8393 7.1102 -0.1311 15 1 -2.0163 7.0029 -1.0304 16 1 -0.7555 8.4898 0.4120 17 1 0.3967 6.8028 -0.8947 18 6 3.6568 0.6505 0.0006 19 7 3.6347 -0.6545 0.0004 20 7 2.3027 -1.0838 0.0005 21 6 1.8519 -2.4777 0.0006 22 6 1.6943 -2.9626 1.4431 23 6 1.2241 -4.4186 1.4433 24 6 1.1862 -4.9423 2.8803 25 6 -0.1765 -4.5022 0.8330 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8897 0.5142 29 1 3.3386 3.5527 0.8024 30 1 -0.2932 4.0294 -2.2135 31 1 -1.6605 3.6919 -1.1249 32 1 -1.1198 5.3684 -1.3820 33 1 -1.9757 7.1610 2.4739 34 1 4.5416 1.2699 0.0004 35 1 0.8934 -2.5496 -0.5135 36 1 2.5870 -3.0974 -0.5129 37 1 2.6528 -2.8908 1.9573 38 1 0.9592 -2.3430 1.9566 39 1 1.9137 -5.0233 0.8542 40 1 0.4966 -4.3376 3.4692 41 1 0.8508 -5.9793 2.8805 42 1 2.1840 -4.8827 3.3151 43 1 -0.5114 -5.5395 0.8326 44 1 -0.8661 -3.8976 1.4219 45 1 -0.1495 -4.1292 -0.1909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331266687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:18 Heat of formation + Delta-G solvation = 10.991512 kcal Electronic energy + Delta-G solvation = -23682.241396 eV Core-core repulsion = 20314.543336 eV Total energy + Delta-G solvation = -3367.698060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.31428 -39.46579 -37.91665 -36.49891 -34.36793 -34.28762 -33.19611 -31.30375 -29.55690 -28.13460 -27.99539 -27.11396 -25.07530 -24.08495 -21.74810 -21.47472 -20.95037 -20.36362 -18.87632 -18.42647 -17.22010 -16.86622 -16.59682 -16.27246 -16.07412 -15.70862 -15.28130 -14.92886 -14.68257 -14.51210 -14.17881 -14.04124 -13.82126 -13.66052 -13.52317 -13.31820 -13.12122 -13.00160 -12.78764 -12.73978 -12.45810 -12.28379 -12.21597 -11.85336 -11.71884 -11.70025 -11.58301 -11.50377 -11.34772 -10.81485 -10.67210 -10.24512 -10.12895 -9.04544 -8.32587 -6.36535 0.56615 1.12805 1.28888 1.35081 1.46074 1.46591 2.23697 2.30015 3.00062 3.15892 3.54043 3.66577 3.74470 3.83788 3.92182 4.02380 4.16031 4.28790 4.37225 4.48231 4.54866 4.59382 4.67747 4.74983 4.75914 4.77528 4.80924 4.87582 4.97928 5.00121 5.04488 5.08508 5.12234 5.17691 5.29529 5.37480 5.43153 5.48703 5.52254 5.58786 5.64441 6.04600 6.21287 6.64934 6.65959 6.82425 7.21680 7.42098 8.84159 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.003498 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.451539 B = 8001.997074 C = 8640.062443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.146 3.854 3 C -0.255 4.255 4 C 0.387 3.613 5 O -0.536 6.536 6 N -0.520 5.520 7 C 0.170 3.830 8 H 0.013 0.987 9 C -0.130 4.130 10 C -0.509 4.509 11 H 0.029 0.971 12 C 0.017 3.983 13 N -0.946 5.946 14 Si 0.951 3.049 15 H -0.261 1.261 16 H -0.293 1.293 17 H -0.255 1.255 18 C 0.083 3.917 19 N -0.319 5.319 20 N -0.361 5.361 21 C 0.123 3.877 22 C -0.126 4.126 23 C -0.086 4.086 24 C -0.149 4.149 25 C -0.155 4.155 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.410 0.590 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.213 0.787 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -22.093 -5.649 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.013 3.987 3 C -0.268 4.268 4 C 0.159 3.841 5 O -0.342 6.342 6 N -0.248 5.248 7 C 0.061 3.939 8 H 0.031 0.969 9 C -0.187 4.187 10 C -0.548 4.548 11 H 0.048 0.952 12 C -0.181 4.181 13 N -0.586 5.586 14 Si 0.778 3.222 15 H -0.187 1.187 16 H -0.221 1.221 17 H -0.179 1.179 18 C -0.105 4.105 19 N -0.138 5.138 20 N -0.142 5.142 21 C 0.003 3.997 22 C -0.164 4.164 23 C -0.106 4.106 24 C -0.206 4.206 25 C -0.212 4.212 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.269 0.731 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.571 -23.306 -6.064 25.245 hybrid contribution 0.251 2.294 0.546 2.371 sum 7.822 -21.013 -5.518 23.090 Atomic orbital electron populations 1.20662 0.85463 1.04711 1.04336 1.21659 0.95497 0.86355 0.95177 1.18890 0.93731 0.90221 1.23974 1.21353 0.84599 0.85816 0.92304 1.84665 1.52001 1.51907 1.45638 1.72458 1.12835 1.22650 1.16906 1.19407 0.94045 0.86391 0.94082 0.96909 1.21926 1.00044 0.99634 0.97117 1.21070 1.36644 0.97396 0.99649 0.95224 1.25754 0.94150 0.99795 0.98371 1.70023 1.39944 1.20226 1.28390 0.85816 0.80044 0.77085 0.79271 1.18688 1.22081 1.17935 1.24267 0.97246 0.91832 0.97123 1.77075 0.97425 1.13118 1.26173 1.48683 1.03238 1.06684 1.55546 1.22191 1.02328 0.75809 0.99322 1.22010 1.01845 0.97521 0.95040 1.21026 0.98081 0.93794 0.97650 1.21840 1.01702 1.01422 0.95661 1.21969 0.95663 1.02535 1.01042 0.89055 0.89380 0.89490 0.73103 0.93033 0.92391 0.94311 0.92297 0.77037 0.86754 0.87413 0.92174 0.92187 0.89737 0.93221 0.91469 0.92887 0.91646 0.92939 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.49 9.29 71.24 0.66 -1.83 16 2 C 0.15 4.21 7.00 42.06 0.29 4.51 16 3 C -0.25 -8.14 6.13 -20.15 -0.12 -8.27 16 4 C 0.39 14.87 7.80 87.46 0.68 15.55 16 5 O -0.54 -19.04 11.83 -85.21 -1.01 -20.04 16 6 N -0.52 -23.42 7.58 -438.66 -3.33 -26.75 16 7 C 0.17 8.64 2.47 44.24 0.11 8.75 16 8 H 0.01 0.69 5.83 -2.39 -0.01 0.68 16 9 C -0.13 -5.92 9.00 71.98 0.65 -5.27 16 10 C -0.51 -30.53 9.42 25.60 0.24 -30.29 16 11 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 12 C 0.02 1.01 5.45 84.66 0.46 1.47 16 13 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 14 Si 0.95 46.35 24.37 68.60 1.67 48.02 16 15 H -0.26 -11.96 6.87 99.48 0.68 -11.27 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 17 H -0.25 -11.92 6.53 99.48 0.65 -11.27 16 18 C 0.08 2.22 11.87 85.60 1.02 3.23 16 19 N -0.32 -8.64 12.51 -56.33 -0.70 -9.34 16 20 N -0.36 -8.88 3.59 -333.04 -1.19 -10.08 16 21 C 0.12 1.98 5.79 86.38 0.50 2.48 16 22 C -0.13 -1.94 5.01 30.60 0.15 -1.79 16 23 C -0.09 -0.96 2.92 -10.79 -0.03 -0.99 16 24 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 25 C -0.15 -1.55 8.95 71.98 0.64 -0.90 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.09 1.78 7.70 -2.39 -0.02 1.76 16 28 H 0.09 3.03 6.29 -2.39 -0.02 3.01 16 29 H 0.41 10.56 9.06 -74.06 -0.67 9.89 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 33 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.21 4.17 8.06 -2.91 -0.02 4.14 16 35 H 0.11 1.42 6.05 -2.39 -0.01 1.40 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.06 0.55 6.57 -2.39 -0.02 0.53 16 Total: -1.00 -75.69 361.53 1.89 -73.80 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.23 Total: 18.58 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.92 Total: -14.43 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.93 Total: -105.93 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.01 Total: -20.04 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.67 Total: 48.02 kcal Total: -75.69 1.89 -73.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331266687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.793 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds