Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35989 * 117.00107 * 2 1 4 4 C 1.38569 * 120.07438 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.00263 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.14782 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.14287 * 0.02562 * 6 5 4 8 8 C 1.38567 * 120.00357 * 359.71845 * 7 6 5 9 9 O 1.35996 * 120.07616 * 180.27528 * 8 7 6 10 10 C 1.42893 * 116.99887 * 0.27880 * 9 8 7 11 11 C 1.53001 * 109.47064 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.47154 * 65.10324 * 11 10 9 13 13 C 1.46903 * 110.99905 * 199.81170 * 12 11 10 14 14 C 1.46899 * 111.00232 * 75.85761 * 12 11 10 15 15 C 1.52998 * 109.47224 * 190.00089 * 14 12 11 16 16 C 1.53001 * 109.47065 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47024 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00168 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00140 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99946 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00086 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47153 * 90.00179 * 21 19 17 23 23 H 1.48495 * 109.47465 * 210.00366 * 21 19 17 24 24 H 1.48504 * 109.46827 * 330.00214 * 21 19 17 25 25 H 1.08995 * 109.47631 * 300.00268 * 1 2 3 26 26 H 1.09003 * 109.47188 * 60.00699 * 1 2 3 27 27 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99778 * 359.97438 * 4 3 2 29 29 H 1.08007 * 119.92742 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.92816 * 179.97438 * 6 5 4 31 31 H 1.08005 * 119.99940 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.47498 * 299.99616 * 10 9 8 33 33 H 1.09000 * 109.47256 * 60.00027 * 10 9 8 34 34 H 1.09005 * 109.46933 * 185.10013 * 11 10 9 35 35 H 1.08998 * 109.47317 * 305.09965 * 11 10 9 36 36 H 1.08997 * 109.47108 * 54.02439 * 13 12 11 37 37 H 1.08998 * 109.46882 * 174.02856 * 13 12 11 38 38 H 1.09003 * 109.46603 * 294.02621 * 13 12 11 39 39 H 1.09003 * 109.46846 * 309.99915 * 14 12 11 40 40 H 1.08997 * 109.47319 * 69.99373 * 14 12 11 41 41 H 1.09002 * 109.47085 * 300.00247 * 15 14 12 42 42 H 1.09005 * 109.46793 * 59.99617 * 15 14 12 43 43 H 1.09003 * 109.47201 * 299.99946 * 16 15 14 44 44 H 1.08997 * 109.47072 * 60.00288 * 16 15 14 45 45 H 0.97003 * 119.99941 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 3.3029 3.6799 -0.0005 7 6 4.0602 2.5234 0.0000 8 6 3.4359 1.2863 0.0059 9 8 4.1795 0.1476 0.0121 10 6 5.6002 0.3007 0.0183 11 6 6.2617 -1.0789 0.0254 12 7 5.9536 -1.7761 -1.2304 13 6 6.1494 -3.2252 -1.0897 14 6 6.7549 -1.2418 -2.3396 15 6 6.2369 -1.8092 -3.6626 16 6 7.0711 -1.2522 -4.8179 17 6 6.5613 -1.8116 -6.1210 18 1 5.7255 -2.4956 -6.1249 19 6 7.1617 -1.4501 -7.3083 20 7 6.7164 -1.9379 -8.4456 21 14 8.6068 -0.2665 -7.3018 22 1 9.8734 -1.0323 -7.1819 23 1 8.6161 0.5105 -8.5673 24 1 8.4797 0.6635 -6.1510 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 0.2146 2.3196 -0.0014 29 1 1.3341 4.5115 -0.0019 30 1 3.7907 4.6434 -0.0014 31 1 5.1385 2.5840 0.0000 32 1 5.9106 0.8483 -0.8716 33 1 5.9023 0.8526 0.9084 34 1 7.3413 -0.9637 0.1215 35 1 5.8820 -1.6597 0.8660 36 1 5.5728 -3.5889 -0.2393 37 1 5.8142 -3.7269 -1.9974 38 1 7.2068 -3.4348 -0.9281 39 1 6.6754 -0.1548 -2.3545 40 1 7.7980 -1.5279 -2.2050 41 1 6.3163 -2.8962 -3.6477 42 1 5.1937 -1.5230 -3.7971 43 1 6.9913 -0.1652 -4.8327 44 1 8.1143 -1.5381 -4.6836 45 1 7.1391 -1.6839 -9.2809 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338736577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = -70.350662 kcal Electronic energy + Delta-G solvation = -23356.328869 eV Core-core repulsion = 19952.810796 eV Total energy + Delta-G solvation = -3403.518073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41617 -39.70087 -38.63509 -37.61231 -35.65934 -33.66275 -31.69718 -31.23272 -30.09839 -29.09532 -28.02962 -26.37976 -24.74791 -23.22495 -23.08103 -21.92230 -21.37044 -19.60725 -18.89564 -18.17757 -17.37776 -17.35024 -16.66071 -16.47780 -16.15977 -15.91135 -15.68343 -15.54452 -15.35398 -15.09300 -14.80255 -14.58194 -13.81353 -13.68534 -13.53285 -13.41383 -13.16027 -12.96534 -12.76598 -12.72054 -12.56792 -12.34110 -12.00065 -11.98082 -11.84380 -11.80737 -11.77175 -11.49125 -11.32127 -11.21274 -10.76680 -9.67667 -9.19562 -8.73133 -8.29761 -6.34486 0.35258 0.51956 1.34794 1.37812 1.50078 2.33144 2.36309 2.43860 2.81418 2.97555 3.05180 3.81777 3.95167 4.04820 4.06956 4.14501 4.18353 4.29978 4.31080 4.38285 4.40764 4.48871 4.49854 4.54703 4.63657 4.65759 4.67765 4.73427 4.79807 4.84383 4.89217 4.95631 5.01743 5.14280 5.27148 5.37805 5.51284 5.57174 5.58760 5.65824 5.81104 6.11049 6.16065 6.26549 6.30795 6.73068 6.73725 7.29932 8.87597 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.003442 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.387025 B = 8132.269085 C = 8620.626516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.068 3.932 4 C -0.177 4.177 5 C -0.124 4.124 6 C -0.121 4.121 7 C -0.184 4.184 8 C 0.076 3.924 9 O -0.312 6.312 10 C 0.061 3.939 11 C 0.057 3.943 12 N -0.556 5.556 13 C 0.028 3.972 14 C 0.064 3.936 15 C -0.088 4.088 16 C -0.007 4.007 17 C -0.535 4.535 18 H 0.025 0.975 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.956 3.044 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.245 1.245 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.037 0.963 43 H 0.019 0.981 44 H 0.021 0.979 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 11.035 24.968 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.023 3.977 4 C -0.195 4.195 5 C -0.143 4.143 6 C -0.139 4.139 7 C -0.202 4.202 8 C 0.031 3.969 9 O -0.226 6.226 10 C -0.014 4.014 11 C -0.071 4.071 12 N -0.281 5.281 13 C -0.120 4.120 14 C -0.063 4.063 15 C -0.126 4.126 16 C -0.045 4.045 17 C -0.573 4.573 18 H 0.044 0.956 19 C -0.195 4.195 20 N -0.594 5.594 21 Si 0.778 3.222 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.168 1.168 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.961 10.703 24.700 27.804 hybrid contribution 0.994 0.043 -0.678 1.204 sum -5.967 10.746 24.022 26.984 Atomic orbital electron populations 1.23290 0.76889 1.05158 1.02118 1.86164 1.23022 1.26635 1.89242 1.18701 0.89724 0.86006 1.03285 1.21379 1.00955 0.91228 1.05951 1.21233 0.94900 0.97599 1.00522 1.21244 0.94140 0.98446 1.00053 1.21364 1.01393 0.90958 1.06522 1.18751 0.88983 0.87081 1.02128 1.86235 1.19380 1.28409 1.88624 1.23039 0.78061 0.98572 1.01758 1.22217 0.98755 0.93847 0.92244 1.61876 1.56907 1.04697 1.04587 1.22379 0.99840 0.87393 1.02372 1.22133 0.94490 0.99528 0.90176 1.21271 0.98731 0.99381 0.93216 1.19476 0.95876 0.96171 0.93016 1.21508 1.16218 1.27452 0.92159 0.95649 1.26098 1.00592 0.98072 0.94756 1.70088 1.43884 1.46732 0.98743 0.85577 0.78873 0.79366 0.78344 1.18835 1.20852 1.16832 0.91143 0.92091 0.87196 0.82850 0.82851 0.83100 0.83582 0.92501 0.89407 0.90405 0.89159 0.90378 0.92610 0.94682 0.91037 0.94001 0.93464 0.94435 0.96278 0.96019 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -9.62 10.28 -79.56 -0.82 -10.44 16 3 C 0.07 1.87 6.70 22.57 0.15 2.02 16 4 C -0.18 -3.63 9.04 22.35 0.20 -3.43 16 5 C -0.12 -2.18 10.04 22.27 0.22 -1.96 16 6 C -0.12 -2.22 10.04 22.27 0.22 -1.99 16 7 C -0.18 -4.12 9.04 22.35 0.20 -3.91 16 8 C 0.08 2.17 6.70 22.57 0.15 2.32 16 9 O -0.31 -9.55 9.87 -79.64 -0.79 -10.33 16 10 C 0.06 1.40 4.93 71.98 0.36 1.76 16 11 C 0.06 1.27 5.39 86.30 0.46 1.74 16 12 N -0.56 -16.56 4.64 -922.45 -4.28 -20.84 16 13 C 0.03 0.75 9.25 127.69 1.18 1.93 16 14 C 0.06 2.11 4.78 86.30 0.41 2.53 16 15 C -0.09 -3.75 5.08 30.59 0.16 -3.59 16 16 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 17 C -0.54 -32.55 9.66 25.60 0.25 -32.30 16 18 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 19 C 0.00 0.07 5.47 84.65 0.46 0.53 16 20 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 21 Si 0.96 45.20 27.47 68.60 1.88 47.09 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 25 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 26 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 27 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.15 2.68 6.30 -2.91 -0.02 2.66 16 32 H 0.06 1.37 6.18 -2.39 -0.01 1.35 16 33 H 0.09 1.48 7.68 -2.39 -0.02 1.46 16 34 H 0.08 1.40 8.00 -2.38 -0.02 1.38 16 35 H 0.09 1.86 7.79 -2.39 -0.02 1.84 16 36 H 0.08 1.82 7.93 -2.39 -0.02 1.80 16 37 H 0.06 1.70 6.57 -2.39 -0.02 1.69 16 38 H 0.03 0.83 8.13 -2.39 -0.02 0.81 16 39 H 0.07 2.27 6.57 -2.39 -0.02 2.26 16 40 H 0.04 1.27 8.11 -2.39 -0.02 1.25 16 41 H 0.05 2.03 6.60 -2.39 -0.02 2.02 16 42 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 44 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 45 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -77.32 361.87 2.87 -74.46 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.90 Total: 14.74 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 5.67 Total: -33.16 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -3.98 Total: -82.35 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.60 Total: -20.77 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -77.32 2.87 -74.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338736577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.107 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds