Wall clock time and date at job start Tue Mar 31 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99797 * 2 1 4 4 H 1.48497 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46836 * 299.99364 * 3 2 1 6 6 H 1.48491 * 109.47289 * 59.99597 * 3 2 1 7 7 C 1.37875 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99792 * 181.34861 * 7 2 1 9 9 C 1.50696 * 120.00204 * 1.34438 * 7 2 1 10 10 C 1.53003 * 115.55195 * 324.03585 * 9 7 2 11 11 N 1.46495 * 109.46593 * 305.86105 * 10 9 7 12 12 C 1.34782 * 119.99924 * 184.73040 * 11 10 9 13 13 O 1.21589 * 119.99612 * 5.70527 * 12 11 10 14 14 N 1.34769 * 120.00231 * 185.43189 * 12 11 10 15 15 C 1.44791 * 120.17795 * 355.04528 * 14 12 11 16 16 C 1.51502 * 112.24639 * 264.62320 * 15 14 12 17 17 C 1.51307 * 113.26858 * 285.29770 * 16 15 14 18 18 H 1.09000 * 111.33863 * 186.20146 * 17 16 15 19 19 C 1.54723 * 106.46184 * 307.78719 * 17 16 15 20 20 C 1.54211 * 104.46214 * 89.02643 * 19 17 16 21 21 C 1.50875 * 105.38006 * 11.59963 * 20 19 17 22 22 H 1.08995 * 106.55887 * 121.78881 * 21 20 19 23 23 C 1.49820 * 120.17399 * 174.77159 * 14 12 11 24 24 N 1.49057 * 109.01052 * 62.97560 * 17 16 15 25 25 C 1.53003 * 117.49838 * 109.70428 * 9 7 2 26 26 C 1.52999 * 117.50049 * 178.36028 * 9 7 2 27 27 H 0.96999 * 120.00098 * 5.00795 * 1 2 3 28 28 H 1.08997 * 109.47112 * 185.85999 * 10 9 7 29 29 H 1.08996 * 109.46712 * 65.86041 * 10 9 7 30 30 H 0.96997 * 120.00846 * 4.72695 * 11 10 9 31 31 H 1.08995 * 108.92562 * 25.34133 * 15 14 12 32 32 H 1.09003 * 108.92540 * 143.91393 * 15 14 12 33 33 H 1.09000 * 108.72603 * 46.27957 * 16 15 14 34 34 H 1.09007 * 108.72206 * 164.32141 * 16 15 14 35 35 H 1.08999 * 110.43825 * 207.77078 * 19 17 16 36 36 H 1.09006 * 110.43590 * 330.15895 * 19 17 16 37 37 H 1.08996 * 110.26314 * 130.58214 * 20 19 17 38 38 H 1.09003 * 110.26179 * 252.53448 * 20 19 17 39 39 H 1.09003 * 109.53957 * 270.57013 * 23 14 12 40 40 H 1.08992 * 109.54289 * 30.83366 * 23 14 12 41 41 H 1.00900 * 110.99882 * 36.96886 * 24 17 16 42 42 H 1.09000 * 117.49854 * 215.00559 * 25 9 7 43 43 H 1.09006 * 117.49657 * 0.02562 * 25 9 7 44 44 H 1.09002 * 117.49712 * 359.97438 * 26 9 7 45 45 H 1.08993 * 117.50224 * 145.00004 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0225 9 6 1.2514 -2.4990 -0.0295 10 6 -0.0623 -2.5209 0.7544 11 7 0.1854 -2.0958 2.1343 12 6 -0.8130 -2.1286 3.0391 13 8 -1.8897 -2.6074 2.7392 14 7 -0.6163 -1.6359 4.2780 15 6 0.6952 -1.1686 4.6756 16 6 1.4847 -2.2325 5.4106 17 6 1.0093 -2.4562 6.8295 18 1 1.6636 -3.1457 7.3630 19 6 0.9820 -1.0656 7.5071 20 6 -0.4296 -0.5202 7.2106 21 6 -1.2055 -1.6936 6.6650 22 1 -2.0654 -1.8293 7.3209 23 6 -1.7548 -1.5630 5.2490 24 7 -0.3949 -2.9553 6.7981 25 6 1.3205 -3.3251 -1.3155 26 6 2.0738 -3.7886 -0.0662 27 1 -0.4850 0.8368 -0.0733 28 1 -0.4693 -3.5320 0.7532 29 1 -0.7754 -1.8417 0.2874 30 1 1.0679 -1.7907 2.3969 31 1 1.2487 -0.8692 3.7856 32 1 0.5795 -0.3017 5.3261 33 1 1.4025 -3.1708 4.8620 34 1 2.5332 -1.9355 5.4356 35 1 1.1343 -1.1629 8.5820 36 1 1.7420 -0.4157 7.0732 37 1 -0.8931 -0.1542 8.1267 38 1 -0.3782 0.2775 6.4694 39 1 -2.2666 -0.6068 5.1397 40 1 -2.4535 -2.3764 5.0534 41 1 -0.5397 -3.5788 6.0181 42 1 0.4301 -3.8841 -1.6030 43 1 1.9112 -2.9249 -2.1396 44 1 3.1596 -3.6932 -0.0690 45 1 1.6790 -4.6527 0.4682 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334942261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:57 Heat of formation + Delta-G solvation = -0.741105 kcal Electronic energy + Delta-G solvation = -25453.354298 eV Core-core repulsion = 22085.147473 eV Total energy + Delta-G solvation = -3368.206825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90279 -40.06900 -38.48211 -35.76742 -34.81289 -34.16142 -33.62067 -31.48442 -29.04161 -27.79703 -27.36478 -26.45219 -23.72811 -22.96982 -21.51716 -21.17297 -21.11139 -20.19235 -19.08888 -18.02466 -17.81304 -16.82146 -16.66139 -16.49199 -16.39250 -15.67591 -15.42652 -14.92679 -14.80624 -14.46498 -14.08328 -14.05867 -13.62211 -13.47729 -13.40887 -13.16950 -12.95370 -12.80555 -12.68123 -12.58918 -12.41659 -12.27563 -12.05864 -11.96445 -11.68234 -11.53636 -11.24565 -10.90737 -10.82073 -10.68244 -10.17801 -9.93641 -9.56445 -9.28886 -7.95142 -6.20842 1.39722 1.45749 1.54700 1.76614 2.32765 2.41126 2.97504 3.26494 3.30937 3.60708 3.65489 3.74317 3.76710 3.96718 4.12054 4.24285 4.28243 4.31965 4.49665 4.52647 4.57133 4.65117 4.72739 4.75172 4.80108 4.82406 4.94009 4.96864 5.03058 5.10130 5.11841 5.16680 5.25677 5.27981 5.38567 5.51347 5.58734 5.60004 5.79309 5.91890 5.96578 6.11487 6.23872 6.37481 6.81169 7.26280 7.44344 7.77062 8.92272 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.005489 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.124084 B = 5099.886548 C = 5632.032570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.035 3.965 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.008 3.992 10 C 0.195 3.805 11 N -0.697 5.697 12 C 0.695 3.305 13 O -0.651 6.651 14 N -0.629 5.629 15 C 0.098 3.902 16 C -0.161 4.161 17 C 0.064 3.936 18 H 0.104 0.896 19 C -0.116 4.116 20 C -0.119 4.119 21 C 0.056 3.944 22 H 0.090 0.910 23 C 0.121 3.879 24 N -0.654 5.654 25 C -0.197 4.197 26 C -0.187 4.187 27 H 0.256 0.744 28 H 0.010 0.990 29 H 0.073 0.927 30 H 0.399 0.601 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.333 0.667 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 0.144 15.698 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.166 4.166 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.007 3.993 10 C 0.070 3.930 11 N -0.349 5.349 12 C 0.396 3.604 13 O -0.535 6.535 14 N -0.367 5.367 15 C -0.025 4.025 16 C -0.201 4.201 17 C -0.045 4.045 18 H 0.122 0.878 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.055 4.055 22 H 0.108 0.892 23 C -0.002 4.002 24 N -0.282 5.282 25 C -0.236 4.236 26 C -0.224 4.224 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.091 0.909 30 H 0.236 0.764 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.472 -0.191 16.266 16.454 hybrid contribution 0.605 1.039 -1.704 2.086 sum 3.077 0.848 14.562 14.907 Atomic orbital electron populations 1.70081 1.06881 1.26689 1.49128 1.25606 0.95330 1.01661 0.94031 0.85642 0.79261 0.80180 0.77365 1.18947 1.21481 1.20703 1.20701 0.92359 0.89338 1.51471 0.92265 1.19295 0.93701 0.90633 0.95661 1.20571 0.97472 0.94866 0.80102 1.44849 1.12051 1.68468 1.09516 1.16176 0.83880 0.79082 0.81266 1.90777 1.27576 1.54790 1.80368 1.47529 1.11080 1.66677 1.11452 1.21179 0.82841 0.98415 1.00053 1.22130 1.01601 0.98922 0.97459 1.22577 0.90828 0.97226 0.93917 0.87808 1.22521 0.96706 0.94443 1.01696 1.21882 0.95964 0.96153 1.01692 1.22328 0.98806 0.91341 0.92981 0.89197 1.22459 0.87996 1.02240 0.87530 1.64885 1.05025 1.11799 1.46494 1.22952 1.01725 1.06146 0.92757 1.22920 0.98170 0.99034 1.02253 0.93407 0.97195 0.90894 0.76405 0.92137 0.87862 0.93754 0.88494 0.89814 0.89604 0.88850 0.90903 0.91318 0.91318 0.85180 0.90820 0.90183 0.89599 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.98 10.30 21.45 0.22 -47.76 16 2 C 0.04 1.78 5.30 84.65 0.45 2.22 16 3 Si 0.95 40.25 29.54 68.60 2.03 42.27 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.50 -24.98 8.29 25.60 0.21 -24.77 16 8 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.01 0.37 2.05 -52.93 -0.11 0.26 16 10 C 0.19 9.68 4.65 86.38 0.40 10.08 16 11 N -0.70 -31.24 5.09 -478.55 -2.44 -33.68 16 12 C 0.69 30.72 8.28 179.06 1.48 32.21 16 13 O -0.65 -33.86 15.96 -4.00 -0.06 -33.92 16 14 N -0.63 -21.09 2.67 -839.27 -2.24 -23.33 16 15 C 0.10 2.67 5.04 86.21 0.43 3.10 16 16 C -0.16 -3.58 4.77 29.55 0.14 -3.44 16 17 C 0.06 1.22 4.32 44.53 0.19 1.41 16 18 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 19 C -0.12 -1.71 6.01 31.59 0.19 -1.52 16 20 C -0.12 -1.94 5.77 30.31 0.17 -1.76 16 21 C 0.06 1.18 3.00 43.32 0.13 1.31 16 22 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 23 C 0.12 3.43 5.77 85.55 0.49 3.93 16 24 N -0.65 -14.92 7.55 -460.49 -3.48 -18.40 16 25 C -0.20 -8.56 9.96 30.62 0.30 -8.26 16 26 C -0.19 -7.59 9.92 30.62 0.30 -7.28 16 27 H 0.26 13.54 8.32 -92.71 -0.77 12.77 16 28 H 0.01 0.50 8.04 -2.39 -0.02 0.48 16 29 H 0.07 4.18 5.92 -2.39 -0.01 4.17 16 30 H 0.40 17.01 5.55 -92.71 -0.51 16.49 16 31 H 0.06 1.90 5.97 -2.39 -0.01 1.89 16 32 H 0.10 2.35 3.92 -2.39 -0.01 2.35 16 33 H 0.04 1.18 8.06 -2.39 -0.02 1.17 16 34 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.12 7.39 -2.38 -0.02 1.11 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.26 6.14 -2.39 -0.01 1.24 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.24 7.46 -2.39 -0.02 2.22 16 41 H 0.33 9.01 7.80 -89.69 -0.70 8.31 16 42 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 44 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -61.65 339.33 -1.38 -63.03 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.21 Total: 44.30 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.80 Total: 7.48 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -7.94 Total: -123.16 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.06 Total: -33.92 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Total: -61.65 -1.38 -63.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334942261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.287 kcal (2) G-P(sol) polarization free energy of solvation -61.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds