Wall clock time and date at job start Tue Mar 31 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99797 * 2 1 4 4 H 1.48497 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46836 * 299.99364 * 3 2 1 6 6 H 1.48491 * 109.47289 * 59.99597 * 3 2 1 7 7 C 1.37875 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99792 * 181.34861 * 7 2 1 9 9 C 1.50696 * 120.00204 * 1.34438 * 7 2 1 10 10 C 1.53003 * 115.55195 * 324.03585 * 9 7 2 11 11 N 1.46495 * 109.46593 * 305.86105 * 10 9 7 12 12 C 1.34782 * 119.99924 * 184.73040 * 11 10 9 13 13 O 1.21589 * 119.99612 * 5.70527 * 12 11 10 14 14 N 1.34769 * 120.00231 * 185.43189 * 12 11 10 15 15 C 1.44791 * 120.17795 * 355.04528 * 14 12 11 16 16 C 1.51502 * 112.24639 * 264.62320 * 15 14 12 17 17 C 1.51307 * 113.26858 * 285.29770 * 16 15 14 18 18 H 1.09000 * 111.33863 * 186.20146 * 17 16 15 19 19 C 1.54723 * 106.46184 * 307.78719 * 17 16 15 20 20 C 1.54211 * 104.46214 * 89.02643 * 19 17 16 21 21 C 1.50875 * 105.38006 * 11.59963 * 20 19 17 22 22 H 1.08995 * 106.55887 * 121.78881 * 21 20 19 23 23 C 1.49820 * 120.17399 * 174.77159 * 14 12 11 24 24 N 1.49057 * 109.01052 * 62.97560 * 17 16 15 25 25 C 1.53003 * 117.49838 * 109.70428 * 9 7 2 26 26 C 1.52999 * 117.50049 * 178.36028 * 9 7 2 27 27 H 0.96999 * 120.00098 * 5.00795 * 1 2 3 28 28 H 1.08997 * 109.47112 * 185.85999 * 10 9 7 29 29 H 1.08996 * 109.46712 * 65.86041 * 10 9 7 30 30 H 0.96997 * 120.00846 * 4.72695 * 11 10 9 31 31 H 1.08995 * 108.92562 * 25.34133 * 15 14 12 32 32 H 1.09003 * 108.92540 * 143.91393 * 15 14 12 33 33 H 1.09000 * 108.72603 * 46.27957 * 16 15 14 34 34 H 1.09007 * 108.72206 * 164.32141 * 16 15 14 35 35 H 1.08999 * 110.43825 * 207.77078 * 19 17 16 36 36 H 1.09006 * 110.43590 * 330.15895 * 19 17 16 37 37 H 1.08996 * 110.26314 * 130.58214 * 20 19 17 38 38 H 1.09003 * 110.26179 * 252.53448 * 20 19 17 39 39 H 1.09003 * 109.53957 * 270.57013 * 23 14 12 40 40 H 1.08992 * 109.54289 * 30.83366 * 23 14 12 41 41 H 1.00900 * 110.99882 * 36.96886 * 24 17 16 42 42 H 1.09000 * 117.49854 * 215.00559 * 25 9 7 43 43 H 1.09006 * 117.49657 * 0.02562 * 25 9 7 44 44 H 1.09002 * 117.49712 * 359.97438 * 26 9 7 45 45 H 1.08993 * 117.50224 * 145.00004 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0225 9 6 1.2514 -2.4990 -0.0295 10 6 -0.0623 -2.5209 0.7544 11 7 0.1854 -2.0958 2.1343 12 6 -0.8130 -2.1286 3.0391 13 8 -1.8897 -2.6074 2.7392 14 7 -0.6163 -1.6359 4.2780 15 6 0.6952 -1.1686 4.6756 16 6 1.4847 -2.2325 5.4106 17 6 1.0093 -2.4562 6.8295 18 1 1.6636 -3.1457 7.3630 19 6 0.9820 -1.0656 7.5071 20 6 -0.4296 -0.5202 7.2106 21 6 -1.2055 -1.6936 6.6650 22 1 -2.0654 -1.8293 7.3209 23 6 -1.7548 -1.5630 5.2490 24 7 -0.3949 -2.9553 6.7981 25 6 1.3205 -3.3251 -1.3155 26 6 2.0738 -3.7886 -0.0662 27 1 -0.4850 0.8368 -0.0733 28 1 -0.4693 -3.5320 0.7532 29 1 -0.7754 -1.8417 0.2874 30 1 1.0679 -1.7907 2.3969 31 1 1.2487 -0.8692 3.7856 32 1 0.5795 -0.3017 5.3261 33 1 1.4025 -3.1708 4.8620 34 1 2.5332 -1.9355 5.4356 35 1 1.1343 -1.1629 8.5820 36 1 1.7420 -0.4157 7.0732 37 1 -0.8931 -0.1542 8.1267 38 1 -0.3782 0.2775 6.4694 39 1 -2.2666 -0.6068 5.1397 40 1 -2.4535 -2.3764 5.0534 41 1 -0.5397 -3.5788 6.0181 42 1 0.4301 -3.8841 -1.6030 43 1 1.9112 -2.9249 -2.1396 44 1 3.1596 -3.6932 -0.0690 45 1 1.6790 -4.6527 0.4682 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334942261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:57 Heat of formation + Delta-G solvation = 17.339390 kcal Electronic energy + Delta-G solvation = -25452.570268 eV Core-core repulsion = 22085.147473 eV Total energy + Delta-G solvation = -3367.422796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72530 -38.57155 -36.70464 -34.33073 -33.36246 -32.46762 -32.10240 -30.64426 -27.76960 -26.33189 -25.71798 -24.88169 -22.56312 -21.24377 -20.45185 -20.20104 -19.29925 -18.69447 -17.61643 -16.69982 -16.23143 -15.74446 -15.16550 -14.94383 -14.76731 -14.07615 -14.01347 -13.54737 -13.35961 -13.02027 -12.89989 -12.63167 -12.53604 -12.17995 -11.93724 -11.71020 -11.68299 -11.49518 -11.30613 -11.15003 -11.02431 -10.79263 -10.75150 -10.53299 -10.27827 -10.21306 -9.69866 -9.23829 -8.98428 -8.86950 -8.60369 -8.36176 -8.27166 -7.65618 -6.03064 -4.22808 3.15289 3.20190 3.26528 3.28865 3.99479 4.24009 4.25661 4.49455 4.58616 4.64659 4.78010 4.95632 5.01255 5.12565 5.26852 5.33181 5.45165 5.48811 5.50456 5.62466 5.71062 5.81717 5.85600 5.99306 6.00981 6.03724 6.04939 6.07697 6.27994 6.31463 6.55228 6.62433 6.67045 6.75499 6.83099 6.90732 7.07940 7.25764 7.28561 7.53991 7.63655 7.78417 7.97249 8.30186 8.73940 8.94917 9.40249 9.47391 10.86430 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.005489 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.124084 B = 5099.886548 C = 5632.032570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.181 3.819 11 N -0.700 5.700 12 C 0.702 3.298 13 O -0.609 6.609 14 N -0.637 5.637 15 C 0.101 3.899 16 C -0.170 4.170 17 C 0.065 3.935 18 H 0.092 0.908 19 C -0.121 4.121 20 C -0.121 4.121 21 C 0.049 3.951 22 H 0.079 0.921 23 C 0.122 3.878 24 N -0.649 5.649 25 C -0.197 4.197 26 C -0.211 4.211 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.109 0.891 30 H 0.395 0.605 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.344 0.656 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -0.571 13.697 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.035 3.965 10 C 0.058 3.942 11 N -0.352 5.352 12 C 0.403 3.597 13 O -0.490 6.490 14 N -0.377 5.377 15 C -0.023 4.023 16 C -0.210 4.210 17 C -0.045 4.045 18 H 0.110 0.890 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.061 4.061 22 H 0.097 0.903 23 C -0.001 4.001 24 N -0.278 5.278 25 C -0.235 4.235 26 C -0.249 4.249 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.126 0.874 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.161 0.839 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.677 -0.918 14.216 14.262 hybrid contribution 1.173 1.300 -1.088 2.062 sum 1.850 0.382 13.128 13.263 Atomic orbital electron populations 1.69897 1.05653 1.26561 1.48022 1.25005 0.94831 0.98991 0.94235 0.86557 0.80109 0.83715 0.77807 1.19725 1.20838 1.20994 1.20544 0.92440 0.88573 1.51740 0.92118 1.19248 0.93338 0.89717 0.94211 1.20933 0.97787 0.96512 0.79006 1.45008 1.11712 1.68307 1.10142 1.15936 0.84665 0.79125 0.79987 1.90819 1.26073 1.52927 1.79170 1.47488 1.09288 1.68179 1.12781 1.20982 0.84272 0.96805 1.00285 1.22203 1.00822 1.00875 0.97104 1.22460 0.91558 0.95828 0.94664 0.88975 1.22507 0.96884 0.95676 1.00803 1.21855 0.95696 0.97290 1.01007 1.22310 0.98016 0.90592 0.95152 0.90263 1.22289 0.88734 1.02810 0.86314 1.64842 1.03943 1.11706 1.47285 1.22927 1.01188 1.06564 0.92869 1.22939 0.97876 1.00414 1.03650 0.92803 0.96190 0.87385 0.76911 0.90161 0.90113 0.91623 0.90555 0.91344 0.90719 0.90902 0.90599 0.91771 0.89307 0.83881 0.91447 0.90229 0.90716 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.83 10.30 55.43 0.57 -22.26 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 3 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.50 -12.42 8.29 -34.44 -0.29 -12.70 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.04 0.84 2.05 -155.66 -0.32 0.52 16 10 C 0.18 4.37 4.65 -4.04 -0.02 4.35 16 11 N -0.70 -15.30 5.09 -65.23 -0.33 -15.63 16 12 C 0.70 15.04 8.28 -86.92 -0.72 14.33 16 13 O -0.61 -15.17 15.96 5.29 0.08 -15.09 16 14 N -0.64 -10.63 2.67 -179.24 -0.48 -11.11 16 15 C 0.10 1.43 5.04 -5.71 -0.03 1.40 16 16 C -0.17 -2.04 4.77 -28.34 -0.14 -2.17 16 17 C 0.06 0.70 4.32 -66.46 -0.29 0.41 16 18 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 19 C -0.12 -1.12 6.01 -25.19 -0.15 -1.27 16 20 C -0.12 -1.18 5.77 -27.16 -0.16 -1.34 16 21 C 0.05 0.57 3.00 -67.01 -0.20 0.37 16 22 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 23 C 0.12 1.75 5.77 -2.47 -0.01 1.73 16 24 N -0.65 -7.91 7.55 -96.90 -0.73 -8.64 16 25 C -0.20 -4.32 9.96 -26.69 -0.27 -4.59 16 26 C -0.21 -4.44 9.92 -26.70 -0.26 -4.70 16 27 H 0.26 6.75 8.32 -40.82 -0.34 6.42 16 28 H 0.02 0.48 8.04 -51.93 -0.42 0.07 16 29 H 0.11 2.96 5.92 -51.93 -0.31 2.66 16 30 H 0.39 8.30 5.55 -40.82 -0.23 8.07 16 31 H 0.08 1.28 5.97 -51.93 -0.31 0.97 16 32 H 0.08 1.01 3.92 -51.93 -0.20 0.81 16 33 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.65 7.39 -51.93 -0.38 0.26 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.77 6.14 -51.93 -0.32 0.46 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.40 7.46 -51.93 -0.39 1.01 16 41 H 0.34 4.72 7.80 -39.29 -0.31 4.41 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -28.23 339.33 -10.79 -39.02 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -7.05 Total: 15.82 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.94 Total: -1.91 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.97 Total: -57.64 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.23 -10.79 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334942261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.357 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds