Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35989 * 117.00107 * 2 1 4 4 C 1.38569 * 120.07438 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.00263 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.14782 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.14287 * 0.02562 * 6 5 4 8 8 C 1.38567 * 120.00357 * 359.71845 * 7 6 5 9 9 O 1.35996 * 120.07616 * 180.27528 * 8 7 6 10 10 C 1.42893 * 116.99887 * 0.27880 * 9 8 7 11 11 C 1.53001 * 109.47064 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.47154 * 65.10324 * 11 10 9 13 13 C 1.46903 * 110.99905 * 199.81170 * 12 11 10 14 14 C 1.46899 * 111.00232 * 75.85761 * 12 11 10 15 15 C 1.52998 * 109.47224 * 190.00089 * 14 12 11 16 16 C 1.53001 * 109.47065 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47024 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00168 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00140 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99946 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00086 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47153 * 90.00179 * 21 19 17 23 23 H 1.48495 * 109.47465 * 210.00366 * 21 19 17 24 24 H 1.48504 * 109.46827 * 330.00214 * 21 19 17 25 25 H 1.08995 * 109.47631 * 300.00268 * 1 2 3 26 26 H 1.09003 * 109.47188 * 60.00699 * 1 2 3 27 27 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99778 * 359.97438 * 4 3 2 29 29 H 1.08007 * 119.92742 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.92816 * 179.97438 * 6 5 4 31 31 H 1.08005 * 119.99940 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.47498 * 299.99616 * 10 9 8 33 33 H 1.09000 * 109.47256 * 60.00027 * 10 9 8 34 34 H 1.09005 * 109.46933 * 185.10013 * 11 10 9 35 35 H 1.08998 * 109.47317 * 305.09965 * 11 10 9 36 36 H 1.08997 * 109.47108 * 54.02439 * 13 12 11 37 37 H 1.08998 * 109.46882 * 174.02856 * 13 12 11 38 38 H 1.09003 * 109.46603 * 294.02621 * 13 12 11 39 39 H 1.09003 * 109.46846 * 309.99915 * 14 12 11 40 40 H 1.08997 * 109.47319 * 69.99373 * 14 12 11 41 41 H 1.09002 * 109.47085 * 300.00247 * 15 14 12 42 42 H 1.09005 * 109.46793 * 59.99617 * 15 14 12 43 43 H 1.09003 * 109.47201 * 299.99946 * 16 15 14 44 44 H 1.08997 * 109.47072 * 60.00288 * 16 15 14 45 45 H 0.97003 * 119.99941 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 3.3029 3.6799 -0.0005 7 6 4.0602 2.5234 0.0000 8 6 3.4359 1.2863 0.0059 9 8 4.1795 0.1476 0.0121 10 6 5.6002 0.3007 0.0183 11 6 6.2617 -1.0789 0.0254 12 7 5.9536 -1.7761 -1.2304 13 6 6.1494 -3.2252 -1.0897 14 6 6.7549 -1.2418 -2.3396 15 6 6.2369 -1.8092 -3.6626 16 6 7.0711 -1.2522 -4.8179 17 6 6.5613 -1.8116 -6.1210 18 1 5.7255 -2.4956 -6.1249 19 6 7.1617 -1.4501 -7.3083 20 7 6.7164 -1.9379 -8.4456 21 14 8.6068 -0.2665 -7.3018 22 1 9.8734 -1.0323 -7.1819 23 1 8.6161 0.5105 -8.5673 24 1 8.4797 0.6635 -6.1510 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 0.2146 2.3196 -0.0014 29 1 1.3341 4.5115 -0.0019 30 1 3.7907 4.6434 -0.0014 31 1 5.1385 2.5840 0.0000 32 1 5.9106 0.8483 -0.8716 33 1 5.9023 0.8526 0.9084 34 1 7.3413 -0.9637 0.1215 35 1 5.8820 -1.6597 0.8660 36 1 5.5728 -3.5889 -0.2393 37 1 5.8142 -3.7269 -1.9974 38 1 7.2068 -3.4348 -0.9281 39 1 6.6754 -0.1548 -2.3545 40 1 7.7980 -1.5279 -2.2050 41 1 6.3163 -2.8962 -3.6477 42 1 5.1937 -1.5230 -3.7971 43 1 6.9913 -0.1652 -4.8327 44 1 8.1143 -1.5381 -4.6836 45 1 7.1391 -1.6839 -9.2809 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338736577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = -47.920039 kcal Electronic energy + Delta-G solvation = -23355.356204 eV Core-core repulsion = 19952.810796 eV Total energy + Delta-G solvation = -3402.545408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54976 -38.73345 -37.53246 -36.68500 -33.71331 -31.73962 -30.64757 -30.41081 -29.14755 -27.39948 -27.28640 -25.07929 -23.38217 -22.35711 -21.93243 -20.52137 -19.88819 -18.72385 -17.34194 -16.66110 -16.46289 -16.34679 -15.70075 -15.18428 -14.93136 -14.82278 -14.71622 -14.29312 -14.10569 -13.86906 -13.48456 -12.92910 -12.70470 -12.55964 -12.33550 -12.23811 -11.89844 -11.73633 -11.62739 -11.43916 -11.24588 -11.20263 -11.04221 -10.86086 -10.84383 -10.51215 -9.89517 -9.59950 -9.52404 -9.11615 -8.84591 -8.48989 -8.06679 -7.83572 -5.99259 -3.96512 1.18569 1.37232 3.20444 3.21314 3.32964 3.40160 3.44163 3.65036 4.08327 4.49198 4.64750 4.74988 4.86118 4.94852 4.99130 5.04577 5.08048 5.19198 5.28392 5.30634 5.34549 5.36832 5.39769 5.49318 5.57173 5.59999 5.70654 5.80789 5.91699 6.07732 6.14786 6.16324 6.24322 6.38057 6.57074 6.60772 6.63802 6.96712 7.05500 7.27915 7.31430 7.43380 7.52853 7.60581 7.85763 8.60946 9.06941 9.63513 11.14467 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.003442 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.387025 B = 8132.269085 C = 8620.626516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.302 6.302 3 C 0.097 3.903 4 C -0.175 4.175 5 C -0.125 4.125 6 C -0.117 4.117 7 C -0.178 4.178 8 C 0.110 3.890 9 O -0.283 6.283 10 C 0.064 3.936 11 C 0.055 3.945 12 N -0.535 5.535 13 C 0.027 3.973 14 C 0.051 3.949 15 C -0.097 4.097 16 C -0.013 4.013 17 C -0.517 4.517 18 H 0.072 0.928 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.021 0.979 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.014 0.986 44 H 0.008 0.992 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 8.588 23.029 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.215 6.215 3 C 0.052 3.948 4 C -0.194 4.194 5 C -0.143 4.143 6 C -0.135 4.135 7 C -0.197 4.197 8 C 0.064 3.936 9 O -0.196 6.196 10 C -0.012 4.012 11 C -0.073 4.073 12 N -0.259 5.259 13 C -0.121 4.121 14 C -0.076 4.076 15 C -0.135 4.135 16 C -0.051 4.051 17 C -0.555 4.555 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.032 0.968 44 H 0.026 0.974 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.279 8.258 22.732 25.563 hybrid contribution 1.561 0.849 -0.069 1.779 sum -6.717 9.107 22.663 25.332 Atomic orbital electron populations 1.23046 0.78882 1.03958 1.00913 1.86229 1.20704 1.25739 1.88848 1.18291 0.89285 0.85279 1.01988 1.21048 0.99829 0.91645 1.06845 1.20796 0.94565 0.96888 1.02079 1.20839 0.93761 0.97795 1.01144 1.21103 1.00453 0.91237 1.06895 1.18344 0.88458 0.86524 1.00272 1.86290 1.18087 1.27218 1.88023 1.22899 0.79054 0.98370 1.00864 1.22114 0.97319 0.94030 0.93833 1.61977 1.56610 1.03802 1.03500 1.22396 0.98778 0.88189 1.02779 1.22404 0.93948 0.99514 0.91744 1.21457 1.00612 0.99733 0.91670 1.19552 0.94979 0.96215 0.94335 1.21158 1.17173 1.27824 0.89304 0.91012 1.25038 0.97046 0.95972 0.95532 1.69923 1.41881 1.44890 0.97765 0.86775 0.83198 0.81813 0.77469 1.20395 1.21416 1.19074 0.93047 0.92740 0.88241 0.85015 0.85847 0.85790 0.84937 0.91706 0.92168 0.92749 0.90054 0.91921 0.90480 0.96062 0.91548 0.95366 0.92792 0.91935 0.96765 0.97378 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.20 10.28 -34.21 -0.35 -4.55 16 3 C 0.10 1.33 6.70 -39.12 -0.26 1.06 16 4 C -0.17 -1.91 9.04 -39.46 -0.36 -2.26 16 5 C -0.12 -1.25 10.04 -39.58 -0.40 -1.65 16 6 C -0.12 -1.21 10.04 -39.58 -0.40 -1.61 16 7 C -0.18 -2.10 9.04 -39.46 -0.36 -2.46 16 8 C 0.11 1.56 6.70 -39.12 -0.26 1.30 16 9 O -0.28 -4.30 9.87 -34.23 -0.34 -4.64 16 10 C 0.06 0.78 4.93 37.16 0.18 0.96 16 11 C 0.06 0.68 5.39 -3.82 -0.02 0.66 16 12 N -0.53 -8.22 4.64 -242.92 -1.13 -9.34 16 13 C 0.03 0.37 9.25 60.07 0.56 0.92 16 14 C 0.05 0.87 4.78 -3.83 -0.02 0.85 16 15 C -0.10 -2.03 5.08 -26.73 -0.14 -2.17 16 16 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 17 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 18 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 21 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 29 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.33 6.30 -52.48 -0.33 1.00 16 32 H 0.06 0.82 6.18 -51.93 -0.32 0.50 16 33 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 34 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 35 H 0.08 0.92 7.79 -51.93 -0.40 0.51 16 36 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 37 H 0.08 1.15 6.57 -51.93 -0.34 0.81 16 38 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 39 H 0.07 1.11 6.57 -51.93 -0.34 0.77 16 40 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 41 H 0.05 1.13 6.60 -51.93 -0.34 0.78 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 44 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -34.34 361.87 -8.60 -42.94 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.32 Total: -2.26 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.02 Total: -17.32 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.35 Total: -37.17 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.69 Total: -9.19 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.34 -8.60 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338736577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.982 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds