Wall clock time and date at job start Tue Mar 31 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47248 * 299.99976 * 3 2 1 6 6 H 1.48508 * 109.47322 * 59.99780 * 3 2 1 7 7 C 1.37874 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00469 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99582 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46864 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99835 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46829 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47066 * 64.99955 * 12 11 10 14 14 C 1.46903 * 110.99444 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.47631 * 324.99930 * 14 13 12 16 16 C 1.52998 * 109.47083 * 85.00299 * 14 13 12 17 17 C 1.53011 * 109.46963 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47061 * 299.99706 * 17 16 14 19 19 C 1.53007 * 109.47009 * 60.00081 * 18 17 16 20 20 C 1.52998 * 109.46985 * 299.99672 * 19 18 17 21 21 H 1.08996 * 109.47707 * 300.00115 * 20 19 18 22 22 N 1.46502 * 109.46713 * 179.97438 * 20 19 18 23 23 C 1.34942 * 126.03991 * 325.02832 * 22 20 19 24 24 C 1.35316 * 107.74613 * 179.75096 * 23 22 20 25 25 C 1.39870 * 107.92161 * 0.39436 * 24 23 22 26 26 N 1.30836 * 108.20019 * 359.59732 * 25 24 23 27 27 H 0.97006 * 119.99894 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47348 * 59.99882 * 9 7 2 29 29 H 1.09000 * 109.47188 * 299.99400 * 9 7 2 30 30 H 1.08998 * 109.47118 * 59.99885 * 11 10 9 31 31 H 1.08995 * 109.47189 * 299.99445 * 11 10 9 32 32 H 1.09003 * 109.46979 * 304.99315 * 12 11 10 33 33 H 1.08999 * 109.46775 * 185.00443 * 12 11 10 34 34 H 1.00899 * 111.00004 * 303.94841 * 13 12 11 35 35 H 1.09000 * 109.46996 * 299.99457 * 16 14 13 36 36 H 1.08998 * 109.47608 * 60.00002 * 16 14 13 37 37 H 1.08998 * 109.46732 * 59.99740 * 17 16 14 38 38 H 1.09005 * 109.46784 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47473 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47509 * 300.00165 * 18 17 16 41 41 H 1.09000 * 109.47013 * 180.02562 * 19 18 17 42 42 H 1.08996 * 109.46992 * 60.00224 * 19 18 17 43 43 H 1.08002 * 126.12737 * 359.97438 * 23 22 20 44 44 H 1.07998 * 126.04386 * 180.27449 * 24 23 22 45 45 H 1.08002 * 125.90382 * 179.86983 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5852 0.0017 11 6 1.5650 -4.8754 0.0024 12 6 2.6481 -5.9562 0.0043 13 7 3.4071 -5.8865 1.2601 14 6 4.4578 -6.9125 1.2976 15 1 4.1052 -7.8124 0.7936 16 6 5.7083 -6.3879 0.5892 17 6 6.8029 -7.4564 0.6288 18 6 7.1415 -7.7858 2.0840 19 6 5.8909 -8.3104 2.7925 20 6 4.7964 -7.2420 2.7529 21 1 5.1488 -6.3419 3.2566 22 7 3.5988 -7.7445 3.4307 23 6 3.1614 -9.0211 3.4274 24 6 2.0318 -9.0720 4.1706 25 6 1.7649 -7.7806 4.6370 26 7 2.7055 -6.9847 4.1969 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 0.9453 -4.9831 -0.8877 31 1 0.9446 -4.9818 0.8922 32 1 3.3223 -5.7964 -0.8372 33 1 2.1821 -6.9375 -0.0848 34 1 3.7956 -4.9655 1.3972 35 1 5.4670 -6.1529 -0.4474 36 1 6.0610 -5.4882 1.0933 37 1 6.4504 -8.3564 0.1251 38 1 7.6937 -7.0828 0.1237 39 1 7.9216 -8.5466 2.1123 40 1 7.4939 -6.8858 2.5879 41 1 6.1320 -8.5447 3.8293 42 1 5.5386 -9.2104 2.2887 43 1 3.6310 -9.8538 2.9248 44 1 1.4397 -9.9535 4.3673 45 1 0.9294 -7.4913 5.2572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339090615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:49 Heat of formation + Delta-G solvation = 15.999229 kcal Electronic energy + Delta-G solvation = -23912.402985 eV Core-core repulsion = 20544.922076 eV Total energy + Delta-G solvation = -3367.480909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14027 -38.99957 -36.91893 -34.77994 -33.02187 -32.66558 -30.44550 -29.86043 -28.91629 -27.38688 -26.18734 -23.41919 -22.42742 -22.26710 -21.36720 -21.09442 -20.58027 -19.57320 -17.40619 -16.42501 -15.86287 -15.66298 -15.43412 -14.99360 -14.58312 -14.54792 -14.30026 -14.10033 -13.91439 -13.52952 -13.28838 -13.04711 -12.82460 -12.70628 -12.56013 -12.04729 -11.74706 -11.53946 -11.44969 -11.36151 -11.05243 -10.90255 -10.81310 -10.75585 -10.66331 -10.46124 -10.37430 -9.99574 -9.20618 -9.07178 -8.80584 -8.44522 -8.14542 -8.09911 -6.08857 -4.10523 2.11119 2.62508 3.05987 3.30067 3.36353 3.42366 3.97460 4.36414 4.38524 4.53296 4.66817 4.72597 4.79233 4.85413 4.95904 5.02843 5.07411 5.11450 5.17493 5.27701 5.38050 5.45148 5.52418 5.63913 5.66566 5.70914 5.71277 5.74890 5.81708 5.93390 5.97143 6.05569 6.12152 6.14947 6.22978 6.39105 6.84126 7.14179 7.16468 7.23417 7.47256 7.65045 7.80913 7.96748 8.17648 8.60062 9.02642 9.54217 11.02784 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.003597 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.241290 B = 7781.564751 C = 8671.113303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.064 3.936 12 C 0.071 3.929 13 N -0.671 5.671 14 C 0.079 3.921 15 H 0.077 0.923 16 C -0.149 4.149 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.127 4.127 20 C 0.173 3.827 21 H 0.101 0.899 22 N -0.344 5.344 23 C 0.042 3.958 24 C -0.279 4.279 25 C 0.029 3.971 26 N -0.264 5.264 27 H 0.263 0.737 28 H 0.003 0.997 29 H 0.006 0.994 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.358 0.642 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.163 0.837 44 H 0.139 0.861 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -21.520 4.573 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.014 4.014 12 C -0.058 4.058 13 N -0.303 5.303 14 C -0.033 4.033 15 H 0.095 0.905 16 C -0.189 4.189 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.166 4.166 20 C 0.070 3.930 21 H 0.119 0.881 22 N -0.125 5.125 23 C -0.104 4.104 24 C -0.309 4.309 25 C -0.157 4.157 26 N -0.084 5.084 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.024 0.976 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.180 0.820 44 H 0.157 0.843 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.721 -20.465 4.840 24.076 hybrid contribution 0.142 0.325 -0.732 0.813 sum 11.864 -20.140 4.108 23.733 Atomic orbital electron populations 1.69977 1.06106 1.27005 1.50626 1.24946 0.94959 0.99410 0.95187 0.86299 0.79971 0.82693 0.77616 1.19542 1.20881 1.20805 1.21078 0.93980 0.89401 1.50680 0.91630 1.20167 0.88704 0.83447 0.95342 1.87772 1.35773 1.13104 1.95230 1.22254 0.94480 0.85233 0.99417 1.21927 0.95661 0.97875 0.90365 1.60461 1.25866 1.08683 1.35243 1.21936 0.91055 0.96666 0.93595 0.90474 1.22309 0.95588 0.99226 1.01797 1.21537 0.98757 0.98984 0.96374 1.21502 0.96426 1.01620 0.95766 1.21914 0.94787 0.98000 1.01896 1.21291 0.81153 0.98033 0.92532 0.88104 1.48578 1.20362 1.05122 1.38463 1.22321 0.97518 0.88836 1.01746 1.21390 1.01346 0.98832 1.09339 1.23824 0.98946 0.91925 1.00989 1.77516 1.02136 1.18810 1.09978 0.92724 0.97915 0.97617 0.94338 0.93579 0.94864 0.91186 0.82195 0.90974 0.90985 0.91850 0.91475 0.91107 0.91289 0.90775 0.91031 0.82013 0.84313 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.20 5.57 5.69 36.01 0.20 5.78 16 10 O -0.40 -9.75 9.85 -35.23 -0.35 -10.09 16 11 C 0.06 1.26 6.28 37.16 0.23 1.49 16 12 C 0.07 1.11 5.90 -3.82 -0.02 1.08 16 13 N -0.67 -10.21 6.08 -106.72 -0.65 -10.86 16 14 C 0.08 0.90 2.13 -67.71 -0.14 0.76 16 15 H 0.08 0.86 7.80 -51.93 -0.40 0.46 16 16 C -0.15 -1.48 5.17 -26.73 -0.14 -1.62 16 17 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 18 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 19 C -0.13 -0.96 4.85 -26.73 -0.13 -1.09 16 20 C 0.17 1.88 2.86 -67.93 -0.19 1.68 16 21 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 22 N -0.34 -4.43 3.36 -54.86 -0.18 -4.61 16 23 C 0.04 0.47 10.59 -17.23 -0.18 0.28 16 24 C -0.28 -3.22 10.80 -40.01 -0.43 -3.65 16 25 C 0.03 0.39 12.03 -17.37 -0.21 0.19 16 26 N -0.26 -4.17 12.58 30.62 0.39 -3.78 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 33 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.36 6.13 8.03 -39.29 -0.32 5.82 16 35 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 36 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.47 7.15 -51.93 -0.37 0.10 16 43 H 0.16 1.24 7.26 -52.49 -0.38 0.86 16 44 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -33.37 364.02 -9.05 -42.43 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.71 Total: 2.14 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.75 Total: -11.17 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.29 Total: -45.89 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.35 Total: -10.09 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.37 -9.05 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339090615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.424 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds